David Gómez-Cabrero

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (2)

• A comparative analysis of blastoid models through single-cell transcriptomics.
  2024 L1 60/100
• Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
  2022 L1 60/100

2 assessed by us (0 reproduced) · 347 not yet assessed — every PubMed paper on record, linked below.

• Human growth plates house resting zone sub-populations with features of quiescent stem cells ↗

  Bone Research · 2026 · PMID 42552306
  not yet assessed
• Decoding extremophiles: insights from bioinformatics, machine learning, and data-driven approaches ↗

  Briefings in Bioinformatics · 2026 · PMID 42153318
  not yet assessed
• Corrigendum to “Maladaptive emergency granulopoiesis predicts poor outcomes in patients hospitalized with decompensated cirrhosis” [J Hepatol (2026) 749–765] ↗

  Journal of Hepatology · 2026 · PMID 42025568
  not yet assessed
• Blood multiomics reveal a dysregulated lipid mediator-mitochondrial network associated with the outcome of advanced cirrhosis ↗

  Nature Communications · 2026 · PMID 42173920
  not yet assessed
• Stromal and endothelial transcriptional changes during progression from MGUS to myeloma and after treatment response ↗

  Nature Communications · 2026 · PMID 42336819
  not yet assessed
• Unify learns cellular evolution with universal multimodal embeddings ↗

  Nature Communications · 2026 · PMID 42669747
  not yet assessed
• The human RNA-DNA interactome is cell type-specific and dynamic ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026
  not yet assessed
• NLRP3-mediated glutaminolysis controls microglial phagocytosis to promote Alzheimer’s disease progression ↗

  Immunity · 2025 · PMID 39904338
  not yet assessed
• Multimodal foundation transformer models for multiscale genomics ↗

  Nature Methods · 2025 · PMID 41326819
  not yet assessed
• Characterization of the bone marrow architecture of multiple myeloma using spatial transcriptomics ↗

  Communications Biology · 2025 · PMID 41266582
  not yet assessed
• Maladaptive emergency granulopoiesis predicts poor outcomes in patients hospitalized with decompensated cirrhosis ↗

  Journal of Hepatology · 2025 · PMID 41314350
  not yet assessed
• An optimized peritonitis-induced ACLF model that reproduces the full spectrum of extrahepatic organ failures in mice ↗

  Hepatology Communications · 2025 · PMID 40536682
  not yet assessed
• GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis ↗

  BMC Bioinformatics · 2025 · PMID 40841877
  not yet assessed
• Building simplified cancer subtyping and prediction models with glycan gene signatures ↗

  Cell Reports Methods · 2025 · PMID 40795869
  not yet assessed
• Uncovering the regulatory landscape of early human B cell lymphopoiesis and its implications in the pathogenesis of B-ALL ↗

  Science Advances · 2025 · PMID 41071881
  not yet assessed
• Single-cell profiling reveals monocyte mitochondrial dysfunction in patients with cirrhosis progressing to acute-on-chronic liver failure ↗

  medRxiv · 2025
  not yet assessed
• Charting the single cell transcriptional landscape governing visual imprinting ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Fundamental Limits of Inferring Dynamical Gene Regulatory Models from Single-Cell Data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Unify: Learning Cellular Evolution with Universal Multimodal Embeddings ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Single-cell profiling reveals a novel RAB13+ endothelial subpopulation and profibrotic mesenchymal cells in the aged human bone marrow ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• OS-077 Single-cell RNA sequencing of peripheral blood mononuclear cells in patients with acutely decompensated cirrhosis reveals a specific monocyte subset associated with an increased risk of progression to ACLF ↗

  Journal of Hepatology · 2025
  not yet assessed
• OS-076-YI Patients with acute decompensation of cirrhosis present a unique methylation signature associated with their outcome ↗

  Journal of Hepatology · 2025
  not yet assessed
• Enhancing Statistical Power and Data Reliability in Lipidomics: A New Framework for Extraction Method Selection Using Coral as a Model System ↗

  SSRN Electronic Journal · 2025
  not yet assessed
• Data meets prior knowledge for interpretable mechanistic inference in biology ↗

  Nature Machine Intelligence · 2025
  not yet assessed
• plasmoRUtils: A one-stop R Package for Plasmodium and other Apicomplexan parasite-related Bioinformatics analysis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Enhancing statistical power and data reliability in Lipidomics: A new framework for extraction method selection using coral as a model system ↗

  Microchemical Journal · 2025
  not yet assessed
• Interpretable Causal Representation Learning for Biological Data in the Pathway Space ↗

  arXiv (Cornell University) · 2025
  not yet assessed
• Epigenetic Age Prediction Remains Stable Across Common Variants and Diverse Ancestries ↗

  medRxiv · 2025
  not yet assessed
• Single-cell multiomic dissection of human hematopoietic stem cells reveals novel transcriptional fingerprints and regulatory programs in bone marrow and mobilized peripheral blood ↗

  Blood · 2025
  not yet assessed
• An atlas of cells in the human tonsil ↗

  Immunity · 2024 · PMID 38301653
  not yet assessed
• Benchmarking cross-species single-cell RNA-seq data integration methods: towards a cell type tree of life ↗

