Eve Syrkin Wurtele

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (3)

• Foster thy young: enhanced prediction of orphan genes in assembled genomes.
  2022 L1 84/100
• Betacoronavirus-specific alternate splicing.
  2022 L1 100/100
• pyrpipe: a Python package for RNA-Seq workflows.
  2021 L1 79/100

3 assessed by us (3 reproduced) · 225 not yet assessed — every PubMed paper on record, linked below.

• Importance of De Novo Gene Evolution to Emerging Viral Threats: The ORF10 Strain-Restricted Orphan Gene of SARS-CoV-2 Promotes Pathogenesis ↗

  Molecular Biology and Evolution · 2025 · PMID 41092398
  not yet assessed
• Viral evolution in the cosmos ↗

  Elsevier eBooks · 2025
  not yet assessed
• Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts ↗

  UNC Libraries · 2025
  not yet assessed
• List of contributors ↗

  Elsevier eBooks · 2025
  not yet assessed
• Space radiation damage rescued by inhibition of key spaceflight associated miRNAs ↗

  Nature Communications · 2024 · PMID 38862542
  not yet assessed
• Lethal COVID-19 associates with RAAS-induced inflammation for multiple organ damage including mediastinal lymph nodes ↗

  Proceedings of the National Academy of Sciences · 2024 · PMID 39602262
  not yet assessed
• sChemNET: a deep learning framework for predicting small molecules targeting microRNA function ↗

  Nature Communications · 2024 · PMID 39443444
  not yet assessed
• Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle ↗

  International Journal of Molecular Sciences · 2024 · PMID 39409177
  not yet assessed
• A pan-tissue, pan-disease compendium of human orphan genes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• SARS-CoV-2 ORF10 Promotes COVID-19 Pathogenesis ↗

  SSRN Electronic Journal · 2024
  not yet assessed
• Lethal COVID-19 associates with RAAS-induced inflammation for multiple organ damage including mediastinal lymph nodes. ↗

  UNC Libraries · 2024
  not yet assessed
• Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts ↗

  Science Translational Medicine · 2023 · PMID 37556555
  not yet assessed
• A comprehensive SARS-CoV-2 and COVID-19 review, Part 2: host extracellular to systemic effects of SARS-CoV-2 infection ↗

  European Journal of Human Genetics · 2023 · PMID 37938797
  not yet assessed
• SARS-CoV-2 Orphan Gene ORF10 Contributes to More Severe COVID-19 Disease ↗

  medRxiv · 2023 · PMID 38076862
  not yet assessed
• Lethal COVID-19 Associates With RAAS-Induced Inflammation For Multiple Organ Damage Including Mediastinal Lymph Nodes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• So Long, and Thanks for All the Antagomirs: Space Radiation Damage Rescued by Inhibition of Key Spaceflight Associated miRNAs ↗

  Research Square · 2023
  not yet assessed
• Editorial: Carbon allocation, volume II ↗

  Frontiers in Plant Science · 2023 · PMID 38093992
  not yet assessed
• A comprehensive SARS-CoV-2 and COVID-19 review, Part 1: Intracellular overdrive for SARS-CoV-2 infection ↗

  European Journal of Human Genetics · 2022 · PMID 35577935
  not yet assessed
• System-wide transcriptome damage and tissue identity loss in COVID-19 patients ↗

  Cell Reports Medicine · 2022 · PMID 35233546
  not yet assessed
• The interplay between lncRNAs, RNA-binding proteins and viral genome during SARS-CoV-2 infection reveals strong connections with regulatory events involved in RNA metabolism and immune response ↗

  Theranostics · 2022 · PMID 35664076
  not yet assessed
• Betacoronavirus-specific alternate splicing

  Genomics · 2022 · PMID 35074468
  L1 100/100
• Targeted Down Regulation Of Core Mitochondrial Genes During SARS-CoV-2 Infection ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022 · PMID 35233572
  not yet assessed
• The interplay between lncRNAs, RNA-binding proteins and viral genome during SARS-CoV-2 infection reveals strong connections with regulatory events involved in RNA metabolism and immune response ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• System-wide transcriptome damage and tissue identity loss in COVID-19 patients ↗

  UNC Libraries · 2022
  not yet assessed
• rmonad: pipelines you can compute on ↗

  The R Journal · 2022
  not yet assessed
• The interplay between lncRNAs, RNA-binding proteins and viral genome during SARS-CoV-2 infection reveals strong connections with regulatory events involved in RNA metabolism and immune response ↗

  UNC Libraries · 2022
  not yet assessed
• Accuracy of functional gene community detection in <i>Saccharomyces cerevisiae</i> by maximizing Generalized Modularity Density ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• orfipy: a fast and flexible tool for extracting ORFs ↗

  Bioinformatics · 2021 · PMID 33576786
  not yet assessed
• Role of miR-2392 in driving SARS-CoV-2 infection ↗

