Jonas Korlach

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic.⚑
  2013 L1 44/100 ⚑

1 assessed by us (0 reproduced) · 189 not yet assessed — every PubMed paper on record, linked below.

• The Vertebrate Genomes Project Phase I: A global reference genome resource ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 42395566
  not yet assessed
• Using HiFi Long-Read Whole Genome Sequencing To Enhance Diagnosis In Patients With Subfertility And/Or Recurrent Pregnancy Loss ↗

  medRxiv · 2026
  not yet assessed
• Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition ↗

  Nature Genetics · 2025 · PMID 39880924
  not yet assessed
• CiFi: accurate long-read chromosome conformation capture with low-input requirements ↗

  Nature Communications · 2025 · PMID 41360792
  not yet assessed
• CiFi: Accurate long-read chromosome conformation capture with low-input requirements ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 39975366
  not yet assessed
• Сырьевые растения под пологом ельников Ленинградской области ↗

  Известия СПбЛТА · 2025
  not yet assessed
• ОБЪЕМЫ УГЛЕРОДА В ЖИВОМ НАПОЧВЕННОМ ПОКРОВЕ ПОД ПОЛОГОМ ЕЛЬНИКОВ КИСЛИЧНОГО ТИПА ЛЕСА ↗

  Леса России и хозяйство в них · 2025
  not yet assessed
• Monoallelically expressed noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression ↗

  eLife · 2024 · PMID 38240312
  not yet assessed
• NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource ↗

  Microbial Genomics · 2023 · PMID 37194944
  not yet assessed
• Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37808736
  not yet assessed
• Abstract LB078: pbfusion: Detecting gene-fusion and other transcriptional abnormalities using PacBio HiFi data ↗

  Cancer Research · 2023
  not yet assessed
• Method for sequencing nucleic acid molecules

  OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) · 2023
  not yet assessed
• The complete sequence of a human genome ↗

  Science · 2022 · PMID 35357919
  not yet assessed
• Semi-automated assembly of high-quality diploid human reference genomes ↗

  Nature · 2022 · PMID 36261518
  not yet assessed
• Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes ↗

  Genetics in Medicine · 2022 · PMID 35305867
  not yet assessed
• Evolution of the ancestral mammalian karyotype and syntenic regions ↗

  Proceedings of the National Academy of Sciences · 2022 · PMID 36161960
  not yet assessed
• Africa: sequence 100,000 species to safeguard biodiversity ↗

  Nature · 2022 · PMID 35292740
  not yet assessed
• Germline mosaicism of a missense variant in <scp> <i>KCNC2</i> </scp> in a multiplex family with autism and epilepsy characterized by long‐read sequencing ↗

  American Journal of Medical Genetics Part A · 2022 · PMID 35366058
  not yet assessed
• Long‐read HiFi sequencing of <i>NUDT15</i> : Phased full‐gene haplotyping and pharmacogenomic allele discovery ↗

  Human Mutation · 2022 · PMID 36057977
  not yet assessed
• Automated assembly of high-quality diploid human reference genomes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Monoallelically-expressed Noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Author response: Monoallelically expressed noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression ↗

  2022
  not yet assessed
• Towards complete and error-free genome assemblies of all vertebrate species ↗

  Nature · 2021 · PMID 33911273
  not yet assessed
• Population genomics of the critically endangered kākāpō ↗

  Cell Genomics · 2021 · PMID 36777713
  not yet assessed
• Platypus and echidna genomes reveal mammalian biology and evolution ↗

  Nature · 2021 · PMID 33408411
  not yet assessed
• Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Genome biology · 2021 · PMID 33910595
  not yet assessed
• Structural and functional diversity among Type III restriction-modification systems that confer host DNA protection via methylation of the N4 atom of cytosine ↗