  Nucleic Acids Research · 2024 · PMID 39778870
  not yet assessed
• A comparative analysis of blastoid models through single-cell transcriptomics

  iScience · 2024 · PMID 39524369
  L1 60/100
• Reviewability and supportability: New complementary principles to empower research software practices ↗

  Computational and Structural Biotechnology Journal · 2024 · PMID 39582890
  not yet assessed
• A robust clustering strategy for stratification unveils unique patient subgroups in acutely decompensated cirrhosis ↗

  Journal of Translational Medicine · 2024 · PMID 38937846
  not yet assessed
• Competition shapes the landscape of X-chromosome-linked genetic diversity ↗

  Nature Genetics · 2024 · PMID 39060501
  not yet assessed
• Characterization of the Common Genetic Variation in the Spanish Population of Navarre ↗

  Genes · 2024 · PMID 38790214
  not yet assessed
• Global compositional and functional states of the human gut microbiome in health and disease ↗

  Genome Research · 2024 · PMID 39038849
  not yet assessed
• Bone Marrow Spatial Transcriptomics Reveals a Myeloma Cell Architecture with Dysfunctional T-Cell Distribution, Neutrophil Traps, and Inflammatory Signaling ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Stromal and Endothelial Transcriptional Changes during Progression from MGUS to Myeloma and after Treatment Response ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• SpatialDiffusion: Predicting Spatial Transcriptomics with Denoising Diffusion Probabilistic Models ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• PrePR-CT: Predicting Perturbation Responses in Unseen Cell Types Using Cell-Type-Specific Graphs ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Characterization of the common genetic variation in the Spanish population of Navarre ↗

  medRxiv · 2024
  not yet assessed
• GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Data from Software for the Integration of Multiomics Experiments in Bioconductor ↗

  2024
  not yet assessed
• WED-112 Plasma extracellular vesicles improve prediction of 90 day mortality in patients with acute decompensation of cirrhosis ↗

  Journal of Hepatology · 2024
  not yet assessed
• TOP-073 Extensive characterization of new biomarkers associated with infection and outcome of decompensation of cirrhosis using high throughput metabolomics, lipidomics and cytokinomics ↗

  Journal of Hepatology · 2024
  not yet assessed
• Supplementary Video S1 from Software for the Integration of Multiomics Experiments in Bioconductor ↗

  2024
  not yet assessed
• Supplementary Video S1 from Software for the Integration of Multiomics Experiments in Bioconductor ↗

  2024
  not yet assessed
• P-249 Spatial Transcriptomics Unveils Novel Disease Mechanisms Associated With the Microenvironment in Multiple Myeloma ↗

  Clinical Lymphoma Myeloma & Leukemia · 2024
  not yet assessed
• Mapping Disease Transitions from Premalignant, Asymptomatic to Advanced Myeloma through Integrative Epigenomic and Transcriptional Analyses ↗

  Blood · 2024
  not yet assessed
• ClustAll: An R package for patient stratification in complex diseases ↗

  PLoS Computational Biology · 2024 · PMID 39671459
  not yet assessed
• A second update on mapping the human genetic architecture of COVID-19 ↗

  Nature · 2023 · PMID 37674002
  not yet assessed
• Preclinical models for prediction of immunotherapy outcomes and immune evasion mechanisms in genetically heterogeneous multiple myeloma ↗

  Nature Medicine · 2023 · PMID 36928817
  not yet assessed
• Uncovering perturbations in human hematopoiesis associated with healthy aging and myeloid malignancies at single-cell resolution ↗

  eLife · 2023 · PMID 36629404
  not yet assessed
• Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition ↗

  2023
  not yet assessed
• Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers ↗

  Nature Machine Intelligence · 2023
  not yet assessed
• HLA-based banking of induced pluripotent stem cells in Saudi Arabia ↗

  Stem Cell Research & Therapy · 2023 · PMID 38111036
  not yet assessed
• Gene therapy restores the transcriptional program of hematopoietic stem cells in Fanconi anemia ↗

  Haematologica · 2023 · PMID 37021532
  not yet assessed
• Serum methylation of GALNT9, UPF3A, WARS, and LDB2 as noninvasive biomarkers for the early detection of colorectal cancer and advanced adenomas ↗

  Clinical Epigenetics · 2023 · PMID 37794510
  not yet assessed
• A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model ↗

  2023
  not yet assessed
• scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences ↗

  PLoS ONE · 2023 · PMID 36735690
  not yet assessed
• LIBRA: an adaptative integrative tool for paired single‐cell multi‐omics data ↗

  Quantitative Biology · 2023 · PMID 41675251
  not yet assessed
• Foundation Models Meet Imbalanced Single-Cell Data When Learning Cell Type Annotations ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Microbiome-based risk prediction in incident heart failure: a community challenge ↗

  medRxiv · 2023 · PMID 37873403
  not yet assessed
• LEP-AD: Language Embedding of Proteins and Attention to Drugs predicts drug target interactions ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Comprehensive Characterization of the Bone Marrow Microenvironment Transcriptional Remodeling in the Progression from MGUS to Smoldering and Multiple Myeloma ↗

