Jesper Tegnér
Reproducibility track record
2
assessed papers
60/100
mean reproducibility
0
reproduced (C1–C2)
0
flagged
20
total citations
flag rate:
0%
(0/2)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 1
Topics
Funders
—
Frequent co-authors
David Gómez-Cabrero 2Amaia Vilas‐Zornoza 1Itziar Cenzano 1Luca Malcovati 1Miren Lasaga 1Ignacio Sancho 1Mo Li 1Juan P. Romero 1Jin Ye 1Gabriele Todisco 1
Institutions
King Abdullah University of Science and Technology 2Karolinska Institutet 2Navarrabiomed 2Karolinska University Hospital 1Science for Life Laboratory 1Navarre Institute of Health Research 1
Geography (author institutions)
SA 2SE 2ES 2IT 1GB 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (2)
Complete publication record (440)
Request a reproduction →2 assessed by us (0 reproduced) · 438 not yet assessed — every PubMed paper on record, linked below.
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Predicting and interpreting cell-type-specific drug responses in the small-data regime using inductive priors ↗Nature Machine Intelligence · 2026not yet assessed
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Human growth plates house resting zone sub-populations with features of quiescent stem cells ↗Bone Research · 2026 · PMID 42552306not yet assessed
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Single-cell and spatial transcriptomic profiling of cardiac fibroblasts following myocardial infarction ↗Scientific Data · 2026 · PMID 41526391not yet assessed
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Co-regulatory changes in Homo sapiens prefrontal cortex shape RNA-chromatin interactions ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Establishment of the Saudi Bank of Induced Pluripotent Stem Cells (SBiPSCs): A National Platform for iPSC-Based Research and Therapy ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Human neuronal differentiation under Aβ exposure: a single-cell transcriptomic and epigenomic dataset ↗Scientific Data · 2026 · PMID 41807428not yet assessed
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Single‐Cell Profiling Reveals RAB13 + Endothelial Cells and Profibrotic Mesenchymal Cells in Aged Human Bone Marrow ↗Aging Cell · 2026 · PMID 41954292not yet assessed
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Stromal and endothelial transcriptional changes during progression from MGUS to myeloma and after treatment response ↗Nature Communications · 2026 · PMID 42336819not yet assessed
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SPIDER-WEB enables a real-time data retrieval of DNA-based data storage ↗Research Square · 2026not yet assessed
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Unify learns cellular evolution with universal multimodal embeddings ↗Nature Communications · 2026 · PMID 42669747not yet assessed
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The human RNA-DNA interactome is cell type-specific and dynamic ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Exploring the role of large language models in the scientific method: from hypothesis to discovery ↗npj Artificial Intelligence · 2025not yet assessed
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NLRP3-mediated glutaminolysis controls microglial phagocytosis to promote Alzheimer’s disease progression ↗Immunity · 2025 · PMID 39904338not yet assessed
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Minimal algorithmic information loss methods for dimension reduction, feature selection and network sparsification ↗Information Sciences · 2025not yet assessed
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Multimodal foundation transformer models for multiscale genomics ↗Nature Methods · 2025 · PMID 41326819not yet assessed
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Characterization of the bone marrow architecture of multiple myeloma using spatial transcriptomics ↗Communications Biology · 2025 · PMID 41266582not yet assessed
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GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis ↗BMC Bioinformatics · 2025 · PMID 40841877not yet assessed
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Uncovering the regulatory landscape of early human B cell lymphopoiesis and its implications in the pathogenesis of B-ALL ↗Science Advances · 2025 · PMID 41071881not yet assessed
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Leveraging network motifs to improve artificial neural networks ↗Nature Communications · 2025 · PMID 41390340not yet assessed
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Charting the single cell transcriptional landscape governing visual imprinting ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Fundamental Limits of Inferring Dynamical Gene Regulatory Models from Single-Cell Data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Unify: Learning Cellular Evolution with Universal Multimodal Embeddings ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Advancing the Scientific Method with Large Language Models: From Hypothesis to Discovery ↗arXiv (Cornell University) · 2025not yet assessed
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Single-cell profiling reveals a novel RAB13+ endothelial subpopulation and profibrotic mesenchymal cells in the aged human bone marrow ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Data meets prior knowledge for interpretable mechanistic inference in biology ↗Nature Machine Intelligence · 2025not yet assessed
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Interpretable Causal Representation Learning for Biological Data in the Pathway Space ↗arXiv (Cornell University) · 2025not yet assessed
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Epigenetic Age Prediction Remains Stable Across Common Variants and Diverse Ancestries ↗medRxiv · 2025not yet assessed
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not yet assessed
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Epigenetic feedback reshapes dynamical landscapes in gene regulatory networks ↗arXiv (Cornell University) · 2025not yet assessed
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Epigenetic feedback reshapes dynamical landscapes in gene regulatory networksarXiv (Cornell University) · 2025not yet assessed
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Thermo-Dynamic Flux Balance Analysis, a novel approach to simulate circadian metabolism ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Benchmarking cross-species single-cell RNA-seq data integration methods: towards a cell type tree of life ↗Nucleic Acids Research · 2024 · PMID 39778870not yet assessed
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Latent space arithmetic on data embeddings from healthy multi-tissue human RNA-seq decodes disease modules ↗Patterns · 2024 · PMID 39568475not yet assessed
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Assembly Theory is an approximation to algorithmic complexity based on LZ compression that does not explain selection or evolution ↗PLOS complex systems. · 2024not yet assessed
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A comparative analysis of blastoid models through single-cell transcriptomicsiScience · 2024 · PMID 39524369L1 60/100
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Reviewability and supportability: New complementary principles to empower research software practices ↗Computational and Structural Biotechnology Journal · 2024 · PMID 39582890not yet assessed
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NLRP3 regulates immunometabolism, impacting microglial function in Alzheimer’s disease ↗Alzheimer s & Dementia · 2024not yet assessed
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A robust clustering strategy for stratification unveils unique patient subgroups in acutely decompensated cirrhosis ↗Journal of Translational Medicine · 2024 · PMID 38937846not yet assessed
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Bone Marrow Spatial Transcriptomics Reveals a Myeloma Cell Architecture with Dysfunctional T-Cell Distribution, Neutrophil Traps, and Inflammatory Signaling ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Stromal and Endothelial Transcriptional Changes during Progression from MGUS to Myeloma and after Treatment Response ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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SpatialDiffusion: Predicting Spatial Transcriptomics with Denoising Diffusion Probabilistic Models ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Leveraging Pre-Trained Neural Networks to Enhance Machine Learning with Variational Quantum Circuits ↗Research Square · 2024not yet assessed