  PLoS ONE · 2021 · PMID 34228724
  not yet assessed
• The complete sequence of a human genome ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Germline mosaicism of a missense variant in <i>KCNC2</i> in a multiplex family with autism and epilepsy ↗

  medRxiv · 2021
  not yet assessed
• IGenomic answers for children: Dynamic analyses of &gt;1000 pediatric rare disease genomes ↗

  medRxiv · 2021
  not yet assessed
• Additional file 2 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 7 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 3 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 5 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 11 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 10 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 6 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 9 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Additional file 4 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications ↗

  Figshare · 2021
  not yet assessed
• Sex chromosome evolution in parasitic nematodes of humans ↗

  Nature Communications · 2020 · PMID 32327641
  not yet assessed
• Extreme enrichment of VNTR-associated polymorphicity in human subtelomeres: genes with most VNTRs are predominantly expressed in the brain ↗

  Translational Psychiatry · 2020 · PMID 33139705
  not yet assessed
• Nearly Complete Genome Sequence of Brugia malayi Strain FR3 ↗

  Microbiology Resource Announcements · 2020 · PMID 32527783
  not yet assessed
• Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea ↗

  UNC Libraries · 2020
  not yet assessed
• Complete vertebrate mitogenomes reveal widespread gene duplications and repeats ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Multi-platform discovery of haplotype-resolved structural variation in human genomes ↗

  Nature Communications · 2019 · PMID 30992455
  not yet assessed
• The vaginal microbiome and preterm birth ↗

  Nature Medicine · 2019 · PMID 31142849
  not yet assessed
• Human-specific tandem repeat expansion and differential gene expression during primate evolution ↗

  Proceedings of the National Academy of Sciences · 2019 · PMID 31659027
  not yet assessed
• A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing ↗

  Genes · 2019 · PMID 30669388
  not yet assessed
• A high-quality genome assembly from a single, field-collected spotted lanternfly ( <i>Lycorma delicatula</i> ) using the PacBio Sequel II system ↗

  GigaScience · 2019 · PMID 31609423
  not yet assessed
• Genomic Studies Need Diversity ↗

  Scientific American · 2019 · PMID 39010357
  not yet assessed
• A High-Quality Genome Assembly from a Single, Field-collected Spotted Lanternfly ( <i>Lycorma delicatula</i> ) using the PacBio Sequel II System ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Porous Zero-Mode Waveguides for Picogram-Level DNA Sequencing ↗

  Biophysical Journal · 2019
  not yet assessed
• Improved reference genome of Aedes aegypti informs arbovirus vector control ↗

  Nature · 2018 · PMID 30429615
  not yet assessed
• Porous Zero-Mode Waveguides for Picogram-Level DNA Capture ↗

  Nano Letters · 2018 · PMID 30484321
  not yet assessed
• A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaiiʻs Last Remaining Crow Species ↗

  Genes · 2018 · PMID 30071683
  not yet assessed
• Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus ↗

  Scientific Reports · 2018 · PMID 29895987
  not yet assessed
• Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data ↗

  Genome Research · 2018 · PMID 29295848
  not yet assessed
• A high-quality, long-read <i>de novo</i> genome assembly to aid conservation of Hawaii’s last remaining crow species ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Author Correction: Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus ↗

  Scientific Reports · 2018 · PMID 30171192
  not yet assessed
• A High-Quality De <i>Novo</i> Genome Assembly from a Single Mosquito using PacBio Sequencing ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Long-read genome sequencing identifies causal structural variation in a Mendelian disease ↗

  Genetics in Medicine · 2017 · PMID 28640241
  not yet assessed
• <i>De novo</i> PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads ↗

  GigaScience · 2017 · PMID 29020750
  not yet assessed
• Length-independent DNA packing into nanopore zero-mode waveguides for low-input DNA sequencing ↗

  Nature Nanotechnology · 2017 · PMID 28892102
  not yet assessed
• Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection ↗