  Cell Reports · 2021 · PMID 34624208
  not yet assessed
• Foster thy young: enhanced prediction of orphan genes in assembled genomes

  Nucleic Acids Research · 2021 · PMID 34928390
  L1 84/100
• African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures ↗

  Scientific Reports · 2021 · PMID 33972602
  not yet assessed
• Landscape of the Dark Transcriptome Revealed Through Re-mining Massive RNA-Seq Data ↗

  Frontiers in Genetics · 2021 · PMID 34484307
  not yet assessed
• <tt>pyrpipe</tt> : a Python package for RNA-Seq workflows

  NAR Genomics and Bioinformatics · 2021 · PMID 34085037
  L1 79/100
• Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021 · PMID 33758858
  not yet assessed
• The Great Deceiver: miR-2392’s Hidden Role in Driving SARS-CoV-2 Infection ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021 · PMID 33948587
  not yet assessed
• Betacoronavirus-specific alternate splicing ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021 · PMID 34230929
  not yet assessed
• Role of miR-2392 in driving SARS-CoV-2 infection ↗

  UNC Libraries · 2021
  not yet assessed
• How new genes are born ↗

  eLife · 2020 · PMID 32072921
  not yet assessed
• pyrpipe: a python package for RNA-Seq workflows ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Differential expression of COVID-19-related genes in European Americans and African Americans ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• orfipy: a fast and flexible tool for extracting ORFs ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures ↗

  Research Square · 2020
  not yet assessed
• <tt>phylostratr</tt> : a framework for phylostratigraphy ↗

  Bioinformatics · 2019 · PMID 30873536
  not yet assessed
• MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets ↗

  Nucleic Acids Research · 2019 · PMID 31956905
  not yet assessed
• fagin: synteny-based phylostratigraphy and finer classification of young genes ↗

  BMC Bioinformatics · 2019 · PMID 31455236
  not yet assessed
• MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Landscape of the Dark Transcriptome Revealed through Re-mining Massive RNA-Seq Data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• <tt>synder</tt> : inferring genomic orthologs from synteny maps ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Decision letter: Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes ↗

  2019
  not yet assessed
• Additional file 3: of fagin: synteny-based phylostratigraphy and finer classification of young genes ↗

  Figshare · 2019
  not yet assessed
• Additional file 2: of fagin: synteny-based phylostratigraphy and finer classification of young genes ↗

  Figshare · 2019
  not yet assessed
• <i><scp>QQS</scp></i> orphan gene and its interactor <i><scp>NF</scp>‐<scp>YC</scp>4</i> reduce susceptibility to pathogens and pests ↗

  Plant Biotechnology Journal · 2018 · PMID 29878511
  not yet assessed
• Statistically Significant Differences in Composition of Petroleum Crude Oils Revealed by Volcano Plots Generated from Ultrahigh Resolution Fourier Transform Ion Cyclotron Resonance Mass Spectra ↗

  Energy & Fuels · 2018
  not yet assessed
• Comprehensive transcriptome analyses correlated with untargeted metabolome reveal differentially expressed pathways in response to cell wall alterations ↗

  Plant Molecular Biology · 2018 · PMID 29502299
  not yet assessed
• phylostratr: A framework for phylostratigraphy ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Comparative Proteomics of Rubber Latex Revealed Multiple Protein Species of REF/SRPP Family Respond Diversely to Ethylene Stimulation among Different Rubber Tree Clones ↗

  International Journal of Molecular Sciences · 2017 · PMID 28468331
  not yet assessed
• Raising orphans from a metadata morass: A researcher's guide to re-use of public ’omics data ↗

  Plant Science · 2017 · PMID 29362097
  not yet assessed
• A Regulatory Network Analysis of Orphan Genes in Arabidopsis Thaliana

  Bulletin of the American Physical Society · 2017
  not yet assessed
• Integrating metabolomics and transcriptomics data to discover a biocatalyst that can generate the amine precursors for alkamide biosynthesis ↗

  The Plant Journal · 2016 · PMID 27497272
  not yet assessed
• A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence ↗

  Frontiers in Plant Science · 2016 · PMID 27462324
  not yet assessed
• Microbial Community and Chemical Characteristics of Swine Manure during Maturation ↗

  Journal of Environmental Quality · 2016 · PMID 27380061
  not yet assessed
• Differentially Expressed Genes in Hypericin-Containing Hypericum perforatum Leaf Tissues as Revealed by De Novo Assembly of RNA-Seq ↗

  Plant Molecular Biology Reporter · 2016
  not yet assessed
• Identification and functional characterization of HbOsmotin from Hevea brasiliensis ↗

  Plant Physiology and Biochemistry · 2016 · PMID 27710866
  not yet assessed
• A resource for metabolomics and transcriptomics analysis ↗

  Faculty of 1000 Research Ltd · 2016
  not yet assessed
• A resource for metabolomics and transcriptomics analysis ↗