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PrePR-CT: Predicting Perturbation Responses in Unseen Cell Types Using Cell-Type-Specific Graphs ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Assembly Theory Reduced to Shannon Entropy and Rendered Redundant by Naive Statistical Algorithms ↗arXiv (Cornell University) · 2024not yet assessed
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Assembly Theory is an approximation to algorithmic complexity based on LZ compression that does not explain selection or evolution ↗arXiv (Cornell University) · 2024not yet assessed
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GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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P-249 Spatial Transcriptomics Unveils Novel Disease Mechanisms Associated With the Microenvironment in Multiple Myeloma ↗Clinical Lymphoma Myeloma & Leukemia · 2024not yet assessed
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T- Hop: A framework for studying the importance path information in molecular graphs for chemical property prediction ↗arXiv (Cornell University) · 2024not yet assessed
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Leveraging Pre-Trained Neural Networks to Enhance Machine Learning with Variational Quantum Circuits ↗arXiv (Cornell University) · 2024not yet assessed
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Unravelling the molecular activation of the reparative cardiac fibroblasts after myocardial infarction ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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ClustAll: An R package for patient stratification in complex diseases ↗PLoS Computational Biology · 2024 · PMID 39671459not yet assessed
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Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers ↗Nature Machine Intelligence · 2023not yet assessed
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HLA-based banking of induced pluripotent stem cells in Saudi Arabia ↗Stem Cell Research & Therapy · 2023 · PMID 38111036not yet assessed
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DNA Methylation Signatures of Multiple Sclerosis Occur Independently of Known Genetic Risk and Are Primarily Attributed to B Cells and Monocytes ↗International Journal of Molecular Sciences · 2023 · PMID 37628757not yet assessed
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Algorithmic Information Dynamics ↗Cambridge University Press eBooks · 2023not yet assessed
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not yet assessed
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scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences ↗PLoS ONE · 2023 · PMID 36735690not yet assessed
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Approximations of algorithmic and structural complexity validate cognitive-behavioral experimental results ↗Frontiers in Computational Neuroscience · 2023 · PMID 36761393not yet assessed
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Generation of iPSC lines (KAIMRCi003A, KAIMRCi003B) from a Saudi patient with Dravet syndrome carrying homozygous mutation in the CPLX1 gene and heterozygous mutation in SCN9A ↗Human Cell · 2023 · PMID 38110787not yet assessed
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LIBRA: an adaptative integrative tool for paired single‐cell multi‐omics data ↗Quantitative Biology · 2023 · PMID 41675251not yet assessed
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Translating single-cell genomics into cell types ↗Nature Machine Intelligence · 2023not yet assessed
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Generation of myoglobin (MB)-knockout human embryonic stem cell (hESC) line (KAIMRCe002-A-1S) using CRISPR/Cas9 technology ↗Stem Cell Research · 2023 · PMID 37406498not yet assessed
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Foundation Models Meet Imbalanced Single-Cell Data When Learning Cell Type Annotations ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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The Future of Fundamental Science Led by Generative Closed-Loop Artificial Intelligence ↗arXiv (Cornell University) · 2023not yet assessed
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DNA methylation signatures of Multiple Sclerosis occur independently of genetic risk and are primarily attributed to B cells and monocytes ↗Research Square · 2023not yet assessed
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LEP-AD: Language Embedding of Proteins and Attention to Drugs predicts drug target interactions ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Representational Learning from Healthy Multi-Tissue Human RNA-seq Data such that Latent Space Arithmetics Extracts Disease Modules ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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not yet assessed
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HLA-Based Banking of Human Induced Pluripotent Stem Cells in Saudi Arabia ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Generation of iPSC lines (KAIMRCi003A, KAIMRCi003B) from a Saudi patient with Dravet Syndrome carrying homozygous mutation in the CPLX1 gene and heterozygous mutation in SCN9A ↗Research Square · 2023not yet assessed
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ClustALL: A robust clustering strategy for stratification of patients with acutely decompensated cirrhosis ↗medRxiv · 2023not yet assessed
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Spatial Transcriptomics Unveils Novel Potential Mechanisms of Disease in a MI cγ1 Multiple Myeloma in vivo Model ↗Blood · 2023not yet assessed
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not yet assessed
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IHCV: Discovery of Hidden Time-Dependent Control Variables in Non-Linear Dynamical Systems ↗arXiv (Cornell University) · 2023not yet assessed
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A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model ↗arXiv (Cornell University) · 2023not yet assessed
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Uncovering the regulatory landscape of early human B-cell lymphopoiesis and its implications in the pathogenesis of B-cell acute lymphoblastic leukemia ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition ↗arXiv (Cornell University) · 2023not yet assessed
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HLA-Based Banking of Induced Pluripotent Stem Cells in Saudi Arabia ↗Research Square · 2023not yet assessed
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Joint Learning of Node Semantics and Graph Topology using a Transformer in the sparse network regime ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Deep neural network prediction of genome-wide transcriptome signatures – beyond the Black-box ↗npj Systems Biology and Applications · 2022 · PMID 35197482not yet assessed
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Non-local Attention Improves Description Generation for Retinal Images ↗2022 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) · 2022not yet assessed
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Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservationiScience · 2022 · PMID 35494238L1 60/100
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RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases ↗Frontiers in Molecular Biosciences · 2022 · PMID 36106020not yet assessed
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NLRP3 regulates microglial metabolic function in Alzheimer’s disease ↗Alzheimer s & Dementia · 2022not yet assessed
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Data-driven bioinformatics to disentangle cells within a tissue microenvironment ↗Trends in Cell Biology · 2022 · PMID 35430125not yet assessed
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scAEGAN: Unification of Single-Cell Genomics Data by Adversarial Learning of Latent Space Correspondences ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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NLRP3-Mediated Glutaminolysis Regulates Microglia in Alzheimer's Disease ↗SSRN Electronic Journal · 2022not yet assessed
