Allen Zhu

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• RADAR: differential analysis of MeRIP-seq data with a random effect model.⚑
  2019 L1 10/100 ⚑

1 assessed by us (0 reproduced) · 48 not yet assessed — every PubMed paper on record, linked below.

• Homologous recombination deficiency and hemizygosity drive resistance in breast cancer ↗

  Nature · 2026 · PMID 41781623
  not yet assessed
• PAX8 ‐positive conventional urothelial carcinomas of the urinary bladder and their distinct molecular profiles – A clinicopathologic study of 101 consecutive cases with next‐generation sequencing in 20 cases ↗

  Histopathology · 2026 · PMID 41652309
  not yet assessed
• Humeral Shaft Stress Fracture Completion in a Weight Lifter ↗

  JBJS Case Connector · 2025 · PMID 39820098
  not yet assessed
• m6A RNA methylation regulates mitochondrial function ↗

  Human Molecular Genetics · 2024 · PMID 38483349
  not yet assessed
• Epitranscriptomic reader YTHDF2 regulates SEK1(MAP2K4)-JNK-cJUN inflammatory signaling in astrocytes during neurotoxic stress ↗

  iScience · 2024 · PMID 39252959
  not yet assessed
• Epitranscriptomic Reader YTHDF2 Regulates SEK1( MAP2K4 )-JNK-cJUN Inflammatory Signaling in Astrocytes during Neurotoxic Stress ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 38328119
  not yet assessed
• Protocol for detecting RBM33-binding sites in HEK293T cells using PAR-CLIP-seq ↗

  STAR Protocols · 2024 · PMID 38300798
  not yet assessed
• RBM33 is a unique m6A RNA-binding protein that regulates ALKBH5 demethylase activity and substrate selectivity ↗

  Molecular Cell · 2023 · PMID 37257451
  not yet assessed
• Association of somatic mutations and histologic subtype/grade on prognosis and PD-L1 expression in mesothelioma. ↗

  Journal of Clinical Oncology · 2023
  not yet assessed
• KAS-seq: genome-wide sequencing of single-stranded DNA by N3-kethoxal–assisted labeling ↗

  Nature Protocols · 2022 · PMID 35013616
  not yet assessed
• Ka Band Phased Array Development Platform ↗

  2022 IEEE International Symposium on Phased Array Systems & Technology (PAST) · 2022
  not yet assessed
• The METTL5-TRMT112 N6-methyladenosine methyltransferase complex regulates mRNA translation via 18S rRNA methylation ↗

  Journal of Biological Chemistry · 2022 · PMID 35033535
  not yet assessed
• METTL3 Regulates Liver Homeostasis, Hepatocyte Ploidy, and Circadian Rhythm–Controlled Gene Expression in Mice ↗

  American Journal Of Pathology · 2021 · PMID 34599880
  not yet assessed
• Lysine acetylation restricts mutant IDH2 activity to optimize transformation in AML cells ↗

  Molecular Cell · 2021 · PMID 34289383
  not yet assessed
• Paraventricular Calcitonin Receptor–Expressing Neurons Modulate Energy Homeostasis in Male Mice ↗

  Endocrinology · 2021 · PMID 33834205
  not yet assessed
• The METTL5-TRMT112 N 6 -methyladenosine methyltransferase complex regulates metabolism and development via translation ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• RNA Demethylase ALKBH5 Selectively Promotes Tumorigenesis and Cancer Stem Cell Self-Renewal in Acute Myeloid Leukemia ↗

  Cell stem cell · 2020 · PMID 32402250
  not yet assessed
• N6-Deoxyadenosine Methylation in Mammalian Mitochondrial DNA ↗

  Molecular Cell · 2020 · PMID 32183942
  not yet assessed
• Genetic analyses support the contribution of mRNA N6-methyladenosine (m6A) modification to human disease heritability ↗

  Nature Genetics · 2020 · PMID 32601472
  not yet assessed
• Stabilization of ERK-Phosphorylated METTL3 by USP5 Increases m6A Methylation ↗

  Molecular Cell · 2020 · PMID 33217317
  not yet assessed
• REPIC: a database for exploring the N6-methyladenosine methylome ↗

  Genome biology · 2020 · PMID 32345346
  not yet assessed
• Lactational metformin exposure programs offspring white adipose tissue glucose homeostasis and resilience to metabolic stress in a sex-dependent manner ↗

  American Journal of Physiology-Endocrinology and Metabolism · 2020 · PMID 32154743
  not yet assessed
• Global Detection of RNA Methylation by Click Degradation ↗