  Faculty of 1000 Research Ltd · 2016
  not yet assessed
• <i>QQS</i> orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions ↗

  Proceedings of the National Academy of Sciences · 2015 · PMID 26554020
  not yet assessed
• A systems biology approach toward understanding seed composition in soybean ↗

  BMC Genomics · 2015 · PMID 25708381
  not yet assessed
• ArcA Controls Metabolism, Chemotaxis, and Motility Contributing to the Pathogenicity of Avian Pathogenic Escherichia coli ↗

  Infection and Immunity · 2015 · PMID 26099584
  not yet assessed
• Patterns of Metabolite Changes Identified from Large-Scale Gene Perturbations in Arabidopsis Using a Genome-Scale Metabolic Network   ↗

  PLANT PHYSIOLOGY · 2015 · PMID 25670818
  not yet assessed
• Modifications of membrane lipids in response to wounding of <i>Arabidopsis thaliana</i> leaves ↗

  Plant Signaling & Behavior · 2015 · PMID 26252884
  not yet assessed
• Modifications of membrane lipids in response to wounding of <i>Arabidopsis thaliana</i> leaves ↗

  Figshare · 2015
  not yet assessed
• Modifications of membrane lipids in response to wounding of <i>Arabidopsis thaliana</i> leaves ↗

  Figshare · 2015
  not yet assessed
• Modifications of membrane lipids in response to wounding of <i>Arabidopsis thaliana</i> leaves ↗

  Figshare · 2015
  not yet assessed
• Modifications of membrane lipids in response to wounding of <i>Arabidopsis thaliana</i> leaves ↗

  Figshare · 2015
  not yet assessed
• Modifications of membrane lipids in response to wounding of <i>Arabidopsis thaliana</i> leaves ↗

  Figshare · 2015
  not yet assessed
• Modifications of membrane lipids in response to wounding of <i>Arabidopsis thaliana</i> leaves ↗

  Figshare · 2015
  not yet assessed
• A systems biology approach toward understanding seed composition in soybean

  Iowa State University Digital Repository (Iowa State University) · 2015
  not yet assessed
• Coming of age: orphan genes in plants ↗

  Trends in Plant Science · 2014 · PMID 25151064
  not yet assessed
• The<i>QQS</i>orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean ↗

  Plant Biotechnology Journal · 2014 · PMID 25146936
  not yet assessed
• Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis     ↗

  PLANT PHYSIOLOGY · 2014 · PMID 24828308
  not yet assessed
• A global approach to analysis and interpretation of metabolic data for plant natural product discovery ↗

  Natural Product Reports · 2013 · PMID 23447050
  not yet assessed
• Identification and biosynthesis of acylphloroglucinols in <i>Hypericum gentianoides</i> ↗

  Physiologia Plantarum · 2013 · PMID 23600727
  not yet assessed
• Comprehensive analysis of correlation coefficients estimated from pooling heterogeneous microarray data ↗

  BMC Bioinformatics · 2013 · PMID 23822712
  not yet assessed
• Holocarboxylase Synthetase 1 Physically Interacts with Histone H3 in<i>Arabidopsis</i> ↗

  Scientifica · 2013 · PMID 24278788
  not yet assessed
• Automatic extraction of biomolecular interactions: an empirical approach ↗

  BMC Bioinformatics · 2013 · PMID 23883165
  not yet assessed
• Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis ↗

  Nature · 2012 · PMID 22622584
  not yet assessed
• Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of “Unknown Function” ↗

  Frontiers in Plant Science · 2012 · PMID 22645570
  not yet assessed
• Functional Identification of Valerena-1,10-diene Synthase, a Terpene Synthase Catalyzing a Unique Chemical Cascade in the Biosynthesis of Biologically Active Sesquiterpenes in Valeriana officinalis ↗

  Journal of Biological Chemistry · 2012 · PMID 23243312
  not yet assessed
• Medicinal Plants: A Public Resource for Metabolomics and Hypothesis Development ↗

  Metabolites · 2012 · PMID 24957774
  not yet assessed
• MetNet Online: a novel integrated resource for plant systems biology ↗

  BMC Bioinformatics · 2012 · PMID 23066841
  not yet assessed
• Massive Human Co‐Expression Network and Its Medical Applications ↗

  Chemistry & Biodiversity · 2012 · PMID 22589089
  not yet assessed
• Use of Metabolomics and Transcriptomics to Gain Insights into the Regulation and Biosynthesis of Medicinal Compounds: Hypericum as a Model ↗

  2012
  not yet assessed
• Meta!Blast computer game: a pipeline from science to 3D art to education ↗

  Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE · 2012
  not yet assessed
• BirdsEyeView (BEV): graphical overviews of experimental data ↗

  BMC Bioinformatics · 2012 · PMID 23046276
  not yet assessed
• Genetic dissection of methylcrotonyl CoA carboxylase indicates a complex role for mitochondrial leucine catabolism during seed development and germination ↗

