Diogo M. Ribeiro

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.
  2021 L1 100/100

1 assessed by us (1 reproduced) · 41 not yet assessed — every PubMed paper on record, linked below.

• Leveraging large-scale biobank EHRs to enhance pharmacogenetics of cardiometabolic disease medications ↗

  Nature Communications · 2025 · PMID 40133288
  not yet assessed
• Noncoding rare variant associations with blood traits in 166,740 UK Biobank genomes ↗

  Nature Genetics · 2025 · PMID 40770577
  not yet assessed
• Leveraging large-scale biobank EHRs to enhance pharmacogenetics of cardiometabolic disease medications ↗

  medRxiv · 2024 · PMID 38633781
  not yet assessed
• Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank ↗

  Nature Genetics · 2023 · PMID 37386248
  not yet assessed
• Structural and functional brain correlates of suicidal ideation and behaviors in depression: A scoping review of MRI studies ↗

  Progress in Neuro-Psychopharmacology and Biological Psychiatry · 2023 · PMID 37207727
  not yet assessed
• Genetic variation in cis-regulatory domains suggests cell type-specific regulatory mechanisms in immunity ↗

  Communications Biology · 2023 · PMID 36977773
  not yet assessed
• Multimodal single cell analysis infers widespread enhancer co-activity in a lymphoblastoid cell line ↗

  Communications Biology · 2023 · PMID 37237005
  not yet assessed
• Non-coding rare variant associations with blood traits on 166 740 UK Biobank genomes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Parent-of-Origin inference for biobanks ↗

  Nature Communications · 2022 · PMID 36335127
  not yet assessed
• Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis ↗

  Communications Biology · 2022 · PMID 36028576
  not yet assessed
• Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers ↗

  Nature Communications · 2022 · PMID 35410466
  not yet assessed
• Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Correction: MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni ↗

  PLoS neglected tropical diseases · 2022 · PMID 35666710
  not yet assessed
• Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank ↗

  Research Square · 2022
  not yet assessed
• Genetic variation in correlated regulatory region of Immunity ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Genetic variation in correlated regulatory regions of immunity ↗

  Research Square · 2022
  not yet assessed
• Widespread enhancer co-activity identified by multimodal single cell analysis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Efficient phasing and imputation of low-coverage sequencing data using large reference panels ↗

  Nature Genetics · 2021 · PMID 33414550
  not yet assessed
• Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome

  Nature Communications · 2021 · PMID 34561431
  L1 100/100
• The molecular basis, genetic control and pleiotropic effects of local gene co-expression ↗

  Nature Communications · 2021 · PMID 34376650
  not yet assessed
• Publisher Correction: Efficient phasing and imputation of low-coverage sequencing data using large reference panels ↗

  Nature Genetics · 2021 · PMID 33473199
  not yet assessed
• Parent-of-origin effects in the UK Biobank ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Parent-of-origin effects in the UK Biobank ↗

  Research Square · 2021
  not yet assessed
• The role of 3′UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization ↗

  Nucleic Acids Research · 2020 · PMID 32484544
  not yet assessed
• Efficient phasing and imputation of low-coverage sequencing data using large reference panels ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome ↗

  medRxiv · 2020
  not yet assessed
• The molecular basis, genetic control and pleiotropic effects of local gene co-expression ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Understanding protein multifunctionality: from short linear motifs to cellular functions ↗

  Cellular and Molecular Life Sciences · 2019 · PMID 31432235
  not yet assessed
• Post-transcriptional regulatory patterns revealed by protein-RNA interactions ↗

  Scientific Reports · 2019 · PMID 30867517
  not yet assessed
• The role of 3’UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Comparative genomics of the major parasitic worms ↗

  Nature Genetics · 2018 · PMID 30397333
  not yet assessed
• MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins ↗

  Nucleic Acids Research · 2018 · PMID 30371819
  not yet assessed
• Identification of lineage-specific gene family expansions in a database of gene families ↗

  Protocol Exchange · 2018
  not yet assessed
• Discovery of the role of protein-RNA interactions in protein multifunctionality and cellular complexity ↗

  2018
  not yet assessed
• Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs ↗

  Nucleic Acids Research · 2017 · PMID 29165713
  not yet assessed
• MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni ↗

  PLoS neglected tropical diseases · 2017 · PMID 28542189
  not yet assessed
• The genomic basis of parasitism in the Strongyloides clade of nematodes ↗

  Nature Genetics · 2016 · PMID 26829753
  not yet assessed
• The genome of the sparganosis tapeworm Spirometra erinaceieuropaeiisolated from the biopsy of a migrating brain lesion ↗

  Genome biology · 2014 · PMID 25413302
  not yet assessed
• The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion ↗

  Genome biology · 2014
  not yet assessed
• Active pharmaceutical ingredients based on salicylate ionic liquids: insights into the evaluation of pharmaceutical profiles ↗

  New Journal of Chemistry · 2013
  not yet assessed
• Imidazolium ionic liquids as solvents of pharmaceuticals: Influence on HSA binding and partition coefficient of nimesulide ↗

  International Journal of Pharmaceutics · 2012 · PMID 23287776
  not yet assessed