  Gastroenterology · 2017 · PMID 29066327
  not yet assessed
• Identification of a <i>Pseudomonas aeruginosa</i> PAO1 DNA Methyltransferase, Its Targets, and Physiological Roles ↗

  mBio · 2017 · PMID 28223461
  not yet assessed
• Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori ↗

  Scientific Reports · 2017 · PMID 29170397
  not yet assessed
• Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing ↗

  Standards in Genomic Sciences · 2017 · PMID 28344744
  not yet assessed
• Pacific Biosciences Sequencing and IMGT/HighV-QUEST Analysis of Full-Length Single Chain Fragment Variable from an In Vivo Selected Phage-Display Combinatorial Library ↗

  Frontiers in Immunology · 2017 · PMID 29326697
  not yet assessed
• Complete Genome Sequence of Moraxella catarrhalis Strain CCRI-195ME, Isolated from the Middle Ear ↗

  Genome Announcements · 2017 · PMID 28546484
  not yet assessed
• Multi-platform discovery of haplotype-resolved structural variation in human genomes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Amplification-free, CRISPR-Cas9 Targeted Enrichment and SMRT Sequencing of Repeat-Expansion Disease Causative Genomic Regions ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Improved <i>Aedes aegypti</i> mosquito reference genome assembly enables biological discovery and vector control ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• <i>De Novo</i> PacBio long-read and phased avian genome assemblies correct and add to genes important in neuroscience research ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Measuring CpG Methylation by SMRT Sequencing ↗

  Elsevier eBooks · 2017
  not yet assessed
• The Epigenomic Landscape of Prokaryotes ↗

  PLoS Genetics · 2016 · PMID 26870957
  not yet assessed
• Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding ↗

  PLoS Genetics · 2016 · PMID 27082250
  not yet assessed
• Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing ↗

  mBio · 2016 · PMID 26861018
  not yet assessed
• The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers ↗

  mBio · 2016 · PMID 27651357
  not yet assessed
• AgIn: measuring the landscape of CpG methylation of individual repetitive elements ↗

  Bioinformatics · 2016 · PMID 27318202
  not yet assessed
• Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes ↗

  Applied and Environmental Microbiology · 2016 · PMID 27836852
  not yet assessed
• Single-molecule DNA hybridisation studied by using a modified DNA sequencer: a comparison with surface plasmon resonance data ↗

  Methods and Applications in Fluorescence · 2016
  not yet assessed
• Discovery and genotyping of structural variation from long-read haploid genome sequence data ↗

  Genome Research · 2016 · PMID 27895111
  not yet assessed
• Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding ↗

  PLoS Genetics · 2016
  not yet assessed
• Long-read whole genome sequencing identifies causal structural variation in a Mendelian disease ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2016
  not yet assessed
• Abstract 5289: Enhance both precision and sensitivity of fusion gene detection by hybrid sequencing ↗

  Cancer Research · 2016
  not yet assessed
• Nanopore Zero-Mode Waveguides for DNA Sequencing and Beyond ↗

  Biophysical Journal · 2016
  not yet assessed
• Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing ↗

  Nucleic Acids Research · 2015 · PMID 26040699
  not yet assessed
• A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae ↗

  Nature Communications · 2015 · PMID 26215614
  not yet assessed
• Enzymatic Degradation of Phenazines Can Generate Energy and Protect Sensitive Organisms from Toxicity ↗

  mBio · 2015 · PMID 26507234
  not yet assessed
• Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria meningitidis ↗

  Nucleic Acids Research · 2015 · PMID 25845594
  not yet assessed
• Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars ↗

  PLoS ONE · 2015 · PMID 25860355
  not yet assessed
• Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System ↗

  mBio · 2015 · PMID 26081630
  not yet assessed
• Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing ↗

  Nucleic Acids Research · 2015 · PMID 25662217
  not yet assessed
• DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates ↗

  PLoS ONE · 2015 · PMID 26656597
  not yet assessed
• Towards a better understanding of the Coffea Arabica genome structure.

  Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) · 2015
  not yet assessed
• Complete Genome Sequence of the Hypervirulent Bacterium Clostridium difficile Strain G46, Ribotype 027 ↗

  Genome Announcements · 2015 · PMID 25814591
  not yet assessed
• Complete Genome Sequence of <i>Curtobacterium</i> sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts ↗

  Genome Announcements · 2015 · PMID 26722011
  not yet assessed
• Complete Genome Sequence of <i>Streptomyces</i> sp. Strain CCM_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts ↗

  Genome Announcements · 2015 · PMID 26722012
  not yet assessed
• Similarity, identity, and coverage of select hydrogenase proteins comparing the &lt;i&gt;Rubrivivax gelatinosus&lt;/i&gt; CBS sensor and uptake hydrogenases to other bacterial species including &lt;i&gt;Ralstonia eutropha&lt;/i&gt; H16. ↗

  Figshare · 2015
  not yet assessed
• Dihaploid Coffea arabica Genome Sequencing and Assembly

  Plant and Animal Genome XXIII Conference · 2015
  not yet assessed
• Nanopore-Enhanced Positioning of Molecules in Zero-Mode Waveguides ↗

  Biophysical Journal · 2015
  not yet assessed
• Summary of motifs and methyltransferases found in each &lt;i&gt;Salmonella&lt;/i&gt; genome. ↗

  Figshare · 2015
  not yet assessed
• Diagram of the interpulse duration (IPD) ratio of three novel motifs identified in three &lt;i&gt;Salmonella&lt;/i&gt; serovars. ↗

  Figshare · 2015
  not yet assessed
• Dihaploid Coffea arabica genome sequencing and assembly [W180]

  Agritrop (Cirad) · 2015
  not yet assessed
• Resolving the complexity of the human genome using single-molecule sequencing ↗

  Nature · 2014 · PMID 25383537
  not yet assessed
• Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae ↗

  Science Translational Medicine · 2014 · PMID 25232178
  not yet assessed
• A random six-phase switch regulates pneumococcal virulence via global epigenetic changes ↗

  Nature Communications · 2014 · PMID 25268848
  not yet assessed
• Improved performance of the PacBio SMRT technology for 16S rDNA sequencing ↗

  Journal of Microbiological Methods · 2014 · PMID 24978594
  not yet assessed
• Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences ↗

  Nature Communications · 2014 · PMID 24899568
  not yet assessed
• Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7 ↗

  BMC Genomics · 2014 · PMID 24410921
  not yet assessed
• Whole-Genome Assembly of Klebsiella pneumoniae Coproducing NDM-1 and OXA-232 Carbapenemases Using Single-Molecule, Real-Time Sequencing ↗

  Antimicrobial Agents and Chemotherapy · 2014 · PMID 25070096
  not yet assessed
• Comparative Genomics of the Campylobacter lari Group ↗

  Genome Biology and Evolution · 2014 · PMID 25381664
  not yet assessed
• ModM DNA methyltransferase methylome analysis reveals a potential role for <i>Moraxella catarrhalis</i> phasevarions in otitis media ↗

  The FASEB Journal · 2014 · PMID 25183669
  not yet assessed
• Reversible Positioning of Single Molecules inside Zero-Mode Waveguides ↗

  Nano Letters · 2014 · PMID 25209321
  not yet assessed
• Identification of Restriction-Modification Systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT Sequencing and Associated Methylome Analysis ↗

  PLoS ONE · 2014 · PMID 24743599
  not yet assessed
• Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in <i>Coprinopsis cinerea</i> ↗

  Proceedings of the National Academy of Sciences · 2014 · PMID 25406324
  not yet assessed
• Genome Annotation Provides Insight into Carbon Monoxide and Hydrogen Metabolism in Rubrivivax gelatinosus ↗

