Danny A. Bitton

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
  2014 L1 68/100

1 assessed by us (0 reproduced) · 58 not yet assessed — every PubMed paper on record, linked below.

• Ovo, an open-source ecosystem for de novo protein design ↗

  Communications Biology · 2026 · PMID 42321544
  not yet assessed
• InCytokine, an Open-Source Software, Reveals a TREM2 Variant-Specific Cytokine Signature ↗

  International Journal of Molecular Sciences · 2026 · PMID 41683566
  not yet assessed
• Abstract 1214: SPACE: Spatially resolved multiomic analysis for high-throughput CRISPR screening in 3D models. ↗

  Cancer Research · 2026
  not yet assessed
• OVO open-source ecosystem for de novo protein design - codebase 1.1.0 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• OVO open-source ecosystem for de novo protein design - codebase 1.1.0 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• SPACE: multimodal spatial CRISPR screening with whole-transcriptome readout at subcellular resolution in 3D models ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• InCytokine, an open-source software, reveals a TREM2 variant specific cytokine signature ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• mRNAid, an open-source platform for therapeutic mRNA design and optimization strategies ↗

  NAR Genomics and Bioinformatics · 2024 · PMID 38482061
  not yet assessed
• Communicating computational workflows in a regulatory environment ↗

  Drug Discovery Today · 2024 · PMID 38219969
  not yet assessed
• AnNoBrainer, an Automated Annotation of Mouse Brain Images using Deep Learning ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• AnNoBrainer, An Automated Annotation of Mouse Brain Images using Deep Learning ↗

  Neuroinformatics · 2024 · PMID 39107460
  not yet assessed
• A machine learning strategy for the identification of key in silico descriptors and prediction models for IgG monoclonal antibody developability properties ↗

  mAbs · 2023 · PMID 37610144
  not yet assessed
• TraceTrack, an open-source software for batch processing, alignment and visualization of sanger sequencing chromatograms ↗

  Bioinformatics Advances · 2023 · PMID 37456510
  not yet assessed
• Matcher: An Open-Source Application for Translating Large Structure/Property Data Sets into Insights for Drug Design ↗

  Journal of Chemical Information and Modeling · 2023 · PMID 36977316
  not yet assessed
• BioPhi: A platform for antibody design, humanization, and humanness evaluation based on natural antibody repertoires and deep learning ↗

  mAbs · 2022 · PMID 35133949
  not yet assessed
• PepSeA: Peptide Sequence Alignment and Visualization Tools to Enable Lead Optimization ↗

  Journal of Chemical Information and Modeling · 2022 · PMID 35192366
  not yet assessed
• mRNAid, an Open-Source Platform for Therapeutic mRNA Design and Optimization Strategies ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• TraceTrack, an Open-Source Software for Batch Processing, Alignment and Visualization of Sanger Sequencing Chromatograms ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Matcher: An Open-Source Application forTranslating Large Structure/Property Datasets intoInsights for Drug Design ↗

  ChemRxiv · 2022
  not yet assessed
• Mutation Maker, An Open Source Oligo Design Platform for Protein Engineering ↗

  ACS Synthetic Biology · 2021 · PMID 33433999
  not yet assessed
• BioPhi: A platform for antibody design, humanization and humanness evaluation based on natural antibody repertoires and deep learning ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• PepSeA: Peptide Sequence Alignment and Visualization Tools to Enable Lead Optimization ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• BioCompute Objects to communicate a viral detection pipeline with potential for use in a regulatory environment ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• OASis peptide database ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• OASis peptide database ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2021
  not yet assessed
• Data from Grech et al 2019 ↗

  Figshare · 2021
  not yet assessed
• The application potential of machine learning and genomics for understanding natural product diversity, chemistry, and therapeutic translatability ↗

  Natural Product Reports · 2020 · PMID 33245088
  not yet assessed
• Cdk9 and H2Bub1 signal to Clr6-CII/Rpd3S to suppress aberrant antisense transcription ↗

  Nucleic Acids Research · 2020 · PMID 32496538
  not yet assessed
• Mutation Maker, An Open Source Oligo Design Platform for Protein Engineering ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• A deep learning genome-mining strategy for biosynthetic gene cluster prediction ↗

  Nucleic Acids Research · 2019 · PMID 31400112
  not yet assessed
• Fitness Landscape of the Fission Yeast Genome ↗