  The Plant Journal · 2011 · PMID 22211474
  not yet assessed
• AtRabD2b and AtRabD2c have overlapping functions in pollen development and pollen tube growth ↗

  BMC Plant Biology · 2011 · PMID 21269510
  not yet assessed
• Enabling educators to customize the game environment

  2011
  not yet assessed
• PlantMetabolomics.org: A Web Portal for Plant Metabolomics Experiments ↗

  PLANT PHYSIOLOGY · 2010 · PMID 20147492
  not yet assessed
• Reverse-Genetic Analysis of the Two Biotin-Containing Subunit Genes of the Heteromeric Acetyl-Coenzyme A Carboxylase in Arabidopsis Indicates a Unidirectional Functional Redundancy       ↗

  PLANT PHYSIOLOGY · 2010 · PMID 21030508
  not yet assessed
• Enrichment of Echinacea angustifolia with Bauer Alkylamide 11 and Bauer Ketone 23 Increased Anti-inflammatory Potential through Interference with COX-2 Enzyme Activity ↗

  Journal of Agricultural and Food Chemistry · 2010 · PMID 20681645
  not yet assessed
• MetNetGE: interactive views of biological networks and ontologies ↗

  BMC Bioinformatics · 2010 · PMID 20849585
  not yet assessed
• Meta!Blast: A Serious Game to Explore the Complexities of Structural and Metabolic Cell Biology ↗

  2010
  not yet assessed
• Visualizing Multivariate Hierarchic Data Using Enhanced Radial Space-Filling Layout ↗

  Lecture notes in computer science · 2010
  not yet assessed
• MetNetAPI: A flexible method to access and manipulate biological network data from MetNet ↗

  BMC Research Notes · 2010 · PMID 21083943
  not yet assessed
• Echinacea-induced cytosolic Ca2+ elevation in HEK293 ↗

  BMC Complementary and Alternative Medicine · 2010 · PMID 21092239
  not yet assessed
• Hypericum Gentianoides Produces Bioactive Compounds in Schizogenously Formed Glands ↗

  Microscopy and Microanalysis · 2010
  not yet assessed
• Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves ↗

  The Plant Journal · 2009 · PMID 19154206
  not yet assessed
• Acetyl-CoA—Life at the metabolic nexus ↗

  Plant Science · 2009
  not yet assessed
• <i>Hypericum</i>in infection: Identification of anti-viral and anti-inflammatory constituents ↗

  Pharmaceutical Biology · 2009 · PMID 19907671
  not yet assessed
• PathBinder – text empirics and automatic extraction of biomolecular interactions ↗

  BMC Bioinformatics · 2009 · PMID 19811683
  not yet assessed
• Endogenous Levels of<i>Echinacea</i>Alkylamides and Ketones Are Important Contributors to the Inhibition of Prostaglandin E2 and Nitric Oxide Production in Cultured Macrophages ↗

  Journal of Agricultural and Food Chemistry · 2009 · PMID 19807154
  not yet assessed
• Alcohol extract of Echinacea pallida reverses stress-delayed wound healing in mice ↗

  Phytomedicine · 2009 · PMID 19303756
  not yet assessed
• Echinacea tennesseensis ethanol tinctures harbor cytokine- and proliferation-enhancing capacities ↗

  Cytokine · 2009 · PMID 19286391
  not yet assessed
• MetNetGE: Visualizing biological networks in hierarchical views and 3D tiered layouts ↗

  2009
  not yet assessed
• GeneNarrator: Mining the Literaturome for Relations Among Genes ↗

  Journal of Proteomics & Bioinformatics · 2009
  not yet assessed
• Materials and methods for the alteration of enzyme and acetyl CoA levels in plants

  Iowa State University Digital Repository (Iowa State University) · 2009
  not yet assessed
• Direct profiling and imaging of plant metabolites in intact tissues by using colloidal graphite‐assisted laser desorption ionization mass spectrometry ↗

  The Plant Journal · 2008 · PMID 18397372
  not yet assessed
• Regulon organization of Arabidopsis ↗

  BMC Plant Biology · 2008 · PMID 18826618
  not yet assessed
• Articulation of three core metabolic processes in Arabidopsis: Fatty acid biosynthesis, leucine catabolism and starch metabolism ↗

  BMC Plant Biology · 2008 · PMID 18616834
  not yet assessed
• Echinacea increases arginase activity and has anti-inflammatory properties in RAW 264.7 macrophage cells, indicative of alternative macrophage activation ↗

  Journal of Ethnopharmacology · 2008 · PMID 19111603
  not yet assessed
• Echinacea in infection ↗

  American Journal of Clinical Nutrition · 2008 · PMID 18258644
  not yet assessed
• Quantitative analysis of short-chain acyl-coenzymeAs in plant tissues by LC–MS–MS electrospray ionization method ↗

  Journal of Chromatography B · 2008 · PMID 19157998
  not yet assessed
• Characterizing the Metabolic Fingerprint and Anti-inflammatory Activity of <i>Hypericum gentianoides</i> ↗

