Padmini Ramachandran
Reproducibility track record
1
assessed papers
54/100
mean reproducibility
0
reproduced (C1–C2)
1
flagged
0
total citations
flag rate:
100%
(1/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 1
last author: 0
Topics
Funders
—
Frequent co-authors
Institutions
United States Food and Drug Administration 1Food and Drug Administration 1University of Maryland, College Park 1Center for Food Safety and Applied Nutrition 1
Geography (author institutions)
US 1TH 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (1)
Complete publication record (137)
Request a reproduction →1 assessed by us (0 reproduced) · 136 not yet assessed — every PubMed paper on record, linked below.
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Population structure analysis of Salmonella serovar Muenchen to redefine geno-serotyping using genome indexing approaches⚑Frontiers in Microbiology · 2026 · PMID 41743541L1 54/100 ⚑
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Targeted metagenomics enables species-level detection of arthropod contaminants in food ↗Food Control · 2026not yet assessed
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Pathogen to read: a rapid, automated workflow for public health-ready microbial sequencing ↗BMC Genomics · 2026 · PMID 42316014not yet assessed
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Enhancing thyroid disease prediction and comorbidity management through advanced machine learning frameworks ↗Clinical eHealth · 2025not yet assessed
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Bioinformatics combined with machine learning unravels differences among environmental, seafood, and clinical isolates of Vibrio parahaemolyticus ↗Frontiers in Microbiology · 2025 · PMID 40177478not yet assessed
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DNA data (genome skims and metabarcodes) paired with chemical data demonstrate utility for retrospective analysis of forage linked to fatal poisoning of cattle ↗Toxicon · 2025 · PMID 39921144not yet assessed
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Harnessing methods, data analysis, and near-real-time wastewater monitoring for enhanced public health response using high throughput sequencing ↗Environmental Research · 2025 · PMID 40254239not yet assessed
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DNA data (genome skims and metabarcodes) paired with chemical data demonstrate utility for retrospective analysis of forage linked to fatal poisoning of cattle ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025not yet assessed
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Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing ↗Microbiology Spectrum · 2024 · PMID 38687063not yet assessed
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SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA’s GenomeTrakr network ↗mSystems · 2024 · PMID 38819130not yet assessed
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Paired metagenomic and chemical evaluation of aflatoxin-contaminated dog kibble ↗Frontiers in Veterinary Science · 2024 · PMID 38665771not yet assessed
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SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA’s GenomeTrakr network ↗medRxiv · 2024not yet assessed
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Paired metagenomic and chemical evaluation of an aflatoxin contaminated dog kibble ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Oxford Nanopore long read-based shotgun metagenomic data sets of simulated bacterial communities originating from fresh spinach and surface water ↗Microbiology Resource Announcements · 2024 · PMID 39162465not yet assessed
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Harnessing Methods, Data Analysis, and Near-Real-Time Wastewater Monitoring for Enhanced Public Health Response Using High Throughput Sequencing ↗SSRN Electronic Journal · 2024not yet assessed
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Harnessing Methods, Data Analysis, and Near-Real-Time Wastewater Monitoring for Enhanced Public Health Response Using High Throughput Sequencing ↗SSRN Electronic Journal · 2024not yet assessed
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Harnessing Methods, Data Analysis, and Near-Real-Time Wastewater Monitoring for Enhanced Public Health Response Using High Throughput Sequencing ↗SSRN Electronic Journal · 2024not yet assessed
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Application of quasimetagenomics methods to define microbial diversity and subtype <i>Listeria monocytogenes</i> in dairy and seafood production facilities ↗Microbiology Spectrum · 2023 · PMID 37812012not yet assessed
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Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water ↗Frontiers in Microbiology · 2023 · PMID 37720160not yet assessed
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bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting ↗Frontiers in Microbiology · 2023 · PMID 37601366not yet assessed
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Metagenomic survey of antimicrobial resistance (AMR) in Maryland surface waters differentiated by high and low human impact ↗Microbiology Resource Announcements · 2023 · PMID 38032210not yet assessed
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Evaluation of universal preenrichment broth and comparison of rapid molecular methods for the detection of Salmonella from spent sprout irrigation water (SSIW) ↗International Journal of Food Microbiology · 2023 · PMID 38118357not yet assessed
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bettercallsal: better calling of <i>Salmonella</i> serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Metagenomic survey of antimicrobial resistance (AMR) in Maryland surface waters differentiated by high and low human impact ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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Variations in Bacterial Communities and Antibiotic Resistance Genes Across Diverse Recycled and Surface Water Irrigation Sources in the Mid-Atlantic and Southwest United States: A CONSERVE Two-Year Field Study ↗Environmental Science & Technology · 2022 · PMID 36194536not yet assessed