  PLoS ONE · 2014 · PMID 25479613
  not yet assessed
• Novel Giant Siphovirus from Bacillus anthracis Features Unusual Genome Characteristics ↗

  PLoS ONE · 2014 · PMID 24475065
  not yet assessed
• First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak ↗

  Genome Announcements · 2014 · PMID 25359917
  not yet assessed
• Genome Sequence and Methylome of Soil Bacterium <i>Gemmatirosa kalamazoonensis</i> KBS708 ^T , a Member of the Rarely Cultivated <i>Gemmatimonadetes</i> Phylum ↗

  Genome Announcements · 2014 · PMID 24699952
  not yet assessed
• Complete Genome Sequence of a Klebsiella pneumoniae Isolate with Chromosomally Encoded Carbapenem Resistance and Colibactin Synthesis Loci ↗

  Genome Announcements · 2014 · PMID 25540345
  not yet assessed
• Complete Genome Sequences of Two Escherichia coli O145:H28 Outbreak Strains of Food Origin ↗

  Genome Announcements · 2014 · PMID 24855308
  not yet assessed
• Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever ↗

  Genome Announcements · 2014 · PMID 24526647
  not yet assessed
• Returning to more finished genomes ↗

  Genomics Data · 2014 · PMID 26484068
  not yet assessed
• Long-Read, Single Molecule, Real-Time (SMRT) DNA Sequencing for Metagenomic Applications ↗

  Elsevier eBooks · 2014
  not yet assessed
• Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5− Strain Isolated from Chicken Breast ↗

  Genome Announcements · 2014
  not yet assessed
• Fully Assembled Genome Sequence for Salmonella enterica subsp. <i>enterica</i> Serovar Javiana CFSAN001992 ↗

  Genome Announcements · 2014
  not yet assessed
• Reconstructing complex regions of genomes using long-read sequencing technology ↗

  Genome Research · 2014 · PMID 24418700
  not yet assessed
• Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

  RePEc: Research Papers in Economics · 2014
  not yet assessed
• The New World of Isoform Sequencing ↗

  Genetic Engineering & Biotechnology News · 2014
  not yet assessed
• List of Contributors ↗

  Elsevier eBooks · 2014
  not yet assessed
• Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data ↗

  Nature Methods · 2013 · PMID 23644548
  not yet assessed
• Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans ↗

  Nature Communications · 2013 · PMID 23612305
  not yet assessed
• Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription ↗

  Journal of Nanobiotechnology · 2013 · PMID 23552456
  not yet assessed
• Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation ↗

  BMC Biology · 2013 · PMID 23339471
  not yet assessed
• The complex methylome of the human gastric pathogen <i>Helicobacter pylori</i> ↗

  Nucleic Acids Research · 2013 · PMID 24302578
  not yet assessed
• Global methylation state at base-pair resolution of the <i>Caulobacter</i> genome throughout the cell cycle ↗

  Proceedings of the National Academy of Sciences · 2013 · PMID 24218615
  not yet assessed
• Comprehensive Methylome Characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at Single-Base Resolution ↗

  PLoS Genetics · 2013 · PMID 23300489
  not yet assessed
• The Impact of Aminoglycosides on the Dynamics of Translation Elongation ↗

  Cell Reports · 2013 · PMID 23416053
  not yet assessed
• Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Dependence of Polymerase Kinetic⚑

  PLoS Computational Biology · 2013 · PMID 23516341
  L1 44/100 ⚑
• Single-molecule fluorescence imaging of processive myosin with enhanced background suppression using linear zero-mode waveguides (ZMWs) and convex lens induced confinement (CLIC) ↗

  Optics Express · 2013 · PMID 23389011
  not yet assessed
• Exploring the Roles of DNA Methylation in the Metal-Reducing Bacterium Shewanella oneidensis MR-1 ↗

  Journal of Bacteriology · 2013 · PMID 23995632
  not yet assessed
• Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5− Strain Isolated from Chicken Breast ↗