  Journal of Agricultural and Food Chemistry · 2008 · PMID 18512936
  not yet assessed
• Metabolic Profiling of<i>Echinacea</i>Genotypes and a Test of Alternative Taxonomic Treatments ↗

  Planta Medica · 2008 · PMID 19101884
  not yet assessed
• Pseudohypericin is necessary for the light-activated inhibition of prostaglandin E2 pathways by a 4 component system mimicking an Hypericum perforatum fraction ↗

  Phytochemistry · 2008 · PMID 18707743
  not yet assessed
• <b>explorase</b>: Multivariate Exploratory Analysis and Visualization for Systems Biology ↗

  Journal of Statistical Software · 2008
  not yet assessed
• A symbolic computing approach to evidence code mapping for biological data integration and subjective analysis for reference associations for metabolic pathways ↗

  2008
  not yet assessed
• PathBinderH: a tool for sentence-focused, plant taxonomy-sensitive access to the biological literature.

  2008
  not yet assessed
• Echinacea in infection1–4

  Iowa State University Digital Repository (Iowa State University) · 2008
  not yet assessed
• Expanding the utilization of sustainable plant products in aquafeeds: a review ↗

  Aquaculture Research · 2007
  not yet assessed
• Enhancement of Innate and Adaptive Immune Functions by Multiple <i>Echinacea</i> Species ↗

  Journal of Medicinal Food · 2007 · PMID 17887935
  not yet assessed
• Inhibition of Prostaglandin E₂ Production by Anti-inflammatory <i>Hypericum perforatum</i> Extracts and Constituents in RAW264.7 Mouse Macrophage Cells ↗

  Journal of Agricultural and Food Chemistry · 2007 · PMID 17696442
  not yet assessed
• Concepts in Plant Metabolomics ↗

  2007
  not yet assessed
• Genome wide co-expression among the starch debranching enzyme genes AtISA1, AtISA2, and AtISA3 in Arabidopsis thaliana ↗

  Journal of Experimental Botany · 2007 · PMID 17890231
  not yet assessed
• <i>Echinacea</i>Species and Alkamides Inhibit Prostaglandin E₂Production in RAW264.7 Mouse Macrophage Cells ↗

  Journal of Agricultural and Food Chemistry · 2007 · PMID 17696440
  not yet assessed
• Alcohol extracts of Echinacea inhibit production of nitric oxide and tumor necrosis factor-alpha by macrophages<i>in vitro</i> ↗

  Food and Agricultural Immunology · 2007 · PMID 18458735
  not yet assessed
• MetNet: Systems Biology Tools for Arabidopsis ↗

  2007
  not yet assessed
• The Synthesis and Natural Distribution of the Major Ketone Constituents in Echinacea pallida ↗

  Molecules · 2007 · PMID 17851399
  not yet assessed
• MetaBlast! Virtual Cell: A Pedagogical Convergence between Game Design and Science Education

  Iowa State University Digital Repository (Iowa State University) · 2007
  not yet assessed
• A tool for comprehensive analysis of protein interaction networks.

  BIOCOMP · 2007
  not yet assessed
• Identification of Bauer alkamide #8 in urine and feces of human subjects ingesting Echinacea root powder ↗

  The FASEB Journal · 2007
  not yet assessed
• Light‐Independent Anti‐Inflammatory Activity of Hypericum perforatum Extracts ↗

  The FASEB Journal · 2007
  not yet assessed
• Year-and-a-Half Old, Dried<i>Echinacea</i>Roots Retain Cytokine-Modulating Capabilities in an<i>in vitro</i>Human Older Adult Model of Influenza Vaccination ↗

  Planta Medica · 2006 · PMID 17021999
  not yet assessed
• Hierarchical visualization of metabolic networks using virtual reality ↗

  2006
  not yet assessed
• exploRase: Exploratory Data Analysis of Systems Biology Data ↗

  2006
  not yet assessed
• Synthesis and Natural Distribution of Anti-inflammatory Alkamides from Echinacea ↗

  Molecules · 2006 · PMID 17971752
  not yet assessed
• Creating, Modeling, and Visualizing Metabolic Networks ↗

  Kluwer Academic Publishers eBooks · 2006
  not yet assessed
• Year-and-a-Half Old, Dried <i>Echinacea</i> Roots Retain Cytokine-Modulating Capabilities in an <i>in vitro</i> Human Older Adult Model of Influenza Vaccination ↗

  Planta Medica · 2006
  not yet assessed
• Inhibition of COX‐2 by Echinacea extracts and alkamides ↗

  The FASEB Journal · 2006
  not yet assessed
• Modeling Gene Expression Networks Using Fuzzy Logic ↗

  IEEE Transactions on Systems Man and Cybernetics Part B (Cybernetics) · 2005 · PMID 16366260
  not yet assessed
• Integration of metabolic networks and gene expression in virtual reality ↗