  ACS Central Science · 2020 · PMID 33376774
  not yet assessed
• OR04-03 Calcitonin Receptor Expressing Neurons in the PVH Regulate Feeding Behavior ↗

  Journal of the Endocrine Society · 2020
  not yet assessed
• Additional file 1 of REPIC: a database for exploring the N6-methyladenosine methylome ↗

  Figshare · 2020
  not yet assessed
• Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues ↗

  Nature Biotechnology · 2019 · PMID 31427819
  not yet assessed
• SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues ↗

  Nature Methods · 2019 · PMID 31110282
  not yet assessed
• The RNA-binding protein FMRP facilitates the nuclear export of N6-methyladenosine–containing mRNAs ↗

  Journal of Biological Chemistry · 2019 · PMID 31753916
  not yet assessed
• The wonders of BMP9: From mesenchymal stem cell differentiation, angiogenesis, neurogenesis, tumorigenesis, and metabolism to regenerative medicine ↗

  Genes & Diseases · 2019 · PMID 32042861
  not yet assessed
• RADAR: differential analysis of MeRIP-seq data with a random effect model⚑

  Genome biology · 2019 · PMID 31870409
  L1 10/100 ⚑
• Lactational High-Fat Diet Exposure Programs Metabolic Inflammation and Bone Marrow Adiposity in Male Offspring ↗

  Nutrients · 2019 · PMID 31234301
  not yet assessed
• A Feminism for Everyone? How the Developed Should Help the Developing

  Scholarly Commons (University of Pennsylvania) · 2019
  not yet assessed
• RADAR: Differential analysis of MeRIP-seq data with a random effect model ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• m6A mRNA methylation regulates AKT activity to promote the proliferation and tumorigenicity of endometrial cancer ↗

  Nature Cell Biology · 2018 · PMID 30154548
  not yet assessed
• Carbon trading, co-pollutants, and environmental equity: Evidence from California’s cap-and-trade program (2011–2015) ↗

  PLoS Medicine · 2018 · PMID 29990353
  not yet assessed
• Differentiating Usual Interstitial Pneumonia From Nonspecific Interstitial Pneumonia Using High-resolution Computed Tomography ↗

  Journal of Thoracic Imaging · 2018 · PMID 29683868
  not yet assessed
• Egr2 overexpression in Schwann cells increases myelination frequency in vitro ↗

  Heliyon · 2018 · PMID 30761371
  not yet assessed
• Demarcation of Viral Shelters Results in Destruction by Membranolytic GTPases: Antiviral Function of Autophagy Proteins and Interferon‐Inducible GTPases ↗

  BioEssays · 2018 · PMID 29603284
  not yet assessed
• SABER enables highly multiplexed and amplified detection of DNA and RNA in cells and tissues ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Highly multiplexed in situ protein imaging with signal amplification by Immuno-SABER ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components ↗

  Nature · 2017 · PMID 29219968
  not yet assessed
• Use of digital health kits to reduce readmission after cardiac surgery ↗

  Journal of Surgical Research · 2016 · PMID 27451860
  not yet assessed
• Dysphagia after Cardiac Operations is Associated with Increased Length of Stay and Costs ↗

  The American Surgeon · 2016 · PMID 27779967
  not yet assessed
• Childhood Obesity and Extracorporeal Membrane Oxygenation: Special Considerations for Successful Outcomes ↗

  Journal of Pediatric Intensive Care · 2016 · PMID 31073433
  not yet assessed
• Impact of an Institutional Antimicrobial Stewardship Program on Bacteriology of Surgical Site Infections in Cardiac Surgery ↗

  Journal of Cardiac Surgery · 2016 · PMID 27151622
  not yet assessed
• 115. Correction of the Sickle-Cell Disease Mutation in Human Hematopoietic Stem/Progenitor Cells ↗

  Molecular Therapy · 2015
  not yet assessed
• Correction of the sickle cell disease mutation in human hematopoietic stem/progenitor cells ↗

  Blood · 2015 · PMID 25733580
  not yet assessed
• CHARMM-GUI PDB Manipulator for Advanced Modeling and Simulations of Proteins Containing Nonstandard Residues ↗

  Advances in protein chemistry and structural biology · 2014 · PMID 25443960
  not yet assessed
• Knowledge Graph Visualization for Understanding Ideas ↗

  International Journal for Cross-Disciplinary Subjects in Education · 2013
  not yet assessed