  Blood · 2023
  not yet assessed
• HLA-Based Banking of Human Induced Pluripotent Stem Cells in Saudi Arabia ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• ClustALL: A robust clustering strategy for stratification of patients with acutely decompensated cirrhosis ↗

  medRxiv · 2023
  not yet assessed
• Spatial Transcriptomics Unveils Novel Potential Mechanisms of Disease in a MI cγ1 Multiple Myeloma in vivo Model ↗

  Blood · 2023
  not yet assessed
• Combined Single-Cell and Spatial Transcriptomics Unveil the Complex Organization of the Non-Immune Human Bone Marrow Microenvironment during Aging ↗

  Blood · 2023
  not yet assessed
• Uncovering the Cis-Regulatory Program of Early Human B-Cell Commitment and Its Implications in the Pathogenesis of B-Cell Acute Lymphoblastic Leukemia ↗

  Blood · 2023
  not yet assessed
• Palidis: fast discovery of novel insertion sequences ↗

  Microbial Genomics · 2023 · PMID 36897935
  not yet assessed
• Data from Software for the Integration of Multiomics Experiments in Bioconductor ↗

  2023
  not yet assessed
• Supplemental materials from Software for the Integration of Multiomics Experiments in Bioconductor ↗

  2023
  not yet assessed
• Supplemental materials from Software for the Integration of Multiomics Experiments in Bioconductor ↗

  2023
  not yet assessed
• IHCV: Discovery of Hidden Time-Dependent Control Variables in Non-Linear Dynamical Systems ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• Uncovering the regulatory landscape of early human B-cell lymphopoiesis and its implications in the pathogenesis of B-cell acute lymphoblastic leukemia ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Robust identification of patient subgroups in acute decompensated cirrhosis ↗

  Journal of Hepatology · 2023
  not yet assessed
• A systems medicine approach for the identification of potential prognostic biomarkers in patients with acute decompensation of cirrhosis ↗

  Journal of Hepatology · 2023
  not yet assessed
• Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• HLA-Based Banking of Induced Pluripotent Stem Cells in Saudi Arabia ↗

  Research Square · 2023
  not yet assessed
• Light Chain Amyloidosis Plasma Cells Show Specific Chromatin Accessibility and Transcriptome ↗

  Blood · 2023
  not yet assessed
• Joint Learning of Node Semantics and Graph Topology using a Transformer in the sparse network regime ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Alterations in the Oral Microbiome Associated With Diabetes, Overweight, and Dietary Components ↗

  Frontiers in Nutrition · 2022 · PMID 35873415
  not yet assessed
• Epigenetic clock indicates accelerated aging in glial cells of progressive multiple sclerosis patients ↗

  Frontiers in Aging Neuroscience · 2022 · PMID 36092807
  not yet assessed
• The Regulators of Peroxisomal Acyl-Carnitine Shuttle CROT and CRAT Promote Metastasis in Melanoma ↗

  Journal of Investigative Dermatology · 2022 · PMID 36058299
  not yet assessed
• DNA methylation changes in glial cells of the normal-appearing white matter in Multiple Sclerosis patients ↗

  Epigenetics · 2022 · PMID 35094644
  not yet assessed
• Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation

  iScience · 2022 · PMID 35494238
  L1 60/100
• RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases ↗

  Frontiers in Molecular Biosciences · 2022 · PMID 36106020
  not yet assessed
• Data-driven bioinformatics to disentangle cells within a tissue microenvironment ↗

  Trends in Cell Biology · 2022 · PMID 35430125
  not yet assessed
• An Atlas of Cells in the Human Tonsil ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• scAEGAN: Unification of Single-Cell Genomics Data by Adversarial Learning of Latent Space Correspondences ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• NLRP3-Mediated Glutaminolysis Regulates Microglia in Alzheimer's Disease ↗

  SSRN Electronic Journal · 2022
  not yet assessed
• Editorial: Microbiome and Machine Learning ↗

  Frontiers in Microbiology · 2022 · PMID 35865916
  not yet assessed
• Origin of congenital coronary arterio-ventricular fistulae from anomalous epicardial and myocardial development ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Author response: Uncovering perturbations in human hematopoiesis associated with healthy aging and myeloid malignancies at single-cell resolution ↗

  2022
  not yet assessed
• Palidis: fast discovery of novel insertion sequences ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• DNA methylation changes in glial cells of the normal-appearing white matter in Multiple Sclerosis patients ↗

  Figshare · 2022
  not yet assessed
• Mapping the human genetic architecture of COVID-19 ↗

  Nature · 2021 · PMID 34237774
  not yet assessed
• Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions ↗

  Frontiers in Microbiology · 2021 · PMID 33692771
  not yet assessed
• STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline ↗

  Frontiers in Genetics · 2021 · PMID 33747045
  not yet assessed
• A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts ↗

  GeroScience · 2021 · PMID 33599920
  not yet assessed
• Predicting anti-PD-1 responders in malignant melanoma from the frequency of S100A9+ monocytes in the blood ↗

  Journal for ImmunoTherapy of Cancer · 2021 · PMID 33963011
  not yet assessed
• Understanding the Adult Mammalian Heart at Single-Cell RNA-Seq Resolution ↗

  Frontiers in Cell and Developmental Biology · 2021 · PMID 34055776
  not yet assessed
• Higher sRAGE Levels Predict Mortality in Frail Older Adults with Cardiovascular Disease ↗