  Bioinformatics · 2005 · PMID 16020466
  not yet assessed
• Using the biological taxonomy to access biological literature with PathBinderH ↗

  Computer applications in the biosciences · 2005 · PMID 15769838
  not yet assessed
• PubMed Assistant: a biologist-friendly interface for enhanced PubMed search ↗

  Bioinformatics · 2005 · PMID 16332704
  not yet assessed
• Using Virtual Reality to Understand Complex Metabolic Networks

  2005
  not yet assessed
• Potential of metabolomics as a functional genomics tool ↗

  Trends in Plant Science · 2004 · PMID 15337491
  not yet assessed
• A proposed framework for the description of plant metabolomics experiments and their results ↗

  Nature Biotechnology · 2004 · PMID 15583675
  not yet assessed
• Reverse Genetic Characterization of Cytosolic Acetyl-CoA Generation by ATP-Citrate Lyase in Arabidopsis ↗

  The Plant Cell · 2004 · PMID 15608338
  not yet assessed
• Diacetylenic isobutylamides of Echinacea: synthesis and natural distribution ↗

  Phytochemistry · 2004 · PMID 15381412
  not yet assessed
• Identifying differentially expressed genes in unreplicated multiple-treatment microarray timecourse experiments ↗

  Computational Statistics & Data Analysis · 2004
  not yet assessed
• Fuzzy modeling of metabolic maps in MetNetDB ↗

  IEEE Annual Meeting of the Fuzzy Information, 2004. Processing NAFIPS '04. · 2004
  not yet assessed
• Plant biotin-containing carboxylases ↗

  Archives of Biochemistry and Biophysics · 2003 · PMID 12781773
  not yet assessed
• MetNet: software to build and model the biogenetic lattice of <i>Arabidopsis</i> ↗

  Comparative and Functional Genomics · 2003 · PMID 18629120
  not yet assessed
• The Role of Biotin in Regulating 3-Methylcrotonyl-Coenzyme A Carboxylase Expression in Arabidopsis ↗

  PLANT PHYSIOLOGY · 2003 · PMID 12644697
  not yet assessed
• Creating Metabolic Network Models using Text Mining and Expert Knowledge ↗

  WORLD SCIENTIFIC eBooks · 2003
  not yet assessed
• Molecular Characterization of a Heteromeric ATP-Citrate Lyase That Generates Cytosolic Acetyl-Coenzyme A in Arabidopsis, ↗

  PLANT PHYSIOLOGY · 2002 · PMID 12376641
  not yet assessed
• Functional Genomics: High-Throughput mRNA, Protein, and Metabolite Analyses ↗

  Metabolic Engineering · 2002 · PMID 11800579
  not yet assessed
• Metabolic and Environmental Regulation of 3-Methylcrotonyl-Coenzyme A Carboxylase Expression in Arabidopsis ↗

  PLANT PHYSIOLOGY · 2002 · PMID 12068107
  not yet assessed
• Creating metabolic and regulatory network models using fuzzy cognitive maps ↗

  2002
  not yet assessed
• MINING MEDLINE: ABSTRACTS, SENTENCES, OR PHRASES? ↗

  2001 · PMID 11928487
  not yet assessed
• The Role of Pyruvate Dehydrogenase and Acetyl-Coenzyme A Synthetase in Fatty Acid Synthesis in Developing Arabidopsis Seeds ↗

  PLANT PHYSIOLOGY · 2000 · PMID 10859180
  not yet assessed
• Coordinate Regulation of the Nuclear and Plastidic Genes Coding for the Subunits of the Heteromeric Acetyl-Coenzyme A Carboxylase ↗

  PLANT PHYSIOLOGY · 2000 · PMID 10759501
  not yet assessed
• Molecular biology of acetyl-CoA metabolism ↗

  Biochemical Society Transactions · 2000 · PMID 11171136
  not yet assessed
• Molecular Characterization of the Non-biotin-containing Subunit of 3-Methylcrotonyl-CoA Carboxylase ↗

  Journal of Biological Chemistry · 2000 · PMID 10681539
  not yet assessed
• Molecular biology of cytosolic acetyl-CoA generation ↗

  Biochemical Society Transactions · 2000 · PMID 11171137
  not yet assessed
• Characterization of 3-Methylcrotonyl-CoA Carboxylase from Plants ↗

  Methods in enzymology on CD-ROM/Methods in enzymology · 2000 · PMID 10989437
  not yet assessed
• Molecular biology of cytosolic acetyl-CoA generation ↗

  Biochemical Society Transactions · 2000
  not yet assessed
• Molecular biology of acetyl-CoA metabolism ↗

  Biochemical Society Transactions · 2000
  not yet assessed
• Geranoyl-CoA Carboxylase: A Novel Biotin-Containing Enzyme in Plants ↗