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Genetic architecture of behavioural resilience to ocean acidification ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Genetic architecture of behavioural resilience to ocean acidification ↗Zenodo (CERN European Organization for Nuclear Research) · 2022not yet assessed
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DeepViral: prediction of novel virus–host interactions from protein sequences and infectious disease phenotypes ↗Bioinformatics · 2021 · PMID 33682875not yet assessed
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DeepOpht: Medical Report Generation for Retinal Images via Deep Models and Visual Explanation ↗2021not yet assessed
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STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline ↗Frontiers in Genetics · 2021 · PMID 33747045not yet assessed
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A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts ↗GeroScience · 2021 · PMID 33599920not yet assessed
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Predicting anti-PD-1 responders in malignant melanoma from the frequency of S100A9+ monocytes in the blood ↗Journal for ImmunoTherapy of Cancer · 2021 · PMID 33963011not yet assessed
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Algorithmic Probability-Guided Machine Learning on Non-Differentiable Spaces ↗Frontiers in Artificial Intelligence · 2021 · PMID 33733213not yet assessed
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DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows ↗Genome Biology and Evolution · 2021 · PMID 34599322not yet assessed
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Deep Characterization of Paired Chromatin and Transcriptomes in Four Immune Cell Types from Multiple Sclerosis Patients ↗Epigenomics · 2021 · PMID 34676774not yet assessed
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Gene Regulatory Network of Human GM-CSF-Secreting T Helper Cells ↗Journal of Immunology Research · 2021 · PMID 34285924not yet assessed
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Estimations of Integrated Information Based on Algorithmic Complexity and Dynamic Querying ↗WORLD SCIENTIFIC eBooks · 2021not yet assessed
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Adaptative Machine Translation between paired Single-Cell Multi-Omics Data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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DNA transposon expansion is associated with genome size increase in mudminnows ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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White-box Deep Neural Network Prediction of Genome-Wide Transcriptome Signatures ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Deep deconvolution of the hematopoietic stem cell regulatory microenvironment reveals a high degree of specialization and conservation between mouse and human ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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RNA-Sequencing And Mass-Spectrometry Proteomic Time-Series Analysis of T-Cell Differentiation Identified Multiple Splice Variants Models That Predicted Validated Protein Biomarkers In Inflammatory Diseases ↗Research Square · 2021not yet assessed
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not yet assessed
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Deep Deconvolution of the Hematopoietic Stem Cell Regulatory Microenvironment Reveals a High Degree of Specialization and Conservation Between Mouse and Human ↗SSRN Electronic Journal · 2021not yet assessed
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DNA transposon expansion is associated with genome size increase in mudminnows ↗Zenodo (CERN European Organization for Nuclear Research) · 2021not yet assessed
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Harmonization of quality metrics and power calculation in multi-omic studies ↗Nature Communications · 2020 · PMID 32555183not yet assessed
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Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder ↗Nature Communications · 2020 · PMID 32051402not yet assessed
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Algorithmic Information Dynamics ↗Scholarpedia · 2020not yet assessed
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MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells ↗Nucleic Acids Research · 2020 · PMID 33051686not yet assessed
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COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight ↗F1000Research · 2020not yet assessed
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Immunometabolic Network Interactions of the Kynurenine Pathway in Cutaneous Malignant Melanoma ↗Frontiers in Oncology · 2020 · PMID 32117720not yet assessed
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NLRP3 inflammasome activation regulates microglial migration ↗Alzheimer s & Dementia · 2020not yet assessed
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DeepViral: infectious disease phenotypes improve prediction of novel virus–host interactions ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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Multitask learning for Transformers with application to large-scale single-cell transcriptomes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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VLG-Net: Video-Language Graph Matching Network for Video Grounding ↗arXiv (Cornell University) · 2020not yet assessed
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scMomentum: Inference of Cell-Type-Specific Regulatory Networks and Energy Landscapes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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DeepOpht: Medical Report Generation for Retinal Images via Deep Models and Visual Explanation ↗arXiv (Cornell University) · 2020not yet assessed
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COVID-19 and Beyond: A Call for Action and Audacious Solidarity to All the Citizens and Nations, It Is Humanity’s Fight ↗SSRN Electronic Journal · 2020not yet assessed
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Prediction of novel virus-host interactions by integrating clinical symptoms and protein sequences ↗King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2020not yet assessed
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Learning Heat Diffusion for Network Alignment ↗arXiv (Cornell University) · 2020not yet assessed
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Metadata record for: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗UvA-DARE (University of Amsterdam) · 2020not yet assessed
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STATegra: Multi-omics data integration - A conceptual scheme and a bioinformatics pipeline ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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Elucidating the Role of Virulence Traits in the Survival of Pathogenic E. coli PI-7 Following Disinfection ↗Frontiers in Bioengineering and Biotechnology · 2020 · PMID 33415102not yet assessed
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Whole-genome re-sequencing of pathogenic E. coli strain PI-7King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2020not yet assessed
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Jhhuangkay/DeepOpht-Medical-Report-Generation-for-Retinal-Images-via-Deep-Models-and-Visual-Explanation:King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2020not yet assessed
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Inferring causal molecular networks: empirical assessment through a community-based effort ↗Carolina Digital Repository (University of North Carolina at Chapel Hill) · 2020not yet assessed
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen ↗Nature Communications · 2019 · PMID 31209238not yet assessed
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Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps ↗PLoS Computational Biology · 2019 · PMID 31682608not yet assessed