  Molecular Biology and Evolution · 2019 · PMID 31077324
  not yet assessed
• Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast ↗

  RNA · 2018 · PMID 29914874
  not yet assessed
• A Deep Learning Genome-Mining Strategy Improves Biosynthetic Gene Cluster Prediction ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Fitness Landscape of the Fission Yeast Genome ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Long non-coding RNA repertoire and regulation by nuclear exosome, cytoplasmic exonuclease and RNAi in fission yeast ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Cdk9, Spt5 and histone H2B mono-ubiquitylation cooperate to ensure antisense suppression by the Clr6-CII/Rpd3S HDAC complex ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Functional and regulatory profiling of energy metabolism in fission yeast ↗

  Genome biology · 2016 · PMID 27887640
  not yet assessed
• Functional and Regulatory Profiling of Energy Metabolism in Fission Yeast ↗

  Preprints.org · 2016
  not yet assessed
• Additional file 1: of Functional and regulatory profiling of energy metabolism in fission yeast ↗

  Figshare · 2016
  not yet assessed
• Additional file 2: of Functional and regulatory profiling of energy metabolism in fission yeast ↗

  Figshare · 2016
  not yet assessed
• Additional file 2: of Functional and regulatory profiling of energy metabolism in fission yeast ↗

  Figshare · 2016
  not yet assessed
• The genomic and phenotypic diversity of Schizosaccharomyces pombe ↗

  Nature Genetics · 2015 · PMID 25665008
  not yet assessed
• AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast ↗

  Frontiers in Genetics · 2015 · PMID 26635866
  not yet assessed
• Identification of New Players in Cell Division, DNA Damage Response, and Morphogenesis Through Construction of Schizosaccharomyces pombe Deletion Strains ↗

  G3 Genes Genomes Genetics · 2015 · PMID 25552606
  not yet assessed
• Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast ↗

  Genome Research · 2015 · PMID 25883323
  not yet assessed
• Individual letters of the RNA polymerase II CTD code govern distinct gene expression programs in fission yeast ↗

  Proceedings of the National Academy of Sciences · 2014 · PMID 24591591
  not yet assessed
• Parallel Profiling of Fission Yeast Deletion Mutants for Proliferation and for Lifespan During Long-Term Quiescence ↗

  G3 Genes Genomes Genetics · 2014 · PMID 25452419
  not yet assessed
• A Novel Histone Deacetylase Complex in the Control of Transcription and Genome Stability ↗

  Molecular and Cellular Biology · 2014 · PMID 25002536
  not yet assessed
• LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq

  Genome Research · 2014 · PMID 24709818
  L1 68/100
• Skip and bin: pervasive alternative splicing triggers degradation by nuclear RNA surveillance in fission yeast ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2014
  not yet assessed
• Mzt1/Tam4, a fission yeast MOZART1 homologue, is an essential component of the γ-tubulin complex and directly interacts with GCP3Alp6 ↗

  Molecular Biology of the Cell · 2013 · PMID 24006493
  not yet assessed
• Structural and Functional Characterization of the N Terminus of Schizosaccharomyces pombe Cwf10 ↗

  Eukaryotic Cell · 2013 · PMID 24014766
  not yet assessed
• RAC2, AEP, and ICAM1 expression are associated with CNS disease in a mouse model of pre-B childhood acute lymphoblastic leukemia ↗

  Blood · 2011 · PMID 21606482
  not yet assessed
• Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe ↗

  Molecular Systems Biology · 2011 · PMID 22186733
  not yet assessed
• Augmented Annotation of the Schizosaccharomyces pombe Genome Reveals Additional Genes Required for Growth and Viability ↗

  Genetics · 2011 · PMID 21270388
  not yet assessed
• An Integrated Mass-Spectrometry Pipeline Identifies Novel Protein Coding-Regions in the Human Genome ↗

  PLoS ONE · 2010 · PMID 20126623
  not yet assessed
• Exon level integration of proteomics and microarray data ↗

  BMC Bioinformatics · 2008 · PMID 18298841
  not yet assessed
• Exon level integration of proteomics and microarray data ↗

  BMC Bioinformatics · 2008
  not yet assessed
• Eight-channel iTRAQ Enables Comparison of the Activity of Six Leukemogenic Tyrosine Kinases ↗

  Molecular & Cellular Proteomics · 2007 · PMID 17951628
  not yet assessed