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21 matching publication(s)

Publication	Journal	Year	Score	Verdict
OptiType: precision HLA typing from next-generation sequencing data. PMID 25143287	Bioinformatics	2014	95	L1 95/100
stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images. PMID 41692960	Bioinformatics	2026	75	L1 75/100
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. PMID 38940130	Bioinformatics	2024	87	L1 87/100
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data. PMID 38950178	Bioinformatics	2024	40	L1 40/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues. PMID 37995291	Bioinformatics	2023	79	L1 79/100
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites. PMID 37847658	Bioinformatics	2023	67	L1 67/100
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing. PMID 37129547	Bioinformatics	2023	83	L1 83/100
Predicting the pathogenicity of missense variants using features derived from AlphaFold2. PMID 37084271	Bioinformatics	2023	85	L1 85/100
nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing. PMID 36961337	Bioinformatics	2023	88	L1 88/100
genomepy: genes and genomes at your fingertips. PMID 36882164	Bioinformatics	2023	97	L1 97/100
TransFlow: a Snakemake workflow for transmission analysis of Mycobacterium tuberculosis whole-genome sequencing data. ⚑ PMID 36469333	Bioinformatics	2023	43	L1 43/100 ⚑
Pharokka: a fast scalable bacteriophage annotation tool. PMID 36453861	Bioinformatics	2023	84	L1 84/100
Sparse and skew hashing of K-mers. PMID 35758794	Bioinformatics	2022	95	L1 95/100
EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts. ⚑ PMID 35561186	Bioinformatics	2022	49	L1 49/100 ⚑
Topological approximate Bayesian computation for parameter inference of an angiogenesis model. PMID 35191485	Bioinformatics	2022	100	L1 100/100
An accurate method for identifying recent recombinants from unaligned sequences. PMID 35025988	Bioinformatics	2022	84	L1 84/100
An OMICs-based meta-analysis to support infection state stratification. PMID 33560295	Bioinformatics	2021	44	L1 44/100
aCLImatise: automated generation of tool definitions for bioinformatics workflows. PMID 33325479	Bioinformatics	2021	93	L1 93/100
A Bayesian approach to accurate and robust signature detection on LINCS L1000 data. PMID 32003771	Bioinformatics	2020	37	L1 37/100
Nimbus: a design-driven analyses suite for amplicon-based NGS data. PMID 29538618	Bioinformatics	2018	64	L1 64/100
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. PMID 36321867	Bioinformatics	2023	67	L1 67/100