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Exhaustion of CD4+ T-cells mediated by the Kynurenine Pathway in Melanoma ↗Scientific Reports · 2019 · PMID 31434983not yet assessed
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Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression ↗EBioMedicine · 2019 · PMID 31053557not yet assessed
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MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis ↗Proceedings of the National Academy of Sciences · 2019 · PMID 31004050not yet assessed
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Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗Clinical Epigenetics · 2019 · PMID 31146783not yet assessed
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Associations of Plasma 3-Methylhistidine with Frailty Status in French Cohorts of the FRAILOMIC Initiative ↗Journal of Clinical Medicine · 2019 · PMID 31295923not yet assessed
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Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients ↗Scientific Reports · 2019 · PMID 31427643not yet assessed
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Phosphatase inhibitor PPP1R11 modulates resistance of human T cells toward Treg-mediated suppression of cytokine expression ↗Journal of Leukocyte Biology · 2019 · PMID 30882958not yet assessed
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Synthesizing New Retinal Symptom Images by Multiple Generative Models ↗Lecture notes in computer science · 2019not yet assessed
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TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells ↗Frontiers in Immunology · 2019 · PMID 31849937not yet assessed
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Challenges in the Multivariate Analysis of Mass Cytometry Data: The Effect of Randomization ↗Cytometry Part A · 2019 · PMID 31692248not yet assessed
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Auto-classification of Retinal Diseases in the Limit of Sparse Data Using a Two-Streams Machine Learning Model ↗Lecture notes in computer science · 2019not yet assessed
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Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation ↗PLoS Biology · 2019 · PMID 30978178not yet assessed
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not yet assessed
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STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗Scientific Data · 2019 · PMID 31672995not yet assessed
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Interpretable Self-Attention Temporal Reasoning for Driving Behavior Understanding ↗arXiv (Cornell University) · 2019not yet assessed
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A validated strategy to infer protein biomarkers from RNA-Seq by combining multiple mRNA splice variants and time-delay ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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STATegra: a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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Algorithmic Probability-guided Supervised Machine Learning on Non-differentiable Spaces ↗arXiv (Cornell University) · 2019not yet assessed
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Gene regulatory network of human GM-CSF secreting T helper cells ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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Deriving Disease Modules from the Compressed Transcriptional Space Embedded in a Deep Auto-encoder ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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not yet assessed
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Synthesizing New Retinal Symptom Images by Multiple Generative Models ↗arXiv (Cornell University) · 2019not yet assessed
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mensxmachina/CyTOF-Randomization: Challenges in the multivariate analysis of mass cytometry data: the effect of randomization.King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2019not yet assessed
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Estimations of Integrated Information Based on Algorithmic Complexity and Dynamic Querying ↗arXiv (Cornell University) · 2019not yet assessed
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Metadata record for: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗Figshare · 2019not yet assessed
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Metadata record for: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗Figshare · 2019not yet assessed
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DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis ↗Nature Communications · 2018 · PMID 29921915not yet assessed
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A decomposition method for global evaluation of Shannon entropy and local estimations of algorithmic complexity ↗Deposito de Investigacion Universidad de Sevilla (University of Seville) · 2018not yet assessed
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A Review of Graph and Network Complexity from an Algorithmic Information Perspective ↗Entropy · 2018 · PMID 33265640not yet assessed
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Causal deconvolution by algorithmic generative models ↗Nature Machine Intelligence · 2018not yet assessed
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Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗BMC Biology · 2018 · PMID 29730990not yet assessed
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Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients ↗Human Molecular Genetics · 2018 · PMID 29325110not yet assessed
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Overexpression of endothelin B receptor in glioblastoma: a prognostic marker and therapeutic target? ↗BMC Cancer · 2018 · PMID 29409474not yet assessed
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Predictive Systems Toxicology ↗Methods in molecular biology · 2018 · PMID 29934910not yet assessed
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Symmetry and Correspondence of Algorithmic Complexity over Geometric, Spatial and Topological Representations ↗Entropy · 2018 · PMID 33265623not yet assessed
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Algorithmic Complexity and Reprogrammability of Chemical Structure Networks ↗Parallel Processing Letters · 2018not yet assessed
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A Novel Hybrid Machine Learning Model for Auto-Classification of Retinal Diseases ↗arXiv (Cornell University) · 2018not yet assessed
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The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
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Algorithmic Information Dynamics of Persistent Patterns and Colliding Particles in the Game of Life ↗arXiv (Cornell University) · 2018not yet assessed
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Symmetry and Algorithmic Complexity of Polyominoes and Polyhedral Graphs ↗arXiv (Cornell University) · 2018not yet assessed
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Learning Functions in Large Networks requires Modularity and produces Multi-Agent Dynamics ↗arXiv (Cornell University) · 2018not yet assessed
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Controllability, Multiplexing, and Transfer Learning in Networks using Evolutionary Learning ↗arXiv (Cornell University) · 2018not yet assessed
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Auto-Classification of Retinal Diseases in the Limit of Sparse Data Using a Two-Streams Machine Learning Model ↗arXiv (Cornell University) · 2018not yet assessed
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Auto-Classification of Retinal Diseases in the Limit of Sparse Data\n Using a Two-Streams Machine Learning Model ↗arXiv (Cornell University) · 2018not yet assessed
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Algorithmic Causal Deconvolution of Intertwined Programs and Networks by Generative Mechanism ↗arXiv (Cornell University) · 2018not yet assessed
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Parameter-free Network Sparsification and Data Reduction by Minimal Algorithmic Information Loss.King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018not yet assessed
