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198 matching publication(s)
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
PMID 38877886 · Brief Bioinform · 2024
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Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.
PMID 40379625 · Nat Commun · 2025
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Identification of succinylation-related genes in bladder cancer: integration of single-cell and transcriptomic data.
PMID 42220482 · Front Immunol · 2026
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78/100
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.
PMID 42172220 · PLoS One · 2026
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LRP1 as a potential diagnostic and immunomodulatory target in endometriosis: evidence from multi-omics and single-cell analyses.
PMID 42064072 · Front Immunol · 2026
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49/100
Identification of key genes in chickpea transcriptomics and the development of ChickpeaOmicsR as a comprehensive resource to advance breeding and genomic studie⚑
PMID 41909810 · Front Bioinform · 2026
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Integrated multi-omics analysis combined with clinical validation reveals that HLA-DRB5 and ODAPH are causal risk genes for keratoconus.
PMID 41803193 · Sci Rep · 2026
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Intratumoral heterogeneity in microsatellite instability status at single-cell resolution.
PMID 41767255 · iScience · 2026
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ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries.
PMID 41790830 · PLoS Comput Biol · 2026
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Population structure analysis of Salmonella serovar Muenchen to redefine geno-serotyping using genome indexing approaches.⚑
PMID 41743541 · Front Microbiol · 2026
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huSA: a comprehensive database for multi-dimensional resolution of bulk, single cell and spatial transcription profiles in skin diseases.
PMID 41719583 · Database (Oxford) · 2026
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Integrative transcriptomic and machine learning framework reveals candidate genes and potential mechanisms of aflatoxin B1 exposure in breast cancer.
PMID 41688730 · Sci Rep · 2026
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Accelerating rare disease diagnostics by linking DNA and RNA through an explainable and interactive RNA-guided workflow.
PMID 41685349 · NAR Genom Bioinform · 2026
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Chromosome-level genome assembly of agar-producing red seaweed Gracilaria vermiculophylla.
PMID 41629338 · Sci Data · 2026
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91/100
DMN-seq enriches DNA hypomethylated regions for biomarker discovery using 5-methylcytosine glycosylase.
PMID 41673887 · Genome Biol · 2026
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Enhancing cell subpopulation discovery in cancer by integrating single-cell transcriptome and expressed variants.
PMID 41647537 · Fundam Res · 2025
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Integrative analysis of transcriptomic data reveals a predictive gene signature for chemoradiotherapy response in rectal cancer.
PMID 41550766 · iScience · 2025
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Enhanced microRNA accumulation and gene silencing efficiency through optimized precursor base pairing.
PMID 41505763 · Plant J · 2026
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A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
PMID 41505094 · Nucleic Acids Res · 2026
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Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni).
PMID 41490125 · PLoS One · 2026
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iceDP: identifying inter-chromatin engagement via density peaks clustering algorithm.⚑
PMID 41499218 · Brief Bioinform · 2026
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DAGFormer: A graph-based domain adaptation approach for single-cell cancer drug response prediction.
PMID 41417875 · PLoS Comput Biol · 2025
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No data access
Integrated analysis of post-transcriptional regulations reveals insights into acute myeloid leukemia.⚑
PMID 41407883 · Commun Biol · 2025
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Widespread mono- and oligoadenylation direct small noncoding RNA maturation versus degradation fates.
PMID 41350938 · EMBO J · 2025
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Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq.
PMID 41313685 · STAR Protoc · 2025
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MUTACLASH: identifying functional small RNA target sites using crosslinking-induced mutations.
PMID 41330639 · RNA · 2026
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ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.⚑
PMID 41263110 · Nucleic Acids Res · 2026
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Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets.
PMID 41226816 · Int J Mol Sci · 2025
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Allele-specific immune gene quantification and expression analysis in single-cell RNA-seq data.
PMID 41229397 · NAR Genom Bioinform · 2025
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DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments.
PMID 41055236 · RNA Biol · 2025
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Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material.
PMID 41029822 · J Transl Med · 2025
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Developing a thyroid cancer differentiation state classification system using deep residual networks and metabolic signature profiling.⚑
PMID 40993300 · NPJ Digit Med · 2025
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Identification of Key Differentially Expressed Genes in Arabidopsis thaliana Under Short- and Long-Term High Light Stress.
PMID 40869111 · Int J Mol Sci · 2025
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Interpretable and integrative analysis of single-cell multiomics with scMKL.
PMID 40770488 · Commun Biol · 2025
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65/100
CanCellCap: robust cancer cell capture across tissue types on single-cell RNA-seq data by multi-domain learning.
PMID 40739511 · BMC Biol · 2025
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Metabolic reprogramming and prognostic insights in molecular landscapes driven by glycolysis in ovarian cancer.
PMID 40707588 · Sci Rep · 2025
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Improved epigenetic age prediction models by combining sex chromosome and autosomal markers.
PMID 40665390 · Epigenetics Chromatin · 2025
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Integrative transcriptomics and single-cell transcriptomics analyses reveal potential biomarkers and mechanisms of action in papillary thyroid carcinoma.
PMID 40520228 · Front Genet · 2025
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Comprehensive bioinformatics analysis and experimental verification identify mitochondrial gene Dgat2 as a novel therapeutic biomarker for myocardial ischemia-r
PMID 40510478 · Front Endocrinol (Lausanne) · 2025
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scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification.
PMID 40501071 · Brief Bioinform · 2025
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ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae.
PMID 40364978 · Bio Protoc · 2025
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Integrated bioinformatics analysis screened the key genes and pathways of idiopathic pulmonary fibrosis.
PMID 40280949 · Sci Rep · 2025
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Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay.
PMID 40252222 · STAR Protoc · 2025
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Dynamic Gene Attention Focus (DyGAF): Enhancing Biomarker Identification Through Dual-Model Attention Networks.⚑
PMID 40160891 · Bioinform Biol Insights · 2025
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Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility.
PMID 40106407 · PLoS Genet · 2025
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Data-driven projections of candidate enhancer-activating SNPs in immune regulation.
PMID 40011812 · BMC Genomics · 2025
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Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
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Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits.
PMID 39901160 · Genome Biol · 2025
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Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis.
PMID 39890881 · Sci Rep · 2025
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Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma.
PMID 39856156 · Sci Rep · 2025
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