Samuel Marguerat

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
  2014 L1 68/100

1 assessed by us (0 reproduced) · 115 not yet assessed — every PubMed paper on record, linked below.

• Denaturing purifications support direct interaction between PRC2 and RNA in cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2026
  not yet assessed
• Regulatory T cell depletion promotes myeloid cell activation and glioblastoma response to anti-PD1 and tumor-targeting antibodies ↗

  Immunity · 2025 · PMID 40280128
  not yet assessed
• Axonal injury is a targetable driver of glioblastoma progression ↗

  Nature · 2025 · PMID 40836081
  not yet assessed
• Detecting glioblastoma infiltration beyond conventional imaging tumour margins using MTE-NODDI ↗

  Imaging Neuroscience · 2025 · PMID 40800943
  not yet assessed
• Regulatory T cell depletion promotes myeloid cell activation and glioblastoma response to anti-PD1 and tumor-targeting antibodies ↗

  Immunity · 2025 · PMID 40446804
  not yet assessed
• OS05.3.A AXONAL INJURY IS A TARGETABLE DRIVER OF GLIOBLASTOMA PROGRESSION ↗

  Neuro-Oncology · 2025
  not yet assessed
• Ageing-associated long non-coding RNA extends lifespan and reduces translation in non-dividing cells ↗

  EMBO Reports · 2024 · PMID 39358553
  not yet assessed
• Aging-associated long non-coding RNA boosts longevity and reduces the ribosome content of non-dividing fission yeast cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024
  not yet assessed
• Glioblastoma cell fate is differentially regulated by the microenvironments of the tumor bulk and infiltrative margin ↗

  Cell Reports · 2023 · PMID 37149862
  not yet assessed
• Modelling capture efficiency of single-cell RNA-sequencing data improves inference of transcriptome-wide burst kinetics ↗

  Bioinformatics · 2023 · PMID 37354494
  not yet assessed
• Genetic effects on molecular network states explain complex traits ↗

  Molecular Systems Biology · 2023 · PMID 37485750
  not yet assessed
• Injury primes mutation-bearing astrocytes for dedifferentiation in later life ↗

  Current Biology · 2023 · PMID 36841240
  not yet assessed
• Diet suppresses glioblastoma initiation in mice by maintaining quiescence of mutation-bearing neural stem cells ↗

  Developmental Cell · 2023 · PMID 37084728
  not yet assessed
• Data-driven spatio-temporal modelling of glioblastoma ↗

  Royal Society Open Science · 2023 · PMID 36968241
  not yet assessed
• A coarse-grained resource allocation model of carbon and nitrogen metabolism in unicellular microbes ↗

  Journal of The Royal Society Interface · 2023 · PMID 37751876
  not yet assessed
• Fission yeast obeys a linear size law under nutrient titration ↗

  PubMed · 2023 · PMID 37193545
  not yet assessed
• Post-Transcriptional Size-Dependent Expression of the Fission Yeast Cdc13 Cyclin ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 41929151
  not yet assessed
• Modelling capture efficiency of single cell RNA-sequencing data improves inference of transcriptome-wide burst kinetics ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• A coarse-grained resource allocation model of carbon and nitrogen metabolism in unicellular microbes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Fission yeast obeys a linear size law under nutrient titration ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Cohesin couples transcriptional bursting probabilities of inducible enhancers and promoters ↗

  Nature Communications · 2022 · PMID 35896525
  not yet assessed
• Growth-rate-dependent and nutrient-specific gene expression resource allocation in fission yeast ↗

  Life Science Alliance · 2022 · PMID 35228260
  not yet assessed
• Author Correction: The white matter is a pro-differentiative niche for glioblastoma ↗

  Nature Communications · 2022 · PMID 35422055
  not yet assessed
• Correction: Functional profiling of long intergenic non-coding RNAs in fission yeast