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Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods ↗PLOS Water · 2022not yet assessed
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Conventional tobacco products harbor unique and heterogenous microbiomes ↗Environmental Research · 2022 · PMID 36592812not yet assessed
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Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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taxaTarget: Fast, sensitive, and precise classification of microeukaryotes in metagenomic data ↗Research Square · 2022not yet assessed
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taxaTarget: Fast, sensitive, and precise classification of microeukaryotes in metagenomic data ↗Research Square · 2022not yet assessed
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Application of Quasimetagenomics Methods to Define Microbial Diversity and Subtype <i>Listeria monocytogenes</i> in Dairy and Seafood Production Facilities ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Correlation of Salmonella enterica and Listeria monocytogenes in Irrigation Water to Environmental Factors, Fecal Indicators, and Bacterial Communities ↗Frontiers in Microbiology · 2021 · PMID 33488530not yet assessed
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Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads ↗BMC Genomics · 2021 · PMID 34039264not yet assessed
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HPLC-UV, Metabarcoding and Genome Skims of Botanical Dietary Supplements: A Case Study in Echinacea ↗Planta Medica · 2021 · PMID 33445185not yet assessed
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain ↗PLoS ONE · 2021 · PMID 34735518not yet assessed
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Investigating the Distribution of Strains of <i>Erwinia amylovora</i> and Streptomycin Resistance in Apple Orchards in New York Using Clustered Regularly Interspaced Short Palindromic Repeat Profiles: A 6-Year Follow-Up ↗Plant Disease · 2021 · PMID 33599513not yet assessed
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Microbiomes of commercially-available pine nuts and sesame seeds ↗PLoS ONE · 2021 · PMID 34153055not yet assessed
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Endophytic Bacterial Communities in Apple Leaves Are Minimally Impacted by Streptomycin Use for Fire Blight Management ↗Phytobiomes Journal · 2021not yet assessed
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Metataxonomic Profiling of Native and Starter Microbiota During Ripening of Gouda Cheese Made With Listeria monocytogenes-Contaminated Unpasteurized Milk ↗Frontiers in Microbiology · 2021 · PMID 33776975not yet assessed
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Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth ↗Microbiology Resource Announcements · 2021 · PMID 33446581not yet assessed
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An Automatic Correlated Recursive Wrapper-Based Feature Selector (ACRWFS) for Efficient Classification of Network Intrusion Features ↗Lecture notes in networks and systems · 2021not yet assessed
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TaxaTarget: Fast, Sensitive, and Precise Classification of Microeukaryotes in Metagenomic Data ↗Research Square · 2021not yet assessed
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chainDOAJ (DOAJ: Directory of Open Access Journals) · 2021not yet assessed
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Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream ↗BMC Infectious Diseases · 2020 · PMID 31996135not yet assessed
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Metabolically-active bacteria in reclaimed water and ponds revealed using bromodeoxyuridine DNA labeling coupled with 16S rRNA and shotgun sequencing ↗Water Research · 2020 · PMID 32726735not yet assessed
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Taxonomic and Functional Shifts in the Sprout Spent Irrigation Water Microbiome in Response to <i>Salmonella</i> Contamination of Alfalfa Seeds ↗Applied and Environmental Microbiology · 2020 · PMID 33218999not yet assessed
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Using full chloroplast genomes of ‘red’ and ‘yellow’ Bixa orellana (achiote) for kmer based identification and phylogenetic inference ↗BMC Genomics · 2020 · PMID 32762642not yet assessed
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Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream ↗Research Square · 2020not yet assessed
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Full chloroplast genome assembly and phylogeny of “red and “yellow” Bixa orellana, “achiote”; popular source of food coloring and traditional medicine. ↗Research Square · 2020not yet assessed
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Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream ↗Research Square · 2020not yet assessed
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Additional file 1 of Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream ↗Figshare · 2020not yet assessed
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Microbiota of the Hickey Run Tributary of the Anacostia River ↗Microbiology Resource Announcements · 2019 · PMID 30938701not yet assessed
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Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions ↗BMC Genomics · 2019 · PMID 31195964not yet assessed
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Food Microbiomes: A New Paradigm for Food and Food Ecology ↗Food Microbiology · 2019not yet assessed
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Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream ↗Research Square · 2019not yet assessed