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Ab initio Algorithmic Causal Deconvolution of Intertwined Programs and Networks by Generative MechanismKing Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018not yet assessed
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An Algorithmic Refinement of Maxent Induces a Thermodynamic-like Behaviour in the Reprogrammability of Generative Mechanisms.King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018not yet assessed
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Universal Data Reduction and Network Sparsification Method By Minimal Algorithmic Information LossarXiv (Cornell University) · 2018not yet assessed
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Data Dimension Reduction and Network Sparsification based on Minimal Algorithmic Information LossarXiv (Cornell University) · 2018not yet assessed
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An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems ↗iScience · 2018 · PMID 31541920not yet assessed
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Additional file 1: Figure S1. of Overexpression of endothelin B receptor in glioblastoma: a prognostic marker and therapeutic target? ↗Figshare · 2018not yet assessed
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Unsupervised and Universal Data Reduction and Network Sparsification Methods By Minimal Algorithmic Information LossarXiv (Cornell University) · 2018not yet assessed
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Algorithmic Complexity and Reprogrammability of Chemical Structure\n Networks ↗arXiv (Cornell University) · 2018not yet assessed
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Controllability, Multiplexing, and Transfer Learning in Networks using\n Evolutionary Learning ↗arXiv (Cornell University) · 2018not yet assessed
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Human regulatory T cells suppress CD4+ T cells by rapidly altering the phosphoproteome ↗The Journal of Immunology · 2018not yet assessed
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not yet assessed
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Additional file 5: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018not yet assessed
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Additional file 7: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018not yet assessed
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Additional file 4: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018not yet assessed
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not yet assessed
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Functional genomics analysis of vitamin D effects on CD4+ T cells in vivo in experimental autoimmune encephalomyelitis ↗Proceedings of the National Academy of Sciences · 2017 · PMID 28196884not yet assessed
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Low-algorithmic-complexity entropy-deceiving graphs ↗Physical review. E · 2017 · PMID 29347130not yet assessed
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Dynamics and heterogeneity of brain damage in multiple sclerosis ↗PLoS Computational Biology · 2017 · PMID 29073203not yet assessed
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Hypermethylation of MIR21 in CD4+ T cells from patients with relapsing-remitting multiple sclerosis associates with lower miRNA-21 levels and concomitant up-regulation of its target genes ↗Multiple Sclerosis Journal · 2017 · PMID 28766461not yet assessed
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Predicting Causal Relationships from Biological Data: Applying Automated Causal Discovery on Mass Cytometry Data of Human Immune Cells ↗Scientific Reports · 2017 · PMID 28983114not yet assessed
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HiDi: an efficient reverse engineering schema for large-scale dynamic regulatory network reconstruction using adaptive differentiation ↗Bioinformatics · 2017 · PMID 28961895not yet assessed
-
Causality, Information, and Biological Computation: An Algorithmic Software Approach to Life, Disease, and the Immune System ↗Cambridge University Press eBooks · 2017not yet assessed
-
Phosphoproteomics Reveals Regulatory T Cell-Mediated DEF6 Dephosphorylation That Affects Cytokine Expression in Human Conventional T Cells ↗Frontiers in Immunology · 2017 · PMID 28993769not yet assessed
-
The Information-Theoretic and Algorithmic Approach to Human, Animal, and Artificial Cognition ↗Studies in applied philosophy, epistemology and rational ethics · 2017not yet assessed
-
A minimal unified model of disease trajectories captures hallmarks of multiple sclerosis ↗Mathematical Biosciences · 2017 · PMID 28365299not yet assessed
-
Viva Europa, a Land of Excellence in Research and Innovation for Health and Wellbeing ↗Progress in Preventive Medicine · 2017not yet assessed
-
SCENERY: a web application for (causal) network reconstruction from cytometry data ↗Nucleic Acids Research · 2017 · PMID 28525568not yet assessed
-
Iterative Systems Biology for Medicine – Time for advancing from network signatures to mechanistic equations ↗Current Opinion in Systems Biology · 2017not yet assessed
-
Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology ↗Cell Systems · 2017 · PMID 28843483not yet assessed
-
Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology ↗Cell Systems · 2017not yet assessed
-
An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Predicting Causal Relationships from Biological Data: Applying Automated Casual Discovery on Mass Cytometry Data of Human Immune Cells ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
-
Comment on “Epigenetics in the pathogenesis of RA” ↗Seminars in Immunopathology · 2017 · PMID 28497351not yet assessed
-
HiDi: An efficient reverse engineering schema for large scale dynamic regulatory network reconstruction using adaptive differentiation ↗arXiv (Cornell University) · 2017not yet assessed
-
OMIC SIGNATURES IN FRAILTY AND FRAILTY DIAGNOSIS ↗Innovation in Aging · 2017not yet assessed
-
Editorial overview ↗Current Opinion in Systems Biology · 2017not yet assessed
-
An Algorithmic Information Calculus for Causal Discovery and\n Reprogramming Systems ↗arXiv (Cornell University) · 2017not yet assessed
-
Human macrophages induce CD4+Foxp3+ regulatory T cells via binding and re‐release of TGF‐β ↗Immunology and Cell Biology · 2016 · PMID 27075967not yet assessed
-
Comparative Analysis of Protocols to Induce Human CD4+Foxp3+ Regulatory T Cells by Combinations of IL-2, TGF-beta, Retinoic Acid, Rapamycin and Butyrate ↗PLoS ONE · 2016 · PMID 26886923not yet assessed
-
Proposals for enhanced health risk assessment and stratification in an integrated care scenario ↗BMJ Open · 2016 · PMID 27084274not yet assessed
-
From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗BMC Bioinformatics · 2016 · PMID 28185567not yet assessed
-
A perspective on bridging scales and design of models using low-dimensional manifolds and data-driven model inference ↗Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · 2016 · PMID 27698038not yet assessed
-
High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis ↗Genome Medicine · 2016 · PMID 27876072not yet assessed
-
In Vitro Differentiation of Human CD4+FOXP3+ Induced Regulatory T Cells (iTregs) from Naïve CD4+ T Cells Using a TGF-β-containing Protocol ↗Journal of Visualized Experiments · 2016 · PMID 28060341not yet assessed
-
Human cytomegalovirus may promote tumour progression by upregulating arginase-2 ↗Oncotarget · 2016 · PMID 27363017not yet assessed
-
Conditional Disease Development extracted from Longitudinal Health Care Cohort Data using Layered Network Construction ↗Scientific Reports · 2016 · PMID 27211115not yet assessed
-
TGF-β Affects the Differentiation of Human GM-CSF+ CD4+ T Cells in an Activation- and Sodium-Dependent Manner ↗Frontiers in Immunology · 2016 · PMID 28066414not yet assessed
-
Systems Toxicology: Systematic Approach to Predict Toxicity ↗Current Pharmaceutical Design · 2016 · PMID 27697024not yet assessed
-
Health risk assessment and stratification in an integrated care scenario ↗International Journal of Integrated Care · 2016not yet assessed
-
Methods of information theory and algorithmic complexity for network biology ↗Seminars in Cell and Developmental Biology · 2016 · PMID 26802516not yet assessed
-
Evaluating network inference methods in terms of their ability to preserve the topology and complexity of genetic networks ↗Seminars in Cell and Developmental Biology · 2016 · PMID 26851626not yet assessed