  UCL Discovery (University College London) · 2022
  not yet assessed
• Large-scale changes of molecular network states explain complex traits ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Diet suppresses tumour initiation by maintaining quiescence of mutation-bearing neural stem cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Data-driven spatio-temporal modelling of glioblastoma ↗

  arXiv (Cornell University) · 2022
  not yet assessed
• Correction: Functional profiling of long intergenic non-coding RNAs in fission yeast ↗

  eLife · 2022 · PMID 35085068
  not yet assessed
• The white matter is a pro-differentiative niche for glioblastoma ↗

  Nature Communications · 2021 · PMID 33846316
  not yet assessed
• Functional profiling of long intergenic non-coding RNAs in fission yeast ↗

  eLife · 2021 · PMID 34984977
  not yet assessed
• R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements ↗

  PLoS Genetics · 2021 · PMID 34464389
  not yet assessed
• Growth-Rate Dependent And Nutrient-Specific Gene Expression Resource Allocation In Fission Yeast ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Functional profiling of long intergenic non-coding RNAs in fission yeast ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Author response: Functional profiling of long intergenic non-coding RNAs in fission yeast ↗

  2021
  not yet assessed
• Author Reply to Peer Reviews of Functional profiling of long intergenic non-coding RNAs in fission yeast ↗

  2021
  not yet assessed
• Author Reply to Peer Reviews of Growth-Rate Dependent And Nutrient-Specific Gene Expression Resource Allocation In Fission Yeast ↗

  2021
  not yet assessed
• Size-Dependent Increase in RNA Polymerase II Initiation Rates Mediates Gene Expression Scaling with Cell Size ↗

  Current Biology · 2020 · PMID 32059768
  not yet assessed
• A bacterial size law revealed by a coarse-grained model of cell physiology ↗

  PLoS Computational Biology · 2020 · PMID 32986690
  not yet assessed
• The white matter is a pro-differentiative microenvironment for glioblastoma ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data ↗

  Bioinformatics · 2019 · PMID 31584606
  not yet assessed
• Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation ↗

  Nature Microbiology · 2019 · PMID 30718845
  not yet assessed
• Size-dependent increase in RNA Polymerase II initiation rates mediates gene expression scaling with cell size ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast ↗

  RNA · 2018 · PMID 29914874
  not yet assessed
• Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits ↗

  Royal Society Open Science · 2018 · PMID 29657814
  not yet assessed
• Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription ↗

  eLife · 2018 · PMID 30230473
  not yet assessed
• bayNorm: Bayesian gene expression recovery, imputation and normalisation for single cell RNA-sequencing data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Single-cell phenotyping and RNA sequencing reveal novel patterns of gene expression heterogeneity and regulation during growth and stress adaptation in a unicellular eukaryote ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Supplementary material from "Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits" ↗

  Figshare · 2018
  not yet assessed
• Author response: Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription ↗

  2018
  not yet assessed
• The Wound Microenvironment Reprograms Schwann Cells to Invasive Mesenchymal-like Cells to Drive Peripheral Nerve Regeneration ↗

  Neuron · 2017 · PMID 28957681
  not yet assessed
• Size-Dependent Expression of the Mitotic Activator Cdc25 Suggests a Mechanism of Size Control in Fission Yeast ↗

  Current Biology · 2017 · PMID 28479325
  not yet assessed
• Editorial: Determinants of Cell Size ↗

  Frontiers in Cell and Developmental Biology · 2017 · PMID 29326932
  not yet assessed
• Long non-coding RNA repertoire and regulation by nuclear exosome, cytoplasmic exonuclease and RNAi in fission yeast ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Division rate, cell size and proteome allocation: impact on gene expression noise and implications for the dynamics of genetic circuits ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• The Nrd1-like protein Seb1 coordinates cotranscriptional 3′ end processing and polyadenylation site selection ↗

  Genes & Development · 2016 · PMID 27401558
  not yet assessed
• A bacterial size law revealed by a coarse-grained model of cell physiology ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2016
  not yet assessed
• Proportionality: A Valid Alternative to Correlation for Relative Data ↗

  PLoS Computational Biology · 2015 · PMID 25775355
  not yet assessed
• Connecting growth with gene expression: of noise and numbers ↗