  Gerontology · 2021 · PMID 33477147
  not yet assessed
• The salivary proteome reflects some traits of dietary habits in diabetic and non-diabetic older adults ↗

  European Journal of Nutrition · 2021 · PMID 34041584
  not yet assessed
• Deep Characterization of Paired Chromatin and Transcriptomes in Four Immune Cell Types from Multiple Sclerosis Patients ↗

  Epigenomics · 2021 · PMID 34676774
  not yet assessed
• Unsupervised Cell Segmentation and Labelling in Neural Tissue Images ↗

  Applied Sciences · 2021
  not yet assessed
• Gene Regulatory Network of Human GM-CSF-Secreting T Helper Cells ↗

  Journal of Immunology Research · 2021 · PMID 34285924
  not yet assessed
• Global and temporal state of the human gut microbiome in health and disease ↗

  Research Square · 2021
  not yet assessed
• DNA methylation changes in glial cells of the normal-appearing white matter in Multiple Sclerosis patients ↗

  medRxiv · 2021
  not yet assessed
• Adaptative Machine Translation between paired Single-Cell Multi-Omics Data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Uncovering perturbations in human hematopoiesis associated with healthy aging and myeloid malignancies at single cell resolution ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Gene Therapy Restores the Transcriptional Program of Hematopoietic Stem Cells in Fanconi Anemia ↗

  medRxiv · 2021
  not yet assessed
• Serum methylation of GALNT9 , UPF3A , WARS, and LDB2 as non-invasive biomarkers for the early detection of colorectal cancer and premalignant adenomas ↗

  medRxiv · 2021
  not yet assessed
• Deep deconvolution of the hematopoietic stem cell regulatory microenvironment reveals a high degree of specialization and conservation between mouse and human ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Identification of loci genetically associated with antibodies to specific sets of citrullinated peptides in rheumatoid arthritis patients ↗

  medRxiv · 2021
  not yet assessed
• RNA-Sequencing And Mass-Spectrometry Proteomic Time-Series Analysis of T-Cell Differentiation Identified Multiple Splice Variants Models That Predicted Validated Protein Biomarkers In Inflammatory Diseases ↗

  Research Square · 2021
  not yet assessed
• Deep Deconvolution of the Hematopoietic Stem Cell Regulatory Microenvironment Reveals a High Degree of Specialization and Conservation between Mouse and Human ↗

  Blood · 2021
  not yet assessed
• Deep Deconvolution of the Hematopoietic Stem Cell Regulatory Microenvironment Reveals a High Degree of Specialization and Conservation Between Mouse and Human ↗

  SSRN Electronic Journal · 2021
  not yet assessed
• Preface ↗

  2021
  not yet assessed
• Single-Cell RNA Sequencing Analysis Reveals a Crucial Role for CTHRC1 (Collagen Triple Helix Repeat Containing 1) Cardiac Fibroblasts After Myocardial Infarction ↗

  Circulation · 2020 · PMID 32972203
  not yet assessed
• Abundance and diversity of resistomes differ between healthy human oral cavities and gut ↗

  Nature Communications · 2020 · PMID 32019923
  not yet assessed
• Harmonization of quality metrics and power calculation in multi-omic studies ↗

  Nature Communications · 2020 · PMID 32555183
  not yet assessed
• Targeted lipidomics reveals extensive changes in circulating lipid mediators in patients with acutely decompensated cirrhosis ↗

  Journal of Hepatology · 2020 · PMID 32294533
  not yet assessed
• Functional and transcriptomic analysis of extracellular vesicles identifies calprotectin as a new prognostic marker in peripheral arterial disease (PAD) ↗

  Journal of Extracellular Vesicles · 2020 · PMID 32158521
  not yet assessed
• 10th Anniversary of the European Association for Predictive, Preventive and Personalised (3P) Medicine - EPMA World Congress Supplement 2020 ↗

  The EPMA Journal · 2020 · PMID 32837665
  not yet assessed
• GeneSetCluster: a tool for summarizing and integrating gene-set analysis results ↗

  BMC Bioinformatics · 2020 · PMID 33028195
  not yet assessed
• The role of overweight in the association between the Mediterranean diet and the risk of type 2 diabetes mellitus: a mediation analysis among 21 585 UK biobank participants ↗

  International Journal of Epidemiology · 2020 · PMID 32754745
  not yet assessed
• MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells ↗

  Nucleic Acids Research · 2020 · PMID 33051686
  not yet assessed
• Immunometabolic Network Interactions of the Kynurenine Pathway in Cutaneous Malignant Melanoma ↗

  Frontiers in Oncology · 2020 · PMID 32117720
  not yet assessed
• Genome-wide investigation of DNA methylation in congenital adrenal hyperplasia ↗

  The Journal of Steroid Biochemistry and Molecular Biology · 2020 · PMID 32428554
  not yet assessed
• The human oral phageome is highly diverse and rich in jumbo phages ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• scMomentum: Inference of Cell-Type-Specific Regulatory Networks and Energy Landscapes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Metadata record for: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗

  UvA-DARE (University of Amsterdam) · 2020
  not yet assessed
• STATegra: Multi-omics data integration - A conceptual scheme and a bioinformatics pipeline ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Additional file 1 of GeneSetCluster: a tool for summarizing and integrating gene-set analysis results ↗

  Figshare · 2020
  not yet assessed
• Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility ↗

  Science · 2019 · PMID 31604244
  not yet assessed
• Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen ↗

  Nature Communications · 2019 · PMID 31209238
  not yet assessed
• Therapeutic efficacy of dimethyl fumarate in relapsing-remitting multiple sclerosis associates with ROS pathway in monocytes ↗

  Nature Communications · 2019 · PMID 31300673
  not yet assessed
• Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps ↗

  PLoS Computational Biology · 2019 · PMID 31682608
  not yet assessed
• EULAR points to consider for the use of big data in rheumatic and musculoskeletal diseases ↗

  Annals of the Rheumatic Diseases · 2019 · PMID 31229952
  not yet assessed
• Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression ↗

  EBioMedicine · 2019 · PMID 31053557
  not yet assessed
• Current status of use of big data and artificial intelligence in RMDs: a systematic literature review informing EULAR recommendations ↗

  RMD Open · 2019 · PMID 31413871
  not yet assessed
• Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Clinical Epigenetics · 2019 · PMID 31146783
  not yet assessed
• Associations of fat‐soluble micronutrients and redox biomarkers with frailty status in the FRAILOMIC initiative ↗

  Journal of Cachexia Sarcopenia and Muscle · 2019 · PMID 31436047
  not yet assessed
• Increased levels of soluble Receptor for Advanced Glycation End-products (RAGE) are associated with a higher risk of mortality in frail older adults ↗

  Age and Ageing · 2019 · PMID 31211360
  not yet assessed
• Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients ↗

  Scientific Reports · 2019 · PMID 31427643
  not yet assessed
• Phosphatase inhibitor PPP1R11 modulates resistance of human T cells toward Treg-mediated suppression of cytokine expression ↗

  Journal of Leukocyte Biology · 2019 · PMID 30882958
  not yet assessed
• Challenges in the Multivariate Analysis of Mass Cytometry Data: The Effect of Randomization ↗

  Cytometry Part A · 2019 · PMID 31692248
  not yet assessed
• Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation ↗

  PLoS Biology · 2019 · PMID 30978178
  not yet assessed
• Transcriptomic Analysis Of Extracellular Vesicles For Biomarker Discovery In Peripheral Artery Disease (Pad) ↗

  Atherosclerosis · 2019
  not yet assessed
• STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗

  Scientific Data · 2019 · PMID 31672995
  not yet assessed
• Abundance and diversity of resistomes differ between healthy human oral cavities and gut ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• A validated strategy to infer protein biomarkers from RNA-Seq by combining multiple mRNA splice variants and time-delay ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Single-cell RNA-seq analysis reveals the crucial role of Collagen Triplex Helix Repeat Containing 1 (CTHRC1) cardiac fibroblasts for ventricular remodeling after myocardial infarction ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• STATegra: a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Gene regulatory network of human GM-CSF secreting T helper cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Genome-wide investigation of DNA methylation in congenital adrenal hyperplasia ↗

  medRxiv · 2019
  not yet assessed
• Adhérence au régime méditerranéen, indice de masse corporelle et risque de diabète de type 2 : résultats de l’étude UK Biobank ↗

  Nutrition Clinique et Métabolisme · 2019
  not yet assessed
• mensxmachina/CyTOF-Randomization: Challenges in the multivariate analysis of mass cytometry data: the effect of randomization.

  King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2019
  not yet assessed
• Mediation analysis to understand the role of overweight on the relationship between Mediterranean diet and risk of type 2 diabetes mellitus: evidence from 21 612 UKBiobank participants

  HAL (Le Centre pour la Communication Scientifique Directe) · 2019
  not yet assessed
• Additional file 5: of Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Figshare · 2019
  not yet assessed
• Additional file 4: of Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Figshare · 2019
  not yet assessed
• Additional file 6: of Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Figshare · 2019
  not yet assessed
• Additional file 2: of Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Figshare · 2019
  not yet assessed
• Additional file 7: of Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Figshare · 2019
  not yet assessed
• Additional file 8: of Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Figshare · 2019
  not yet assessed
• Metadata record for: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗

  Figshare · 2019
  not yet assessed
• Metadata record for: STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse ↗

  Figshare · 2019
  not yet assessed
• Additional file 3: of Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis ↗

  Figshare · 2019
  not yet assessed
• DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis ↗

  Nature Communications · 2018 · PMID 29921915
  not yet assessed
• Network modules uncover mechanisms of skeletal muscle dysfunction in COPD patients ↗

  Journal of Translational Medicine · 2018 · PMID 29463285
  not yet assessed
• Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  BMC Biology · 2018 · PMID 29730990
  not yet assessed
• Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients ↗

  Human Molecular Genetics · 2018 · PMID 29325110
  not yet assessed
• Epigenetic Alterations Associated With Early Prenatal Dexamethasone Treatment ↗

  Journal of the Endocrine Society · 2018 · PMID 30623163
  not yet assessed
• Patterns of circulating fat-soluble vitamins and carotenoids and risk of frailty in four European cohorts of older adults ↗