-
Characterization and reduction of variability in selection based on effect-size using association measures in cohort study of heterogeneous diseases ↗arXiv (Cornell University) · 2016not yet assessed
-
Adaptive input data transformation for improved network reconstruction with information theoretic algorithms ↗Statistical Applications in Genetics and Molecular Biology · 2016 · PMID 27875324not yet assessed
-
Corrigendum to “Methods of information theory and algorithmic complexity for network biology” [Semin. Cell Dev. Biol. 51 (2016) 32–43] ↗Seminars in Cell and Developmental Biology · 2016 · PMID 27979328not yet assessed
-
saezlab/combiMS: combiMS code for Prediction of combination therapy based on perturbation modeling of the multiple sclerosis signaling network. Code started by Marti at EBI on Feb 2013King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2016not yet assessed
-
In Vitro Differentiation of Human CD4+FOXP3+ Induced Regulatory T Cells (iTregs) from Naïve CD4+ T Cells Using a TGF-β-containing Protocol ↗Journal of Visualized Experiments · 2016not yet assessed
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Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR ↗Briefings in Bioinformatics · 2015 · PMID 26238539not yet assessed
-
VEGF-B promotes cancer metastasis through a VEGF-A–independent mechanism and serves as a marker of poor prognosis for cancer patients ↗Proceedings of the National Academy of Sciences · 2015 · PMID 25991856not yet assessed
-
IL-1β promotes Th17 differentiation by inducing alternative splicing of FOXP3 ↗Scientific Reports · 2015 · PMID 26441347not yet assessed
-
The folate-coupled enzyme MTHFD2 is a nuclear protein and promotes cell proliferation ↗Scientific Reports · 2015 · PMID 26461067not yet assessed
-
Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naïve-to-memory B-cell transition ↗Nature Communications · 2015 · PMID 26081581not yet assessed
-
In Search of ‘Omics'-Based Biomarkers to Predict Risk of Frailty and Its Consequences in Older Individuals: The FRAILOMIC Initiative ↗Gerontology · 2015 · PMID 26227153not yet assessed
-
Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders ↗International Journal of Molecular Sciences · 2015 · PMID 26690135not yet assessed
-
Probabilistic Computational Causal Discovery for Systems Biology ↗Studies in mechanobiology, tissue engineering and biomaterials · 2015not yet assessed
-
Optimization in Biology Parameter Estimation and the Associated Optimization Problem ↗Studies in mechanobiology, tissue engineering and biomaterials · 2015not yet assessed
-
Laboratory biomarkers and frailty: presentation of the FRAILOMIC initiative ↗Clinical Chemistry and Laboratory Medicine (CCLM) · 2015 · PMID 25993734not yet assessed
-
From Systems Understanding to Personalized Medicine: Lessons and Recommendations Based on a Multidisciplinary and Translational Analysis of COPD ↗Methods in molecular biology · 2015 · PMID 26677188not yet assessed
-
Modeling and Model Simplification to Facilitate Biological Insights and Predictions ↗Studies in mechanobiology, tissue engineering and biomaterials · 2015not yet assessed
-
Quantifying loss of information in network-based dimensionality reduction techniques ↗Journal of Complex Networks · 2015not yet assessed
-
Neuroswarm: A Methodology to Explore the Constraints that Function Imposes on Simulation Parameters in Large-Scale Networks of Biological Neurons ↗Studies in mechanobiology, tissue engineering and biomaterials · 2015not yet assessed
-
Computational Modeling Under Uncertainty: Challenges and Opportunities ↗Studies in mechanobiology, tissue engineering and biomaterials · 2015not yet assessed
-
Introduction to Data Types in Epigenomics ↗Translational bioinformatics · 2015not yet assessed
-
not yet assessed
-
Approximations of Algorithmic and Structural Complexity Validate Cognitive-behavioural Experimental Results ↗arXiv (Cornell University) · 2015not yet assessed
-
Evaluating Network Inference Methods in Preserving the Topology and Complexity of Reconstructed Genetic NetworksarXiv (Cornell University) · 2015not yet assessed
-
Causality, Information and Biological Computation: An algorithmic software approach to life, disease and the immune system ↗arXiv (Cornell University) · 2015not yet assessed
-
Numerical Investigation of Graph Spectra and Information Interpretability of Eigenvalues ↗Lecture notes in computer science · 2015not yet assessed
-
Causality, Programmability and Information Biology.arXiv (Cornell University) · 2015not yet assessed
-
not yet assessed
-
The Information-theoretic and Algorithmic Approach to Human, Animal and Artificial Cognition ↗arXiv (Cornell University) · 2015not yet assessed
-
Numerical Investigation of Graph Spectra and Information\n Interpretability of Eigenvalues ↗arXiv (Cornell University) · 2015not yet assessed
-
Quantifying Loss of Information in Network-based Dimensionality\n Reduction Techniques ↗arXiv (Cornell University) · 2015not yet assessed
-
Evaluating Network Inference Methods in Terms of Their Ability to\n Preserve the Topology and Complexity of Genetic Networks ↗arXiv (Cornell University) · 2015not yet assessed
-
Approximations of Algorithmic and Structural Complexity Validate\n Cognitive-behavioural Experimental Results ↗arXiv (Cornell University) · 2015not yet assessed
-
An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗Figshare · 2015not yet assessed
-
An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗Epigenetics · 2014 · PMID 25484259not yet assessed
-
Systems Medicine: from molecular features and models to the clinic in COPD ↗Journal of Translational Medicine · 2014 · PMID 25471042not yet assessed
-
Signaling networks in MS: A systems-based approach to developing new pharmacological therapies ↗Multiple Sclerosis Journal · 2014 · PMID 25112814not yet assessed
-
Non-HLA genes PTPN22, CDK6 and PADI4 are associated with specific autoantibodies in HLA-defined subgroups of rheumatoid arthritis ↗Arthritis Research & Therapy · 2014 · PMID 25138370not yet assessed
-
STATegra EMS: an Experiment Management System for complex next-generation omics experiments ↗BMC Systems Biology · 2014 · PMID 25033091not yet assessed
-
Synergy-COPD: a systems approach for understanding and managing chronic diseases ↗Journal of Translational Medicine · 2014 · PMID 25472826not yet assessed
-
Accelerating Translational Research by Clinically Driven Development of an Informatics Platform–A Case Study ↗PLoS ONE · 2014 · PMID 25203647not yet assessed
-
Oxygen Pathway Modeling Estimates High Reactive Oxygen Species Production above the Highest Permanent Human Habitation ↗PLoS ONE · 2014 · PMID 25375931not yet assessed
-
not yet assessed
-
Data integration in the era of omics: current and future challenges ↗BMC Systems Biology · 2014 · PMID 25032990not yet assessed
-
Chronic Obstructive Pulmonary Disease heterogeneity: challenges for health risk assessment, stratification and management ↗Journal of Translational Medicine · 2014 · PMID 25472887not yet assessed
-
Biomedical research in a Digital Health Framework ↗Journal of Translational Medicine · 2014 · PMID 25472554not yet assessed
-
Predictive medicine: outcomes, challenges and opportunities in the Synergy-COPD project ↗Journal of Translational Medicine · 2014 · PMID 25472742not yet assessed
-
STATegra EMS, an experiment management system for NGS data integration ↗F1000Research · 2014not yet assessed
-
Information Theory, Kolmogorov Complexity and Algorithmic Probability in Network BiologyarXiv (Cornell University) · 2014not yet assessed
-
On the Theory and Algorithm for rigorous discretization in applications of Information Theory ↗arXiv (Cornell University) · 2014not yet assessed
-
Methylome characterization of CD4+ T cells in multiple sclerosis — Establishing a role for miR-21 in autoimmune disease ↗Journal of Neuroimmunology · 2014not yet assessed
-
Impact of genetic risk loci in multiple sclerosis on expression of proximal genesMultiple Sclerosis Journal · 2014not yet assessed
-
Critical Unresolved Issues in the Applications of Information TheoryarXiv (Cornell University) · 2014not yet assessed
-
Methods of Information Theory and Algorithmic Complexity for Network\n Biology ↗arXiv (Cornell University) · 2014not yet assessed
-
An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗Figshare · 2014not yet assessed
