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16 matching publication(s)
Digital sorting of complex tissues for cell type-specific gene expression profiles.
PMID 23497278 · BMC Bioinformatics · 2013
L1
85/100
Correcting scale distortion in RNA sequencing data.
PMID 39875825 · BMC Bioinformatics · 2025
L1
76/100
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images.
PMID 38539106 · BMC Bioinformatics · 2024
L1
77/100
Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer.
PMID 38066424 · BMC Bioinformatics · 2023
L1
83/100
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.
PMID 37016291 · BMC Bioinformatics · 2023
L1
95/100
nf-core/circrna: a portable workflow for the quantification, miRNA target prediction and differential expression analysis of circular RNAs.
PMID 36694127 · BMC Bioinformatics · 2023
L1
76/100
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
PMID 36513983 · BMC Bioinformatics · 2022
L1
99/100
msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data.
PMID 36123620 · BMC Bioinformatics · 2022
L1
100/100
getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories.
PMID 35804320 · BMC Bioinformatics · 2022
L1
99/100
SEAseq: a portable and cloud-based chromatin occupancy analysis suite.
PMID 35193506 · BMC Bioinformatics · 2022
L1
94/100
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis.
PMID 34082707 · BMC Bioinformatics · 2021
L1
85/100
IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner.
PMID 33522913 · BMC Bioinformatics · 2021
L1
78/100
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).
PMID 31035919 · BMC Bioinformatics · 2019
L1
88/100
miRge 2.0 for comprehensive analysis of microRNA sequencing data.
PMID 30153801 · BMC Bioinformatics · 2018
L1
89/100
Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries.
PMID 27756200 · BMC Bioinformatics · 2016
75/100
A robust data scaling algorithm to improve classification accuracies in biomedical data.
PMID 27612635 · BMC Bioinformatics · 2016
87/100