  Genome Announcements · 2013 · PMID 24356834
  not yet assessed
• Fully Assembled Genome Sequence for Salmonella enterica subsp. <i>enterica</i> Serovar Javiana CFSAN001992 ↗

  Genome Announcements · 2013 · PMID 23516208
  not yet assessed
• Neolithic human mitochondrial haplogroup H genomes and the genetic origins of Europeans

  The 82nd Annual Meeting of the American Association of Physical Anthropologists, Knoxville, Tennessee · 2013
  not yet assessed
• 207 Nanopore immobilization of DNA polymerase enhances single-molecule sequencing ↗

  Journal of Biomolecular Structure and Dynamics · 2013
  not yet assessed
• Erratum: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing ↗

  Nature Biotechnology · 2013
  not yet assessed
• Observing Prokaryotic Translation Elongation in Real-Time using Single-Molecule Fluorescence ↗

  Biophysical Journal · 2013
  not yet assessed
• PacBio Only Assembly with Low Genomic DNA Input

  eScholarship (California Digital Library) · 2013
  not yet assessed
• The birth of the Epitranscriptome: deciphering the function of RNA modifications ↗

  Genome biology · 2012 · PMID 23113984
  not yet assessed
• Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing ↗

  Nature Biotechnology · 2012 · PMID 23138224
  not yet assessed
• The methylomes of six bacteria ↗

  Nucleic Acids Research · 2012 · PMID 23034806
  not yet assessed
• Going beyond five bases in DNA sequencing ↗

  Current Opinion in Structural Biology · 2012 · PMID 22575758
  not yet assessed
• Heterogeneous pathways and timing of factor departure during translation initiation ↗

  Nature · 2012 · PMID 22722848
  not yet assessed
• Genome Sequence of “Candidatus Microthrix parvicella” Bio17-1, a Long-Chain-Fatty-Acid-Accumulating Filamentous Actinobacterium from a Biological Wastewater Treatment Plant ↗

  Journal of Bacteriology · 2012 · PMID 23144412
  not yet assessed
• Single Molecule, Real-Time DNA Sequencing Yields a Clearer Picture of Biological Complexity: Helps Scientists Close Genomes, Study Linked Variants, and Detect Base Modifications ↗

  Industrial Biotechnology · 2012
  not yet assessed
• Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases ↗

  Genome Research · 2012 · PMID 23093720
  not yet assessed
• Zero-Mode Waveguides ↗

  2012
  not yet assessed
• Single-Molecule Sequencing ↗

  2012
  not yet assessed
• Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing ↗

  Nucleic Acids Research · 2011 · PMID 22156058
  not yet assessed
• Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine ↗

  Nature Methods · 2011 · PMID 22101853
  not yet assessed
• Direct Detection and Sequencing of Damaged DNA Bases ↗

  Genome Integrity · 2011 · PMID 22185597
  not yet assessed
• DNA Translocation Dynamics of HIV Reverse Transcriptase Revealed Through Single Molecule Kinetics of Nucleotide Binding ↗

  Biophysical Journal · 2011
  not yet assessed
• Assembly and Regulation of the Human RNA Polymerase II Preinitiation Complex: A Single-Molecule Approach to a Complex Biological System ↗

  Biophysical Journal · 2011
  not yet assessed
• Single-Molecule, Real-Time (SMRT™) Monitoring of Biomolecules ↗

  Optics in the Life Sciences · 2011
  not yet assessed
• Direct detection of DNA methylation during single-molecule, real-time sequencing ↗

  Nature Methods · 2010 · PMID 20453866
  not yet assessed
• Real-time tRNA transit on single translating ribosomes at codon resolution ↗

  Nature · 2010 · PMID 20393556
  not yet assessed
• Real-Time DNA Sequencing from Single Polymerase Molecules ↗