-
An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗Figshare · 2014not yet assessed
-
An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform ↗Epigenetics · 2013 · PMID 23422812not yet assessed
-
Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression ↗Journal of Autoimmunity · 2013 · PMID 23306098not yet assessed
-
A vision and strategy for the virtual physiological human: 2012 update ↗Interface Focus · 2013 · PMID 24427536not yet assessed
-
Importance of mitochondrial P O 2 in maximal O2 transport and utilization: A theoretical analysis ↗Respiratory Physiology & Neurobiology · 2013 · PMID 24012990not yet assessed
-
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-
Implementation of the CDC translational informatics platform - from genetic variants to the national Swedish Rheumatology Quality Register ↗Journal of Translational Medicine · 2013 · PMID 23548156not yet assessed
-
Integrative approaches to computational biomedicine ↗Interface Focus · 2013not yet assessed
-
Pediatric systems medicine: evaluating needs and opportunities using congenital heart block as a case study ↗Pediatric Research · 2013 · PMID 23370412not yet assessed
-
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-
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-
Network Biology Empowering Detection and Understanding of Interactions Between Genetic Factors in Development of Complex Phenotypes ↗Elsevier eBooks · 2013not yet assessed
-
updateand strategy for the virtual physiological human: 20122013not yet assessed
-
Endurance training changes the DNA methylation pattern in human skeletal muscle ↗The FASEB Journal · 2013not yet assessed
-
List of Contributors ↗Elsevier eBooks · 2013not yet assessed
-
Molecular Phenotypes of Coronary Artery Disease : The Stockholm Atherosclerosis Gene Expression (STAGE) Study2013not yet assessed
-
Whole-genome expression profiling of human plaques to identify genes relevant for atherosclerosis : the Stockholm Atherosclerosis Gene Expression Study, Stockholm Söder Hospital, Sweden (SöS-STAGE)2013not yet assessed
-
Stronger fronto-parietal connectivity accounts for development of working memory-related brain activity2013not yet assessed
-
Identification of active gene networks by filtering co-occurence text mining networks with whole genome expression measurements2013not yet assessed
-
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data ↗Bioinformatics · 2012 · PMID 23175756not yet assessed
-
Identifying the Relevant Nodes Without Learning the Model ↗arXiv (Cornell University) · 2012not yet assessed
-
Systems medicine and integrated care to combat chronic noncommunicable diseases ↗Genome Medicine · 2011 · PMID 21745417not yet assessed
-
ParkDB: a Parkinson's disease gene expression database ↗Database · 2011 · PMID 21593080not yet assessed
-
Pre-B cell to macrophage transdifferentiation without significant promoter DNA methylation changes ↗Nucleic Acids Research · 2011 · PMID 22086955not yet assessed
-
Epigenetic alterations in autoimmune disease ↗Journal of Translational Medicine · 2011not yet assessed
-
Workflow for generating competing hypothesis from models with parameter uncertainty ↗Interface Focus · 2011 · PMID 22670212not yet assessed
-
Carotid Plaque Age Is a Feature of Plaque Stability Inversely Related to Levels of Plasma Insulin ↗PLoS ONE · 2011 · PMID 21490968not yet assessed
-
Decoding complex biological networks - tracing essential and modulatory parameters in complex and simplified models of the cell cycle ↗BMC Systems Biology · 2011 · PMID 21819620not yet assessed
-
not yet assessed
-
Non-HLA-DRB1 RA-associated risk alleles associate with anti-CCP and specific ACPA levels ↗Annals of the Rheumatic Diseases · 2011not yet assessed
-
Systems medicine and integrated care to combat chronic noncommunicable diseases ↗Dipòsit Digital de la Universitat de Barcelona (Universitat de Barcelona) · 2011not yet assessed
-
An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man ↗Cell · 2010 · PMID 20211142not yet assessed
-
A vision and strategy for the virtual physiological human in 2010 and beyond ↗Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · 2010 · PMID 20439264not yet assessed
-
not yet assessed
-
DGAT1 Participates in the Effect of HNF4A on Hepatic Secretion of Triglyceride-Rich Lipoproteins ↗Arteriosclerosis Thrombosis and Vascular Biology · 2010 · PMID 20167659not yet assessed
-
An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man (vol 140, pg 744, 2010)Cell · 2010not yet assessed
-
A Vision and Strategy for the VPH in 2010 and beyondUCL Discovery (University College London) · 2010not yet assessed
-
Mechanism for top-down control of working memory capacity ↗Proceedings of the National Academy of Sciences · 2009 · PMID 19339493not yet assessed
-
Multi-Organ Expression Profiling Uncovers a Gene Module in Coronary Artery Disease Involving Transendothelial Migration of Leukocytes and LIM Domain Binding 2: The Stockholm Atherosclerosis Gene Expression (STAGE) Study ↗PLoS Genetics · 2009 · PMID 19997623not yet assessed
-
Bridging the gap between systems biology and medicine ↗Genome Medicine · 2009 · PMID 19754960not yet assessed
-
On reliable discovery of molecular signatures ↗BMC Bioinformatics · 2009 · PMID 19178740not yet assessed
-
Reverse Engineering of Gene Networks with LASSO and Nonlinear Basis Functions ↗Annals of the New York Academy of Sciences · 2009 · PMID 19348648not yet assessed
-
Computational disease modeling – fact or fiction? ↗BMC Systems Biology · 2009 · PMID 19497118not yet assessed
-
An Algorithm for Reading Dependencies from the Minimal Undirected Independence Map of a Graphoid that Satisfies Weak Transitivity2009not yet assessed
-
Genome-wide system analysis reveals stable yet flexible network dynamics in yeast ↗IET Systems Biology · 2009 · PMID 19640161not yet assessed
-
Deconstructing the core dynamics from a complex time-lagged regulatory biological circuit ↗IET Systems Biology · 2009 · PMID 19292565not yet assessed
-
Can modular analysis identify disease-associated candidate genes for therapeutics? ↗Journal of Biology · 2009 · PMID 19519937not yet assessed
-
Translating systems biology into medical applications : Report of the 3rd Bertinoro Systems Biology WorkshopGenome biology · 2009not yet assessed
-
Carbon-14 Dating to Determine Carotid Plaque Age : Carbon-14 Dating of Carotid Plaques2009not yet assessed
-
On Stability of Limit Cycles of a Prototype Problem of Piecewise Linear Systems ↗Lecture notes in control and information sciences · 2009not yet assessed
-
Networks in Biology – From Identification, Analysis to Interpretation ↗Lecture notes in computer science · 2009not yet assessed
-
Transcription Regulatory Networks Analysis Using CAGE ↗Pan Stanford Publishing eBooks · 2009not yet assessed
-
Dual-Specificity Phosphatase-1—An Anti-Inflammatory Marker in Blood Independently Predicting Prolonged Postoperative Stay after Coronary Artery Bypass Grafting : DUSP1 – A Preoperative Blood Marker of Postoperative Stay2009not yet assessed
-
Transcriptional Profiling Uncovers a Network of Cholesterol-Responsive Atherosclerosis Target Genes ↗PLoS Genetics · 2008 · PMID 18369455not yet assessed
-
ApoB100-LDL Acts as a Metabolic Signal from Liver to Peripheral Fat Causing Inhibition of Lipolysis in Adipocytes ↗PLoS ONE · 2008 · PMID 19020660not yet assessed
-
Integrated approaches to uncovering transcription regulatory networks in mammalian cells ↗Genomics · 2008 · PMID 18191937not yet assessed
-
Electrotonic Signals along Intracellular Membranes May Interconnect Dendritic Spines and Nucleus ↗PLoS Computational Biology · 2008 · PMID 18369427not yet assessed
-
Soft Integration of Data for Reverse Engineering2008not yet assessed
-
Evidence of Highly Regulated Genes (in-Hubs) in Gene Networks of Saccharomyces Cerevisiae ↗Bioinformatics and Biology Insights · 2008 · PMID 19812784not yet assessed
-
Decoding complex biological networks : Sensitive parameter combinations identified by a reduced model2008not yet assessed
-
Consistent Feature Selection for Pattern Recognition in Polynomial Time2007not yet assessed
-
Stronger Synaptic Connectivity as a Mechanism behind Development of Working Memory-related Brain Activity during Childhood ↗Journal of Cognitive Neuroscience · 2007 · PMID 17488202not yet assessed
-
