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1194 matching publication(s)
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.
PMID 23496952 · BMC Genomics · 2013
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69/100
Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
PMID 24131564 · Genome Res · 2013
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100/100
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PMID 24068976 · PLoS Genet · 2013
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76/100
Genome-wide signatures of convergent evolution in echolocating mammals.
PMID 24005325 · Nature · 2013
not yet assessed
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.
PMID 23979935 · G3 (Bethesda) · 2013
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91/100
Combining evidence of preferential gene-tissue relationships from multiple sources.
PMID 23950964 · PLoS One · 2013
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53/100
A global change in RNA polymerase II pausing during the Drosophila midblastula transition.
PMID 23951546 · Elife · 2013
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71/100
Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic.⚑
PMID 23516341 · PLoS Comput Biol · 2013
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44/100
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An extensive evaluation of read trimming effects on Illumina NGS data analysis.
PMID 24376861 · PLoS One · 2013
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85/100
Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.
PMID 24211736 · Methods · 2013
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71/100
Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq.
PMID 23555231 · PLoS Comput Biol · 2013
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74/100
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress.⚑
PMID 24324815 · PLoS One · 2013
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38/100
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FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
PMID 23768108 · BMC Bioinformatics · 2013
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65/100
oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets.⚑
PMID 22973536 · G3 (Bethesda) · 2012
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49/100
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Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.
PMID 22466171 · Genome Res · 2012
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80/100
RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.
PMID 23145190 · PLoS Negl Trop Dis · 2012
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66/100
Genomic analysis of bacteria in the Acute Oak Decline pathobiome.
PMID 30625111 · Microb Genom · 2019
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100/100
Differential Hsp90-dependent gene expression is strain-specific and common among yeast strains.
PMID 37138775 · iScience · 2023
100/100
Free circular introns with an unusual branchpoint in neuronal projections.
PMID 31697236 · Elife · 2019
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99/100
A platinum standard pan-genome resource that represents the population structure of Asian rice.
PMID 32265447 · Sci Data · 2020
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99/100
Diminutive, degraded but dissimilar: Wolbachia genomes from filarial nematodes do not conform to a single paradigm.
PMID 33295865 · Microb Genom · 2020
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98/100
Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle.
PMID 32523568 · Front Microbiol · 2020
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97/100
Energy, power, and infrastructure demands from electrifying airport ground support equipment at United States airports.
PMID 41912553 · Nat Commun · 2026
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95/100
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
PMID 38877886 · Brief Bioinform · 2024
L1
90/100
Machine learning reveals microbial interactions driving plastic degradation across plastisphere environments.
PMID 41657981 · Front Microbiol · 2026
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87/100
Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila.
PMID 32900993 · Nat Commun · 2020
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86/100
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
PMID 35870428 · EBioMedicine · 2022
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85/100
Cancer-cell-secreted miR-204-5p induces leptin signalling pathway in white adipose tissue to promote cancer-associated cachexia.
PMID 37620316 · Nat Commun · 2023
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85/100
Taxonomic and functional partitioning of Chloroflexota populations under ferruginous conditions at and below the sediment-water interface.
PMID 39384533 · FEMS Microbiol Ecol · 2024
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85/100
Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.
PMID 33103064 · One Health Outlook · 2020
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85/100
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.
PMID 40379625 · Nat Commun · 2025
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84/100
Strong population differentiation in lingcod (Ophiodon elongatus) is driven by a small portion of the genome.
PMID 33294007 · Evol Appl · 2020
L1
84/100
Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis.
PMID 32194870 · Theranostics · 2020
L1
79/100
Contrasting nutrient retention in alpine soils: the role of soil microbiome in phosphorus and nitrogen mobility in scree and meadow environments.
PMID 41632073 · FEMS Microbiol Ecol · 2026
L1
63/100
DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive Pluripotency.
PMID 31722211 · Cell Rep · 2019
50/100
Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production.
PMID 37223250 · Microlife · 2021
50/100
Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster.
PMID 23284297 · PLoS Genet · 2012
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93/100
TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.
PMID 23233547 · Genome Res · 2012
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78/100
High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.
PMID 23222129 · Nucleic Acids Res · 2012
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69/100
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
PMID 22955991 · Genome Res · 2012
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74/100
RNASEQR--a streamlined and accurate RNA-seq sequence analysis program.
PMID 22199257 · Nucleic Acids Res · 2011
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86/100
A case study for large-scale human microbiome analysis using JCVI's metagenomics reports (METAREP).
PMID 22719821 · PLoS One · 2012
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78/100
Digital sorting of complex tissues for cell type-specific gene expression profiles.
PMID 23497278 · BMC Bioinformatics · 2013
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85/100
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
PMID 24304889 · Nucleic Acids Res · 2013
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84/100
The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements.
PMID 21857667 · Nat Cell Biol · 2011
L1
90/100
Hobbes: optimized gram-based methods for efficient read alignment.
PMID 22199254 · Nucleic Acids Res · 2011
L1
83/100
QTLs for heat-induced stomatal anatomy underpin gas exchange variation in field-grown wheat.
PMID 42231893 · Front Plant Sci · 2026
L1
100/100