  Archives of Biochemistry and Biophysics · 1999 · PMID 9917324
  not yet assessed
• 3-Methylcrotonyl-Coenzyme A Carboxylase Is a Component of the Mitochondrial Leucine Catabolic Pathway in Plants ↗

  PLANT PHYSIOLOGY · 1998 · PMID 9847087
  not yet assessed
• Tissue distribution of acetyl-CoA carboxylase in leaves of leek (Allium porrum L.) ↗

  Journal of Plant Physiology · 1998
  not yet assessed
• Biochemical and Molecular Biological Characterization of CAC2, the Arabidopsis thaliana Gene Coding for the Biotin Carboxylase Subunit of the Plastidic Acetyl-Coenzyme A Carboxylase ↗

  PLANT PHYSIOLOGY · 1997 · PMID 9414551
  not yet assessed
• Structure of the CAC1 Gene and in Situ Characterization of Its Expression (The Arabidopsis thaliana Gene Coding for the Biotin-Containing Subunit of the Plastidic Acetyl-Coenzyme A Carboxylase) ↗

  PLANT PHYSIOLOGY · 1997 · PMID 9046589
  not yet assessed
• zrp2: a novel maize gene whose mRNA accumulates in the root cortex and mature stems ↗

  Plant Molecular Biology · 1997 · PMID 9349260
  not yet assessed
• Molecular Biology of Biotin-Containing Enzymes Required in Lipid Metabolism ↗

  1997
  not yet assessed
• Characterization of the cDNA and Gene Coding for the Biotin Synthase of Arabidopsis thaliana ↗

  PLANT PHYSIOLOGY · 1996 · PMID 8819873
  not yet assessed
• The embryo-specific EMB-1 protein of Daucus carota is flexible and unstructured in solution ↗

  Plant Science · 1996
  not yet assessed
• Reduction of growth and acetyl-CoA carboxylase activity by expression of a chimeric streptavidin gene inEscherichia coli ↗

  Applied Microbiology and Biotechnology · 1996 · PMID 8867633
  not yet assessed
• Reduction of growth and acetyl-CoA carboxylase activity by expression of a chimeric streptavidin gene in Escherichia coli ↗

  Applied Microbiology and Biotechnology · 1996
  not yet assessed
• Genomic Organization of 251 kDa Acetyl-CoA Carboxylase Genes in Arabidopsis: Tandem Gene Duplication has Made Two Differentially Expressed Isozymes ↗

  Plant and Cell Physiology · 1995 · PMID 7551584
  not yet assessed
• Molecular Cloning and Characterization of the cDNA Coding for the Biotin-Containing Subunit of the Chloroplastic Acetyl-Coenzyme A Carboxylase ↗

  PLANT PHYSIOLOGY · 1995 · PMID 7480350
  not yet assessed
• Molecular Cloning of the Biotinylated Subunit of 3-Methylcrotonyl-Coenzyme A Carboxylase of Arabidopsis thaliana ↗

  PLANT PHYSIOLOGY · 1995 · PMID 7716229
  not yet assessed
• Regulation of [beta]-Methylcrotonyl-Coenzyme A Carboxylase Activity by Biotinylation of the Apoenzyme ↗

  PLANT PHYSIOLOGY · 1995 · PMID 12228532
  not yet assessed
• A<scp>ccumulation of the</scp> ZRP3 <scp>m</scp>RNA <scp>in the root and coleorhiza of germinating maize</scp> (<i>Z<scp>emays</scp></i>, P<scp>oaceae</scp>) ↗

  American Journal of Botany · 1995
  not yet assessed
• Biochemical and Molecular Biological Characterization of Acetyl-CoA Carboxylases ↗

  1995
  not yet assessed
• Biochemical and Molecular Biological Characterization of Biotinylated Proteins of Plants ↗

  1995
  not yet assessed
• BIOCHEMICALAND MOLECULARBIOLOGICALCHARACTERIZATIONOFACETYL-CoA CARBOXYLASES

  1995
  not yet assessed
• Accumulation of the ZRP3 mRNA in the Root and Coleorhiza of Germinating Maize (Zea mays, Poaceae) ↗

  American Journal of Botany · 1995
  not yet assessed
• Purification and Characterization of 3-Methylcrotonyl-Coenzyme-A Carboxylase from Leaves of Zea mays ↗

  Archives of Biochemistry and Biophysics · 1994 · PMID 8161223
  not yet assessed
• Abscisic acid is present in liverworts ↗

  Phytochemistry · 1994
  not yet assessed
• Molecular cloning and characterization of the cDNA coding for the biotin-containing subunit of 3-methylcrotonoyl-CoA carboxylase: identification of the biotin carboxylase and biotin-carrier domains. ↗

  Proceedings of the National Academy of Sciences · 1994 · PMID 8016064
  not yet assessed
• Accumulation of petroselinic acid in developing somatic carrot embryos ↗

  Phytochemistry · 1994
  not yet assessed
• Molecular cloning of cDNAs and genes coding for beta-methylcrotonyl-CoA carboxylase of tomato. ↗