  European Journal of Nutrition · 2018 · PMID 29380043
  not yet assessed
• Risk and temporal order of disease diagnosis of comorbidities in patients with COPD: a population health perspective ↗

  BMJ Open Respiratory Research · 2018 · PMID 29955364
  not yet assessed
• The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Controllability, Multiplexing, and Transfer Learning in Networks using Evolutionary Learning ↗

  arXiv (Cornell University) · 2018
  not yet assessed
• Projet SALAMANDER : Biomarqueurs salivaires du régime Méditerranéen associés à une protection au long terme contre le diabète de type 2

  2018
  not yet assessed
• Altered DNA Methylation in Peripheral T-cells from Patients with Congenital Adrenal Hyperplasia

  57th Annual ESPE · 2018
  not yet assessed
• Adhérence au régime Méditerranéen, indice de masse corporelle et risque de diabète de type 2 : Résultats de l'étude UKBiobank

  HAL (Le Centre pour la Communication Scientifique Directe) · 2018
  not yet assessed
• Controllability, Multiplexing, and Transfer Learning in Networks using\n Evolutionary Learning ↗

  arXiv (Cornell University) · 2018
  not yet assessed
• Additional file 8: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  Figshare · 2018
  not yet assessed
• Additional file 5: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018
  not yet assessed
• Epigenetic alterations associated with early prenatal dexamethasone treatment: Supplementary Figure 1 & 2 ↗

  Figshare · 2018
  not yet assessed
• Additional file 2: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  Figshare · 2018
  not yet assessed
• MOESM2 of Network modules uncover mechanisms of skeletal muscle dysfunction in COPD patients ↗

  Figshare · 2018
  not yet assessed
• Additional file 3: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  Figshare · 2018
  not yet assessed
• Additional file 7: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018
  not yet assessed
• Additional file 4: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) · 2018
  not yet assessed
• Epigenetic alterations associated with early prenatal dexamethasone treatment: Supplementary Table 1 & 2 ↗

  Figshare · 2018
  not yet assessed
• Additional file 6: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 ↗

  Figshare · 2018
  not yet assessed
• Software for the Integration of Multiomics Experiments in Bioconductor ↗

  Cancer Research · 2017 · PMID 29092936
  not yet assessed
• Functional genomics analysis of vitamin D effects on CD4+ T cells in vivo in experimental autoimmune encephalomyelitis ↗

  Proceedings of the National Academy of Sciences · 2017 · PMID 28196884
  not yet assessed
• Hypermethylation of MIR21 in CD4+ T cells from patients with relapsing-remitting multiple sclerosis associates with lower miRNA-21 levels and concomitant up-regulation of its target genes ↗

  Multiple Sclerosis Journal · 2017 · PMID 28766461
  not yet assessed
• Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Biology of Sex Differences · 2017 · PMID 29070082
  not yet assessed
• Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  BMC Bioinformatics · 2017 · PMID 29141580
  not yet assessed
• Iterative Systems Biology for Medicine – Time for advancing from network signatures to mechanistic equations ↗

  Current Opinion in Systems Biology · 2017
  not yet assessed
• Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology ↗

  Cell Systems · 2017 · PMID 28843483
  not yet assessed
• Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology ↗

  Cell Systems · 2017
  not yet assessed
• The Multiple Sclerosis Genomic Map: Role of peripheral immune cells and resident microglia in susceptibility ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Software for the integration of multi-omics experiments in Bioconductor ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Comment on “Epigenetics in the pathogenesis of RA” ↗

  Seminars in Immunopathology · 2017 · PMID 28497351
  not yet assessed
• OMIC SIGNATURES IN FRAILTY AND FRAILTY DIAGNOSIS ↗

  Innovation in Aging · 2017
  not yet assessed
• Editorial overview ↗

  Current Opinion in Systems Biology · 2017
  not yet assessed
• Projet SALAMANDER : Biomarqueurs salivaires du régime méditerranéen associés à une protection au long terme contre le diabète de type 2

  HAL (Le Centre pour la Communication Scientifique Directe) · 2017
  not yet assessed
• Additional file 5: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 18: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 11: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 14: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 16: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 20: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 25: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 28: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 10: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 33: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 2: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 23: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 27: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 21: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 17: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 24: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: Table S2. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 19: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 32: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 22: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 26: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 15: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 13: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 2: Table S1. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 29: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 8: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 12: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 30: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 4: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 9: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 31: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: Figure S1. of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: Table S3. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: Table S4. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 5: Figure S3. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: Table S3. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: Figure S1. of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies ↗

  Figshare · 2017
  not yet assessed
• Additional file 4: .Figure S2 of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: Figure S1. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: Figure S1. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 5: Figure S3. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: Table S4. of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• Additional file 4: .Figure S2 of Sex influences eQTL effects of SLE and Sjögren’s syndrome-associated genetic polymorphisms ↗

  Figshare · 2017
  not yet assessed
• A survey of best practices for RNA-seq data analysis ↗

  Genome biology · 2016 · PMID 26813401
  not yet assessed
• Proposals for enhanced health risk assessment and stratification in an integrated care scenario ↗

  BMJ Open · 2016 · PMID 27084274
  not yet assessed
• ChainRank, a chain prioritisation method for contextualisation of biological networks ↗

