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38 matching publication(s)

Publication	Journal	Year	Score	Verdict
Transcriptome profiling of radish (Raphanus sativus L.) root and identification of genes involved in response to Lead (Pb) stress with next generation sequencin ⚑ PMID 23840502	PLoS One	2013	27	L1 27/100 ⚑
Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs. ⚑ PMID 23536903	PLoS One	2013	45	L1 45/100 ⚑
The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment. ⚑ PMID 25506420	F1000Res	2013	42	L1 42/100 ⚑
Bayesian prediction of microbial oxygen requirement. PMID 26913185	F1000Res	2013	76	L1 76/100
Does excitatory fronto-extracerebral tDCS lead to improved working memory performance? PMID 24555105	F1000Res	2013	61	L1 61/100
StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics. ⚑ PMID 24627795	F1000Res	2013	43	L1 43/100 ⚑
taxize: taxonomic search and retrieval in R. ⚑ PMID 24555091	F1000Res	2013	30	L1 30/100 ⚑
Vespucci: a system for building annotated databases of nascent transcripts. PMID 24304890	Nucleic Acids Res	2013	73	L1 73/100
Cyrface: An interface from Cytoscape to R that provides a user interface to R packages. PMID 24715956	F1000Res	2013	67	L1 67/100
Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms. PMID 24555103	F1000Res	2013	71	L1 71/100
Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity. PMID 23326238	PLoS Genet	2013	49	L1 49/100
Quantitative epigenetic co-variation in CpG islands and co-regulation of developmental genes. PMID 23999385	Sci Rep	2013	95	L1 95/100
Using random walks to identify cancer-associated modules in expression data. ⚑ PMID 24128261	BioData Min	2013	—	not yet assessed
Genomic and transcriptomic plasticity in treatment-naive ovarian cancer. PMID 24221193	Genome Res	2013	30	L1 30/100
Comparative transcriptome analysis of tomato (Solanum lycopersicum) in response to exogenous abscisic acid. PMID 24289302	BMC Genomics	2013	63	L1 63/100
Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generatio PMID 24236165	PLoS One	2013	82	L1 82/100
Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression. PMID 23951250	PLoS One	2013	67	L1 67/100
Compression of structured high-throughput sequencing data. ⚑ PMID 24260313	PLoS One	2013	43	L1 43/100 ⚑
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly. PMID 23496952	BMC Genomics	2013	69	L1 69/100
Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency. PMID 24131564	Genome Res	2013	100	L1 100/100
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. PMID 24068976	PLoS Genet	2013	76	L1 76/100
Genome-wide signatures of convergent evolution in echolocating mammals. PMID 24005325	Nature	2013	—	not yet assessed
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing. PMID 23979935	G3 (Bethesda)	2013	91	L1 91/100
Combining evidence of preferential gene-tissue relationships from multiple sources. PMID 23950964	PLoS One	2013	53	L1 53/100
A global change in RNA polymerase II pausing during the Drosophila midblastula transition. PMID 23951546	Elife	2013	71	L1 71/100
Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic. ⚑ PMID 23516341	PLoS Comput Biol	2013	44	L1 44/100 ⚑
An extensive evaluation of read trimming effects on Illumina NGS data analysis. PMID 24376861	PLoS One	2013	85	L1 85/100
Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data. PMID 24211736	Methods	2013	71	L1 71/100
Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq. PMID 23555231	PLoS Comput Biol	2013	74	L1 74/100
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress. ⚑ PMID 24324815	PLoS One	2013	38	L1 38/100 ⚑
FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq. PMID 23768108	BMC Bioinformatics	2013	65	L1 65/100
Optimal scaling of digital transcriptomes. PMID 24223126	PLoS One	2013	67	L1 67/100
Digital sorting of complex tissues for cell type-specific gene expression profiles. PMID 23497278	BMC Bioinformatics	2013	85	L1 85/100
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. PMID 24304889	Nucleic Acids Res	2013	84	L1 84/100
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA. PMID 24204593	PLoS One	2013	71	71/100
Reelin and the Cdc42/Rac1 guanine nucleotide exchange factor αPIX/Arhgef6 promote dendritic Golgi translocation in hippocampal neurons. PMID 23406282	—	2013	—	L1 No computation
Functional analysis of a duplication (p.E63_D69dup) in the switch II region of HRAS: new aspects of the molecular pathogenesis underlying Costello syndrome. PMID 23335589	—	2013	—	L1 No computation
Dysfunction of SHANK2 and CHRNA7 in a patient with intellectual disability and language impairment supports genetic epistasis of the two loci. PMID 23350639	Clinical genetics	2013	—	L1 No computation