  Methods in enzymology on CD-ROM/Methods in enzymology · 2010 · PMID 20580975
  not yet assessed
• Abstract 1154: Direct detection of DNA methylation and mutagenic damage through single-molecule, real-time (SMRTTM) DNA sequencing ↗

  Cancer Research · 2010
  not yet assessed
• Realtime Observation of tRNA Dynamics at High Concentrations in Single Molecule Translation ↗

  Biophysical Journal · 2010
  not yet assessed
• Real-time DNA Synthesis Dynamics Of Single f29 DNA Polymerase Molecules With Base Pair Resolution ↗

  Biophysical Journal · 2009
  not yet assessed
• Nucleosides, Nucleotides and Nucleic Acids

  2009
  not yet assessed
• Real-Time DNA Sequencing from Single Polymerase Molecules ↗

  Science · 2008 · PMID 19023044
  not yet assessed
• Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures ↗

  Proceedings of the National Academy of Sciences · 2008 · PMID 18216253
  not yet assessed
• Conformational changes of calmodulin upon Ca ²⁺ binding studied with a microfluidic mixer ↗

  Proceedings of the National Academy of Sciences · 2008 · PMID 18178620
  not yet assessed
• Long, Processive Enzymatic DNA Synthesis Using 100% Dye-Labeled Terminal Phosphate-Linked Nucleotides ↗

  Nucleosides Nucleotides & Nucleic Acids · 2008 · PMID 18711669
  not yet assessed
• Achieving Uniform Mixing in a Microfluidic Device:  Hydrodynamic Focusing Prior to Mixing ↗

  Analytical Chemistry · 2006 · PMID 16808455
  not yet assessed
• Trapping, Deformation, and Rotation of Giant Unilamellar Vesicles in Octode Dielectrophoretic Field Cages ↗

  Biophysical Journal · 2005 · PMID 15863477
  not yet assessed
• Detection of motional heterogeneities in lipid bilayer membranes by dual probe fluorescence correlation spectroscopy ↗

  Biochimica et Biophysica Acta (BBA) - Biomembranes · 2005 · PMID 15737326
  not yet assessed
• Focal Volume Confinement by Submicrometer-Sized Fluidic Channels ↗

  Analytical Chemistry · 2004 · PMID 15018559
  not yet assessed
• Spontaneous nucleotide exchange in low molecular weight GTPases by fluorescently labeled γ-phosphate-linked GTP analogs ↗

  Proceedings of the National Academy of Sciences · 2004 · PMID 14973186
  not yet assessed
• Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations ↗

  Science · 2003 · PMID 12560545
  not yet assessed
• Zero-mode waveguides for single molecule analysis and fast DNA sequencing ↗

  2003
  not yet assessed
• DNA Fragment Sizing by Single Molecule Detection in Submicrometer-Sized Closed Fluidic Channels ↗

  Analytical Chemistry · 2002 · PMID 11922312
  not yet assessed
• DNA Fragment Sizing and Fluorescence Correlation Spectroscopy in Nanofabricated Channels. ↗

  2001
  not yet assessed
• Nanofabricated Device for Fluorescence Correlation Spectroscopy in Sub-Femtoliter Volumes ↗

  2000
  not yet assessed
• Characterization of lipid bilayer phases by confocal microscopy and fluorescence correlation spectroscopy ↗

  Proceedings of the National Academy of Sciences · 1999 · PMID 10411897
  not yet assessed
• Amperometric pH regulation – a flexible tool for rapid and precise temporal control over the pH of an electrolyte solution ↗

  Electrophoresis · 1998 · PMID 9548277
  not yet assessed
• pH‐Regulated electroretention chromatography: Towards a new method for the separation of proteins according to their isoelectric points ↗

  Electrophoresis · 1998 · PMID 9662175
  not yet assessed
• Developmental patterns during direct somatic embryogenesis in protoplast cultures of european larch (Larix decidua Mill.) ↗

  Plant Cell Reports · 1995 · PMID 24185784
  not yet assessed