Zebulun Arendsee

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Foster thy young: enhanced prediction of orphan genes in assembled genomes.
  2022 L1 84/100

1 assessed by us (1 reproduced) · 60 not yet assessed — every PubMed paper on record, linked below.

• <tt>morloc</tt> : a workflow language for multi-lingual programming under a common type system ↗

  PeerJ Computer Science · 2026
  not yet assessed
• morloc-project/morloc: Effectful daemonic operators ↗

  Open MIND · 2026
  not yet assessed
• morloc-project/morloc: Guarded recursion ↗

  Open MIND · 2026
  not yet assessed
• morloc-project/morloc: v0.69.0-rc.9 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.69.0-rc.10 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.69.0 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.70.6 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.72.2 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.71.3 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.72.0 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.73.0 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• morloc-project/morloc: v0.74.0-rc.3 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• Quantifying the zoonotic risk profile of European influenza A viruses in swine from 2010 to 2020 inclusive ↗

  Journal of Virology · 2025 · PMID 40464577
  not yet assessed
• Sources and sinks of influenza A virus genomic diversity in swine from 2009 to 2022 in the United States ↗

  Journal of Virology · 2025 · PMID 40985717
  not yet assessed
• Turnip mosaic virus infection cleaves MEDIATOR SUBUNIT16 in plants increasing plant susceptibility to the virus and its aphid vector Myzus persicae ↗

  BMC Plant Biology · 2025 · PMID 40170134
  not yet assessed
• Sources and sinks of influenza A virus genomic diversity in swine from 2009 to 2022 in the United States ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• morloc-project/morloc: Lots of useability features ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential ↗

  PLoS Pathogens · 2023 · PMID 37498825
  not yet assessed
• Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in influenza A virus from North American swine ↗

  Virus Evolution · 2023 · PMID 36993794
  not yet assessed
• Swine-to-Ferret Transmission of Antigenically Drifted Contemporary Swine H3N2 Influenza A Virus Is an Indicator of Zoonotic Risk to Humans ↗

  Viruses · 2023 · PMID 36851547
  not yet assessed
• classLog: Logistic regression for the classification of genetic sequences ↗

  Frontiers in Virology · 2023
  not yet assessed
• Viral protease NIa-Pro increases MEDIATOR SUBUNIT16 cleavage and plant susceptibility to turnip mosaic virus and its aphid vector <i>Myzus persicae</i> ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Interspecies Transmission from Pigs to Ferrets of Antigenically Distinct Swine H1 Influenza A Viruses with Reduced Reactivity to Candidate Vaccine Virus Antisera as Measures of Relative Zoonotic Risk ↗

  Viruses · 2022 · PMID 36366493
  not yet assessed
• smot: a python package and CLI tool for contextualphylogenetic subsampling ↗

  The Journal of Open Source Software · 2022
  not yet assessed
• Interspecies transmission from pigs to ferrets of antigenically distinct swine H1 influenza A viruses with loss in reactivity to human vaccine virus antisera as measures of relative zoonotic risk ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• classLog: Logistic regression for the classification of genetic sequences ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Overview of recent USDA surveillance data ↗

  2022
  not yet assessed
• rmonad: pipelines you can compute on ↗

  The R Journal · 2022
  not yet assessed
• Foster thy young: enhanced prediction of orphan genes in assembled genomes

  Nucleic Acids Research · 2021 · PMID 34928390
  L1 84/100
• Machine Learning Prediction and Experimental Validation of Antigenic Drift in H3 Influenza A Viruses in Swine ↗

  mSphere · 2021 · PMID 33731472
  not yet assessed
• Landscape of the Dark Transcriptome Revealed Through Re-mining Massive RNA-Seq Data ↗

  Frontiers in Genetics · 2021 · PMID 34484307
  not yet assessed
• Tools for Working with 'Taxonomic' Databases [R package taxizedb version 0.3.0]

  2021
  not yet assessed
• octoFLUshow: an Interactive Tool Describing Spatial and Temporal Trends in the Genetic Diversity of Influenza A Virus in U.S. Swine ↗

  Microbiology Resource Announcements · 2021 · PMID 34913720
  not yet assessed
• Swine Influenza A Viruses and the Tangled Relationship with Humans ↗

  Cold Spring Harbor Perspectives in Medicine · 2020 · PMID 31988203
  not yet assessed
• Taxonomic Information from Around the Web [R package taxize version 0.9.98]

  2020
  not yet assessed
• Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• A Monadic Pipeline System [R package rmonad version 0.7.0]

  2020
  not yet assessed
• <tt>phylostratr</tt> : a framework for phylostratigraphy ↗

  Bioinformatics · 2019 · PMID 30873536
  not yet assessed
• fagin: synteny-based phylostratigraphy and finer classification of young genes ↗

  BMC Bioinformatics · 2019 · PMID 31455236
  not yet assessed
• Landscape of the Dark Transcriptome Revealed through Re-mining Massive RNA-Seq Data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• <tt>synder</tt> : inferring genomic orthologs from synteny maps ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Algorithms for synteny-based phylostratigraphy and gene origin classification

  Iowa State University Digital Repository (Iowa State University) · 2019
  not yet assessed
• Additional file 3: of fagin: synteny-based phylostratigraphy and finer classification of young genes ↗

  Figshare · 2019
  not yet assessed
• Additional file 2: of fagin: synteny-based phylostratigraphy and finer classification of young genes ↗

  Figshare · 2019
  not yet assessed
• phylostratr: A framework for phylostratigraphy ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• arendsee/rhmmer: Zenodo release ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2018
  not yet assessed
• Raising orphans from a metadata morass: A researcher's guide to re-use of public ’omics data ↗

  Plant Science · 2017 · PMID 29362097
  not yet assessed
• A Regulatory Network Analysis of Orphan Genes in Arabidopsis Thaliana

  Bulletin of the American Physical Society · 2017
  not yet assessed
• taxizedb: Offline Access to Taxonomic Databases ↗

  2017
  not yet assessed
• Utilities Parsing 'HMMER' Results [R package rhmmer version 0.1.0]

  2017
  not yet assessed
• ISMB sequence-structure hackathon 2016! ↗

  Faculty of 1000 Research Ltd · 2016
  not yet assessed
• <i>QQS</i> orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions ↗

  Proceedings of the National Academy of Sciences · 2015 · PMID 26554020
  not yet assessed
• A systems biology approach toward understanding seed composition in soybean ↗

  BMC Genomics · 2015 · PMID 25708381
  not yet assessed
• Mitochondrial divergence between slow- and fast-aging garter snakes ↗

  Experimental Gerontology · 2015 · PMID 26403677
  not yet assessed
• A systems biology approach toward understanding seed composition in soybean

  Iowa State University Digital Repository (Iowa State University) · 2015
  not yet assessed
• Coming of age: orphan genes in plants ↗

  Trends in Plant Science · 2014 · PMID 25151064
  not yet assessed
• An Update of DIVERGE Software for Functional Divergence Analysis of Protein Family ↗

  Molecular Biology and Evolution · 2013 · PMID 23589455
  not yet assessed
• Phylogenomic Distance Method for Analyzing Transcriptome Evolution Based on RNA-seq Data ↗

  Genome Biology and Evolution · 2013 · PMID 23940099
  not yet assessed
• taxize: Taxonomic Information from Around the Web ↗

  2012
  not yet assessed