  BMC Bioinformatics · 2016 · PMID 26729273
  not yet assessed
• From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  BMC Bioinformatics · 2016 · PMID 28185567
  not yet assessed
• A perspective on bridging scales and design of models using low-dimensional manifolds and data-driven model inference ↗

  Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · 2016 · PMID 27698038
  not yet assessed
• High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis ↗

  Genome Medicine · 2016 · PMID 27876072
  not yet assessed
• A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions ↗

  BMC Bioinformatics · 2016 · PMID 27294826
  not yet assessed
• Conditional Disease Development extracted from Longitudinal Health Care Cohort Data using Layered Network Construction ↗

  Scientific Reports · 2016 · PMID 27211115
  not yet assessed
• Health risk assessment and stratification in an integrated care scenario ↗

  International Journal of Integrated Care · 2016
  not yet assessed
• Erratum to: A survey of best practices for RNA-seq data analysis ↗

  Genome biology · 2016 · PMID 27565134
  not yet assessed
• Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions ↗

  BMC Bioinformatics · 2016
  not yet assessed
• DNA Methylation Signatures Associated with Prenatal Dexamethasone Treatment

  55th ESPE Meeting · 2016
  not yet assessed
• Additional file 14: Table S3. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 3: Table S1. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 1: Table S8. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 15: Tables S4, S5 and S6. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 2: of High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis ↗

  Figshare · 2016
  not yet assessed
• Additional file 1: of High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis ↗

  Figshare · 2016
  not yet assessed
• Additional file 16: Table S7. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 4: Table S2. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 10: Figure S6. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 2: Figure S1. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 11: Figure S7. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 8: Figure S4. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 3: of High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis ↗

  Figshare · 2016
  not yet assessed
• Additional file 12: Figure S8. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 10: Figure S6. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 13: Figure S9. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 5: Figure S2. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 9: Figure S5. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 6: of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 11: Figure S7. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 5: Figure S2. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 6: of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 3: of High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis ↗

  Figshare · 2016
  not yet assessed
• Additional file 8: Figure S4. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 7: Figure S3. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 9: Figure S5. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 12: Figure S8. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 2: Figure S1. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 7: Figure S3. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Additional file 13: Figure S9. of From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration ↗

  Figshare · 2016
  not yet assessed
• Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naïve-to-memory B-cell transition ↗

  Nature Communications · 2015 · PMID 26081581
  not yet assessed
• Public data and open source tools for multi-assay genomic investigation of disease ↗

  Briefings in Bioinformatics · 2015 · PMID 26463000
  not yet assessed
• Optimization in Biology Parameter Estimation and the Associated Optimization Problem ↗

  Studies in mechanobiology, tissue engineering and biomaterials · 2015
  not yet assessed
• Laboratory biomarkers and frailty: presentation of the FRAILOMIC initiative ↗

  Clinical Chemistry and Laboratory Medicine (CCLM) · 2015 · PMID 25993734
  not yet assessed
• Uncertainty in Biology ↗

  Studies in mechanobiology, tissue engineering and biomaterials · 2015
  not yet assessed
• Assessment of health status and program performance in patients on long-term oxygen therapy ↗

  Respiratory Medicine · 2015 · PMID 25771036
  not yet assessed
• Assessing the consistency of public human tissue RNA-seq data sets ↗

  Briefings in Bioinformatics · 2015 · PMID 25829468
  not yet assessed
• From Systems Understanding to Personalized Medicine: Lessons and Recommendations Based on a Multidisciplinary and Translational Analysis of COPD ↗

  Methods in molecular biology · 2015 · PMID 26677188
  not yet assessed
• Neuroswarm: A Methodology to Explore the Constraints that Function Imposes on Simulation Parameters in Large-Scale Networks of Biological Neurons ↗

  Studies in mechanobiology, tissue engineering and biomaterials · 2015
  not yet assessed
• An Introduction to Uncertainty in the Development of Computational Models of Biological Processes ↗

  Studies in mechanobiology, tissue engineering and biomaterials · 2015
  not yet assessed
• Computational Modeling Under Uncertainty: Challenges and Opportunities ↗

  Studies in mechanobiology, tissue engineering and biomaterials · 2015
  not yet assessed
• Introduction to Data Types in Epigenomics ↗

  Translational bioinformatics · 2015
  not yet assessed
• An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗

  Figshare · 2015
  not yet assessed
• An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗

  Epigenetics · 2014 · PMID 25484259
  not yet assessed
• Cesarean delivery and hematopoietic stem cell epigenetics in the newborn infant: implications for future health? ↗

  American Journal of Obstetrics and Gynecology · 2014 · PMID 24996659
  not yet assessed
• Systems Medicine: from molecular features and models to the clinic in COPD ↗

  Journal of Translational Medicine · 2014 · PMID 25471042
  not yet assessed
• The COPD Knowledge Base: enabling data analysis and computational simulation in translational COPD research ↗

  Journal of Translational Medicine · 2014 · PMID 25471253
  not yet assessed
• Non-HLA genes PTPN22, CDK6 and PADI4 are associated with specific autoantibodies in HLA-defined subgroups of rheumatoid arthritis ↗