Human C-reactive protein slows atherosclerosis development in a mouse model with human-like hypercholesterolemia ↗Proceedings of the National Academy of Sciences · 2007 · PMID 17702862not yet assessed
-
FRONTO-PARIETAL CONNECTION ASYMMETRY REGULATES WORKING MEMORY DISTRACTIBILITY ↗Journal of Integrative Neuroscience · 2007 · PMID 18181269not yet assessed
-
Neuronal firing rates account for distractor effects on mnemonic accuracy in a visuo-spatial working memory task ↗Biological Cybernetics · 2007 · PMID 17260154not yet assessed
-
Detecting multivariate differentially expressed genes ↗BMC Bioinformatics · 2007 · PMID 17490475not yet assessed
-
Learning and Validating Bayesian Network Models of Gene Networks ↗Studies in fuzziness and soft computing · 2007not yet assessed
-
[Systems biology makes detailed understanding of complex diseases possible. Arteriosclerosis is an example]. ↗PubMed · 2007 · PMID 17985711not yet assessed
-
Towards scalable and data efficient learning of Markov boundaries ↗International Journal of Approximate Reasoning · 2006not yet assessed
-
Brain Activity Related to Working Memory and Distraction in Children and Adults ↗Cerebral Cortex · 2006 · PMID 16801377not yet assessed
-
Transcriptional network dynamics in macrophage activation ↗Genomics · 2006 · PMID 16698233not yet assessed
-
Perturbations to uncover gene networks ↗Trends in Genetics · 2006 · PMID 17098324not yet assessed
-
A biophysical model of multiple-item working memory: A computational and neuroimaging study ↗Neuroscience · 2006 · PMID 16777342not yet assessed
-
Systems biology of innate immunity ↗Cellular Immunology · 2006 · PMID 17433274not yet assessed
-
Evaluating Feature Selection for SVMs in High Dimensions ↗Lecture notes in computer science · 2006not yet assessed
-
Detection of compound mode of action by computational integration of whole-genome measurements and genetic perturbations ↗BMC Bioinformatics · 2006 · PMID 16451737not yet assessed
-
Thematic review series: Systems Biology Approaches to Metabolic and Cardiovascular Disorders. Multi-organ whole-genome measurements and reverse engineering to uncover gene networks underlying complex traits ↗Journal of Lipid Research · 2006 · PMID 17142807not yet assessed
-
A Flexible Implementation for Support Vector MachinesThe Mathematica Journal · 2006not yet assessed
-
Identifying the relevant nodes without learning the modelUncertainty in Artificial Intelligence · 2006not yet assessed
-
Reading Dependencies from the Minimal Undirected Independence Map of a Graphoid that Satisfies Weak TransitivityProbabilistic Graphical Models · 2006not yet assessed
-
Tu-P7:72 Atherosclerosis before and after transformation of fatty streaks into plaques — implications for disease expansion and gene expression ↗Atherosclerosis Supplements · 2006not yet assessed
-
We-P11:50 The stockholm atherosclerosis gene expression (stage) study - multiorgan expression profiling in well-characterized coronary artery disease patients ↗Atherosclerosis Supplements · 2006not yet assessed
-
Interaction of human bahaviour models2006not yet assessed
-
Interaction of human bahaviour models (06-BRIMS-21)2006not yet assessed
-
The Transcriptional Landscape of the Mammalian Genome ↗Science · 2005 · PMID 16141072not yet assessed
-
Growing Bayesian network models of gene networks from seed genes ↗Bioinformatics · 2005 · PMID 16204109not yet assessed
-
Learning dynamic Bayesian network models via cross-validation ↗Pattern Recognition Letters · 2005not yet assessed
-
Scalable, Efficient and Correct Learning of Markov Boundaries Under the Faithfulness Assumption ↗Lecture notes in computer science · 2005not yet assessed
-
Division of labor among distinct subtypes of inhibitory neurons in a cortical microcircuit of working memory ↗Proceedings of the National Academy of Sciences · 2004 · PMID 14742867not yet assessed
-
Modeling complex cellular networks - robust switching in the cell cycle ensures a piecewise linear reduction of the regulatory network ↗2004 43rd IEEE Conference on Decision and Control (CDC) (IEEE Cat. No.04CH37601) · 2004not yet assessed
-
Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling ↗Proceedings of the National Academy of Sciences · 2003 · PMID 12730377not yet assessed
-
Temporally Irregular Mnemonic Persistent Activity in Prefrontal Neurons of Monkeys During a Delayed Response Task ↗Journal of Neurophysiology · 2003 · PMID 12773500not yet assessed
-
A working memory model based on fast Hebbian learning ↗Network Computation in Neural Systems · 2003 · PMID 14653503not yet assessed
-
A working memory model based on fast Hebbian learning ↗Network Computation in Neural Systems · 2003not yet assessed
-
Systems Biology Is Taking Off ↗Genome Research · 2003 · PMID 14597651not yet assessed
-
The Logic of Life ↗Genome Research · 2003not yet assessed
-
Reverse engineering gene networks using singular value decomposition and robust regression ↗Proceedings of the National Academy of Sciences · 2002 · PMID 11983907not yet assessed
-
The dynamical stability of reverberatory neural circuits ↗Biological Cybernetics · 2002 · PMID 12461636not yet assessed
-
Spike-timing-dependent plasticity: common themes and divergent vistas ↗Biological Cybernetics · 2002 · PMID 12461634not yet assessed
-
Why Neuronal Dynamics should Control Synaptic Learning Rules ↗The MIT Press eBooks · 2002not yet assessed
-
An adaptive spike-timing-dependent plasticity rule ↗Neurocomputing · 2002not yet assessed
-
GABAB-ergic modulation of burst rate and intersegmental coordination in lamprey: experiments and simulations ↗Brain Research · 2000 · PMID 10793189not yet assessed
-
Interactive Effects of the GABABergic Modulation of Calcium Channels and Calcium-Dependent Potassium Channels in Lamprey ↗Journal of Neurophysiology · 1999 · PMID 10085358not yet assessed
-
Control of burst proportion and frequency range by drive-dependent modulation of adaptation ↗Neurocomputing · 1999not yet assessed
-
The synaptic NMDA component desynchronizes neural bursters ↗Neurocomputing · 1999not yet assessed
-
Intrinsic function of a neuronal network — a vertebrate central pattern generator ↗Brain Research Reviews · 1998 · PMID 9651523not yet assessed
-
Modulation of Burst Frequency by Calcium-Dependent Potassium Channels in the Lamprey Locomotor System: Dependence of the Activity Level ↗Journal of Computational Neuroscience · 1998 · PMID 9617663not yet assessed
-
Activity-dependent modulation of adaptation produces a constant burst proportion in a model of the lamprey spinal locomotor generator ↗Biological Cybernetics · 1998 · PMID 9742673not yet assessed
-
Activity Dependent Modulation of the Burst Rate by Calcium-Dependent Potassium Channels in Lamprey ↗1998not yet assessed
-
not yet assessed
-
Low-Voltage-Activated Calcium Channels in the Lamprey Locomotor Network: Simulation and Experiment ↗Journal of Neurophysiology · 1997 · PMID 9114237not yet assessed
-
Locomotor‐Related Presynaptic Modulation of Primary Afferents in the Lamprey ↗European Journal of Neuroscience · 1997 · PMID 9153576not yet assessed
-
Modulation of cellular mechanisms in a spinal locomotor networkFigshare · 1997not yet assessed
-
not yet assessed
-
Computer simulations of low voltage activated calcium channels in the lamprey spinal network1996not yet assessed
-
Calcium-dependent potassium channels play a critical role for burst termination in the locomotor network in lamprey ↗Journal of Neurophysiology · 1994 · PMID 7823105not yet assessed
-
Effects of metabotropic glutamate receptor activation on the cellular and network level in the lamprey spinal cord ↗Neuroreport · 1994 · PMID 7827325not yet assessed
-
The spinal GABA system modulates burst frequency and intersegmental coordination in the lamprey: differential effects of GABAA and GABAB receptors ↗Journal of Neurophysiology · 1993 · PMID 8385187not yet assessed
-
GABAB receptor activation causes a depression of low- and high-voltage-activated Ca2+ currents, postinhibitory rebound, and postspike afterhyperpolarization in lamprey neurons ↗Journal of Neurophysiology · 1993 · PMID 8120601not yet assessed
-
The neurophysiological bases of undulatory locomotion in vertebrates ↗Seminars in Neuroscience · 1993not yet assessed
-
GABAB-ergic modulation of the spinal locomotor network in Lamprey: Suppression of voltage-dependent calcium channels in neuronal cell bodies ↗Neuroscience Research Supplements · 1992not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Tegnér J” paper on PubMed ↗