  Journal of Biological Chemistry · 1994 · PMID 8163472
  not yet assessed
• An mRNA Putatively Coding for an O-Methyltransferase Accumulates Preferentially in Maize Roots and Is Located Predominantly in the Region of the Endodermis ↗

  PLANT PHYSIOLOGY · 1993 · PMID 8278520
  not yet assessed
• Characterization of a Gene That Is Expressed Early in Somatic Embryogenesis of Daucus carota ↗

  PLANT PHYSIOLOGY · 1993 · PMID 8108498
  not yet assessed
• Purification and Characterization of 3-Methylcrotonyl-CoA Carboxylase from Somatic Embryos of Daucus carota ↗

  Archives of Biochemistry and Biophysics · 1993 · PMID 8393642
  not yet assessed
• Group I LEA homologs are present in vascular and non-vascular land plants

  1993
  not yet assessed
• An mRNA that specifically accumulates in maize roots delineates a novel subset of developing cortical cells ↗

  Plant Molecular Biology · 1992 · PMID 1463822
  not yet assessed
• Differential Accumulation of Biotin Enzymes during Carrot Somatic Embryogenesis ↗

  PLANT PHYSIOLOGY · 1992 · PMID 16669096
  not yet assessed
• Plants contain multiple biotin enzymes: Discovery of 3-methylcrotonyl-CoA carboxylase, propionyl-CoA carboxylase and pyruvate carboxylase in the plant kingdom ↗

  Archives of Biochemistry and Biophysics · 1990 · PMID 2321957
  not yet assessed
• Sequence of EMB–1, an mRNA accumulating specifically in embryos of carrot ↗

  Nucleic Acids Research · 1990 · PMID 2339072
  not yet assessed
• Expression of streptavidin gene in bacteria and plants

  Plant Physiology, Supplement; (USA) · 1990
  not yet assessed
• A simple, efficient method for the Agrobacterium-mediated transformation of carrot callus cells ↗

  Plant Science · 1989
  not yet assessed
• Isolation and characterization of a tomato cDNA clone which codes for a salt-induced protein ↗

  Plant Molecular Biology · 1988 · PMID 24277588
  not yet assessed
• Comparison of Starch and ADP-Glucose Pyrophosphorylase Levels in Nonembryogenic Cells and Developing Embryos from Induced Carrot Cultures ↗

  PLANT PHYSIOLOGY · 1988 · PMID 16665929
  not yet assessed
• Quantitation of Starch and ADP-Glucose Pyrophosphorylase in non-Embryogenic Cells and Embryogenic Cell Clusters from Carrot Suspension Cultures ↗

  Journal of Plant Physiology · 1988
  not yet assessed
• Propagation of an elite high biomass-producing genotype of Atriplex canescens by axillary enhancement ↗

  Biomass · 1987
  not yet assessed
• Acetyl-CoA Carboxylase and Biotin-containing Proteins in Carrot Somatic Embryogenesis ↗

  1987
  not yet assessed
• Enzymes of Glucose Oxidation in Leaf Tissues ↗

  PLANT PHYSIOLOGY · 1986 · PMID 16665059
  not yet assessed
• Natural Plant Chemicals: Sources of Industrial and Medicinal Materials ↗

  Science · 1985 · PMID 3890182
  not yet assessed
• Subcellular and Developmental Distribution of β-Cyanoalanine Synthase in Barley Leaves ↗

  PLANT PHYSIOLOGY · 1985 · PMID 16664231
  not yet assessed
• Use of streptavidin to detect biotin-containing proteins in plants ↗

  Analytical Biochemistry · 1985 · PMID 2866733
  not yet assessed
• Tissue Distribution of β-Cyanoalanine Synthase in Leaves ↗

  PLANT PHYSIOLOGY · 1984 · PMID 16663772
  not yet assessed
• Tissue Distribution of Acetyl-Coenzyme A Carboxylase in Leaves ↗

  PLANT PHYSIOLOGY · 1984 · PMID 16663756
  not yet assessed
• Subcellular distribution of acetyl-coenzyme A carboxylase in mesophyll cells of barley and sorghum leaves ↗

  Archives of Biochemistry and Biophysics · 1984 · PMID 6151378
  not yet assessed
• Tissue Distribution of Acetyl-Coenzyme A Carboxylase in

  1984
  not yet assessed
• Subcellular Localization of a UDP-Glucose:Aldehyde Cyanohydrin β-Glucosyl Transferase in Epidermal Plastids of <i>Sorghum</i> Leaf Blades ↗

  PLANT PHYSIOLOGY · 1982 · PMID 16662753
  not yet assessed
• Subcellular Localization of a UDP-Glucose:Aldehyde Cyanohydrin

  1982
  not yet assessed
• Gibberellin biosynthesis in seedling shoots of maize.

  Dissertation Abstracts International, B · 1980
  not yet assessed