  Current Opinion in Microbiology · 2015 · PMID 26093364
  not yet assessed
• Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry ↗

  Methods · 2015 · PMID 25952948
  not yet assessed
• Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast ↗

  Genome Research · 2015 · PMID 25883323
  not yet assessed
• The RNA exosome promotes transcription termination of backtracked RNA polymerase II ↗

  Nature Structural & Molecular Biology · 2014 · PMID 25240800
  not yet assessed
• Natural genetic variation impacts expression levels of coding, non‐coding, and antisense transcripts in fission yeast ↗

  Molecular Systems Biology · 2014 · PMID 25432776
  not yet assessed
• The DNA damage checkpoint pathway promotes extensive resection and nucleotide synthesis to facilitate homologous recombination repair and genome stability in fission yeast ↗

  Nucleic Acids Research · 2014 · PMID 24623809
  not yet assessed
• Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress ↗

  RNA Biology · 2014 · PMID 25007214
  not yet assessed
• LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq

  Genome Research · 2014 · PMID 24709818
  L1 68/100
• Proportionality: a valid alternative to correlation for relative data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2014
  not yet assessed
• Skip and bin: pervasive alternative splicing triggers degradation by nuclear RNA surveillance in fission yeast ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2014
  not yet assessed
• Spt6 Regulates Intragenic and Antisense Transcription, Nucleosome Positioning, and Histone Modifications Genome-Wide in Fission Yeast ↗

  Molecular and Cellular Biology · 2013 · PMID 24100010
  not yet assessed
• Genome-wide analysis of poly(A) site selection in Schizosaccharomyces pombe ↗

  RNA · 2013 · PMID 24152550
  not yet assessed
• Cell Cycle, Synchronization ↗

  2013
  not yet assessed
• Transcriptional Regulatory Network ↗

  2013
  not yet assessed
• DNA Microarrays ↗

  2013
  not yet assessed
• Cell Cycle Analysis, Expression Profiling ↗

  2013
  not yet assessed
• RNA-seq ↗

  2013
  not yet assessed
• Transcriptome ↗

  2013
  not yet assessed
• Cell Cycle-regulated Gene Expression ↗

  2013
  not yet assessed
• Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells ↗

  Cell · 2012 · PMID 23101633
  not yet assessed
• Coordinating genome expression with cell size ↗

  Trends in Genetics · 2012 · PMID 22863032
  not yet assessed
• Exploring long non-coding RNAs through sequencing ↗

  Seminars in Cell and Developmental Biology · 2011 · PMID 22202731
  not yet assessed
• A Pre-mRNA Degradation Pathway that Selectively Targets Intron-Containing Genes Requires the Nuclear Poly(A)-Binding Protein ↗

  Molecular Cell · 2011 · PMID 21981922
  not yet assessed
• Tra1 has specific regulatory roles, rather than global functions, within the SAGA co‐activator complex ↗

  The EMBO Journal · 2011 · PMID 21642955
  not yet assessed
• Spt6 Is Required for Heterochromatic Silencing in the Fission Yeast Schizosaccharomyces pombe ↗

  Molecular and Cellular Biology · 2011 · PMID 21844224
  not yet assessed
• Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast ↗

  Genome biology · 2011 · PMID 21859475
  not yet assessed
• Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions ↗

  Genes & Development · 2011 · PMID 21289066
  not yet assessed
• A Coordinated Global Control over Cellular Transcription ↗

  Current Biology · 2010 · PMID 20970341
  not yet assessed
• Defining transcribed regions using RNA-seq ↗

  Nature Protocols · 2010 · PMID 20134426
  not yet assessed
• Transcriptional Activation of the General Amino Acid Permease Gene per1 by the Histone Deacetylase Clr6 Is Regulated by Oca2 Kinase ↗

  Molecular and Cellular Biology · 2010 · PMID 20404084
  not yet assessed
• Faculty Opinions recommendation of Rates of in situ transcription and splicing in large human genes. ↗

  Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · 2010
  not yet assessed
• Faculty Opinions recommendation of Uniform transitions of the general RNA polymerase II transcription complex. ↗

  Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · 2010
  not yet assessed
• RNA-seq: from technology to biology ↗

  Cellular and Molecular Life Sciences · 2009 · PMID 19859660
  not yet assessed
• A simple method for directional transcriptome sequencing using Illumina technology ↗

  Nucleic Acids Research · 2009 · PMID 19815668
  not yet assessed
• The Fission Yeast Homeodomain Protein Yox1p Binds to MBF and Confines MBF-Dependent Cell-Cycle Transcription to G1-S via Negative Feedback ↗

  PLoS Genetics · 2009 · PMID 19714215
  not yet assessed
• Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast ↗

  The EMBO Journal · 2009 · PMID 19798055
  not yet assessed
• Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation (vol 9, pg 583, 2008)

  UCL Discovery (University College London) · 2009
  not yet assessed
• Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation ↗

  Nature Reviews Genetics · 2008 · PMID 18591982
  not yet assessed
• Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution ↗

  Nature · 2008 · PMID 18488015
  not yet assessed
• Next-generation sequencing: applications beyond genomes ↗

  Biochemical Society Transactions · 2008 · PMID 18793195
  not yet assessed
• Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast ↗

  Nature Structural & Molecular Biology · 2008 · PMID 18622392
  not yet assessed
• urg1: A Uracil-Regulatable Promoter System for Fission Yeast with Short Induction and Repression Times ↗

  PLoS ONE · 2008 · PMID 18197241
  not yet assessed
• The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8 ↗

  Genes & Development · 2008 · PMID 19056896
  not yet assessed
• Erratum: Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation ↗

  Nature Reviews Genetics · 2008
  not yet assessed
• A Network of Multiple Regulatory Layers Shapes Gene Expression in Fission Yeast ↗

  Molecular Cell · 2007 · PMID 17434133
  not yet assessed
• Shaken not stirred: a global research cocktail served in Hinxton ↗

  Genome biology · 2007 · PMID 18036269
  not yet assessed
• The more the merrier: comparative analysis of microarray studies on cell cycle‐regulated genes in fission yeast ↗

  Yeast · 2006 · PMID 16544289
  not yet assessed
• The fission yeast Rpb4 subunit of RNA polymerase II plays a specialized role in cell separation ↗

  Molecular Genetics and Genomics · 2006 · PMID 16972065
  not yet assessed
• Post-transcriptional control of gene expression: a genome-wide perspective ↗

  Trends in Biochemical Sciences · 2005 · PMID 16054366
  not yet assessed
• Negative thymocyte selection to HERV-K18 superantigens in humans ↗

  Blood · 2005 · PMID 15644416
  not yet assessed
• Transcriptional activation by bidirectional RNA polymerase II elongation over a silent promoter ↗

  EMBO Reports · 2005 · PMID 16113646
  not yet assessed
• Association of Human Endogenous Retrovirus K-18 Polymorphisms With Type 1 Diabetes ↗

  Diabetes · 2004 · PMID 14988274
  not yet assessed
• Interferon-α-Induced Endogenous Superantigen ↗

  Immunity · 2001 · PMID 11672541
  not yet assessed
• Protection from Radiation-Induced Colitis Requires MHC Class II Antigen Expression by Cells of Hemopoietic Origin ↗

  The Journal of Immunology · 1999 · PMID 10491007
  not yet assessed
• Thymic Lineage Commitment Rather Than Selection Causes Genetic Variations in Size of CD4 and CD8 Compartments ↗

  The Journal of Immunology · 1998 · PMID 9558064
  not yet assessed
• Homeostasis Limits the Development of Mature CD8+ But Not CD4+ Thymocytes ↗

  The Journal of Immunology · 1998 · PMID 9510173
  not yet assessed
• Quantitative Impact of Thymic Clonal Deletion on the T Cell Repertoire ↗

  The Journal of Experimental Medicine · 1997 · PMID 9053438
  not yet assessed