  Arthritis Research & Therapy · 2014 · PMID 25138370
  not yet assessed
• STATegra EMS: an Experiment Management System for complex next-generation omics experiments ↗

  BMC Systems Biology · 2014 · PMID 25033091
  not yet assessed
• Synergy-COPD: a systems approach for understanding and managing chronic diseases ↗

  Journal of Translational Medicine · 2014 · PMID 25472826
  not yet assessed
• Oxygen Pathway Modeling Estimates High Reactive Oxygen Species Production above the Highest Permanent Human Habitation ↗

  PLoS ONE · 2014 · PMID 25375931
  not yet assessed
• Workforce preparation: the Biohealth computing model for Master and PhD students ↗

  Journal of Translational Medicine · 2014 · PMID 25472654
  not yet assessed
• Data integration in the era of omics: current and future challenges ↗

  BMC Systems Biology · 2014 · PMID 25032990
  not yet assessed
• Chronic Obstructive Pulmonary Disease heterogeneity: challenges for health risk assessment, stratification and management ↗

  Journal of Translational Medicine · 2014 · PMID 25472887
  not yet assessed
• Biomedical research in a Digital Health Framework ↗

  Journal of Translational Medicine · 2014 · PMID 25472554
  not yet assessed
• Predictive medicine: outcomes, challenges and opportunities in the Synergy-COPD project ↗

  Journal of Translational Medicine · 2014 · PMID 25472742
  not yet assessed
• Simulation environment and graphical visualization environment: a COPD use-case ↗

  Journal of Translational Medicine · 2014 · PMID 25471327
  not yet assessed
• STATegra EMS, an experiment management system for NGS data integration ↗

  F1000Research · 2014
  not yet assessed
• Methylome characterization of CD4+ T cells in multiple sclerosis — Establishing a role for miR-21 in autoimmune disease ↗

  Journal of Neuroimmunology · 2014
  not yet assessed
• An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗

  Figshare · 2014
  not yet assessed
• An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training ↗

  Figshare · 2014
  not yet assessed
• An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform ↗

  Epigenetics · 2013 · PMID 23422812
  not yet assessed
• Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression ↗

  Journal of Autoimmunity · 2013 · PMID 23306098
  not yet assessed
• Serotonin Regulates Performance Nonmonotonically in a Spatial Working Memory Network ↗

  Cerebral Cortex · 2013 · PMID 23629582
  not yet assessed
• Importance of mitochondrial P O 2 in maximal O2 transport and utilization: A theoretical analysis ↗

  Respiratory Physiology & Neurobiology · 2013 · PMID 24012990
  not yet assessed
• Implementation of the CDC translational informatics platform - from genetic variants to the national Swedish Rheumatology Quality Register ↗

  Journal of Translational Medicine · 2013 · PMID 23548156
  not yet assessed
• Network Biology Empowering Detection and Understanding of Interactions Between Genetic Factors in Development of Complex Phenotypes ↗

  Elsevier eBooks · 2013
  not yet assessed
• Endurance training changes the DNA methylation pattern in human skeletal muscle ↗

  The FASEB Journal · 2013
  not yet assessed
• List of Contributors ↗

  Elsevier eBooks · 2013
  not yet assessed
• A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data ↗

  Bioinformatics · 2012 · PMID 23175756
  not yet assessed
• Short Communication Comparison of the prevalence and distribution of human papillomavirus infection and cervical lesions between urban and native habitants of an Amazonian region of Peru ↗

  Genetics and Molecular Research · 2012 · PMID 22911594
  not yet assessed
• ParkDB: a Parkinson's disease gene expression database ↗

  Database · 2011 · PMID 21593080
  not yet assessed
• Pre-B cell to macrophage transdifferentiation without significant promoter DNA methylation changes ↗

  Nucleic Acids Research · 2011 · PMID 22086955
  not yet assessed
• Epigenetic alterations in autoimmune disease ↗

  Journal of Translational Medicine · 2011
  not yet assessed
• Workflow for generating competing hypothesis from models with parameter uncertainty ↗

  Interface Focus · 2011 · PMID 22670212
  not yet assessed
• Data Integration: Towards Understanding Biological Complexity ↗

  2011
  not yet assessed
• Non-HLA-DRB1 RA-associated risk alleles associate with anti-CCP and specific ACPA levels ↗

  Annals of the Rheumatic Diseases · 2011
  not yet assessed
• Database tool ParkDB: a Parkinson's disease gene expression database

  2011
  not yet assessed
• Reconciling Coherent Oscillation with Modulationof Irregular Spiking Activity in Selective Attention:Gamma-Range Synchronization between Sensoryand Executive Cortical Areas ↗

  Journal of Neuroscience · 2010 · PMID 20181583
  not yet assessed
• Distribution of Human Papillomavirus Types in Women from Valencia, Spain, with Abnormal Cytology ↗

  Acta Cytologica · 2010 · PMID 20391971
  not yet assessed
• Prevalence and distribution of human papillomavirus findings in swab specimens from gynaecology clinics of the east coast of Spain ↗

  Scandinavian Journal of Infectious Diseases · 2010 · PMID 20210514
  not yet assessed
• The Travelling Salesman’s Problem: A self-adapting PSO-ACS algorithm ↗

  2007
  not yet assessed