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Additional file 1: of Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions ↗Figshare · 2019not yet assessed
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Additional file 2: of Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions ↗Figshare · 2019not yet assessed
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Additional file 4: of Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions ↗Figshare · 2019not yet assessed
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Additional file 3: of Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions ↗Figshare · 2019not yet assessed
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Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing ↗BMC Microbiology · 2018 · PMID 30453904not yet assessed
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Shifts in spinach microbial communities after chlorine washing and storage at compliant and abusive temperatures ↗Food Microbiology · 2018 · PMID 29526229not yet assessed
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Microbiomes Associated With Foods From Plant and Animal Sources ↗Frontiers in Microbiology · 2018 · PMID 30405589not yet assessed
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Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, North Carolina and California ↗Food Microbiology · 2018 · PMID 30621868not yet assessed
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Exploring the Microbiome of Callinectes sapidus (Maryland Blue Crab) ↗Genome Announcements · 2018 · PMID 29853506not yet assessed
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Metagenomic Description of Preenrichment and Postenrichment of Recalled Chapati Atta Flour Using a Shotgun Sequencing Approach ↗Genome Announcements · 2018 · PMID 29798913not yet assessed
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MitochonTrakr: a reference collection of high-quality mitochondrial genomes for detecting insect species in food products ↗Mitochondrial DNA Part B · 2018not yet assessed
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Sequencing the Vine of the Soul: Full Chloroplast Genome Sequence of <i>Banisteriopsis caapi</i> ↗Genome Announcements · 2018 · PMID 29930028not yet assessed
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Characterization of the Microbiota of Oyster Larvae (Crassostrea virginica) and Tank Water from an Aquaculture System with High and Low Larval Survival Rates ↗Genome Announcements · 2018 · PMID 29930077not yet assessed
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Upper neighbours of Čech closure operators ↗Arabian Journal of Mathematics · 2018not yet assessed
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Genomics of foodborne pathogens for microbial food safety ↗Current Opinion in Biotechnology · 2017 · PMID 29169072not yet assessed
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Development of a Reference Standard Library of Chloroplast Genome Sequences, GenomeTrakrCP ↗Planta Medica · 2017 · PMID 28651291not yet assessed
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Reconstructing a herbivore’s diet using a novel rbcL DNA mini-barcode for plants ↗AoB Plants · 2017 · PMID 28533898not yet assessed
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An analysis of Echinacea chloroplast genomes: Implications for future botanical identification ↗Scientific Reports · 2017 · PMID 28303008not yet assessed
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Microbiomes of American Oysters ( <i>Crassostrea virginica</i> ) Harvested from Two Sites in the Chesapeake Bay ↗Genome Announcements · 2017 · PMID 28751404not yet assessed
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Enrichment Dynamics of Listeria monocytogenes and the Associated Microbiome from Naturally Contaminated Ice Cream Linked to a Listeriosis OutbreakIAFP 2017 · 2017not yet assessed
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Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak ↗BMC Microbiology · 2016 · PMID 27852235not yet assessed
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Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing ↗mSphere · 2016 · PMID 27303722not yet assessed
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Using a Control to Better Understand Phyllosphere Microbiota ↗PLoS ONE · 2016 · PMID 27669159not yet assessed
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ON $T$-REPRESENTABILITY OF THE CYCLIC SUBGROUPS OF THE SYMMETRIC GROUP-I ↗International Journal of Pure and Apllied Mathematics · 2016not yet assessed
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Group of closure isomorphisms of Cech closure spaces ↗Journal of Advanced Studies in Topology · 2016not yet assessed
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Development and utility of the FDA ‘GutProbe’ DNA microarray for identification, genotyping and metagenomic analysis of commercially available probiotics ↗Journal of Applied Microbiology · 2015 · PMID 25766767not yet assessed
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ADJACENCY IN THE LATTICE OF \u{C}ECH CLOSURE OPERATORS ↗International Journal of Pure and Apllied Mathematics · 2015not yet assessed
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Microbiological Enumeration of Dietary Supplements and the Creation of a Sequence Database for the Microbiota Found in Functional Foods2015 Annual Meeting (July 25 - 28, 2015) · 2015not yet assessed
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COMPLEMENTATION IN THE LATTICE OF ČECH CLOSURE OPERATORDOAJ (DOAJ: Directory of Open Access Journals) · 2015not yet assessed
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Early Detection and Prevention of Cancer using Data Mining Techniques ↗International Journal of Computer Applications · 2014not yet assessed
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Development of a Tiered Multilocus Sequence Typing Scheme for Members of the Lactobacillus acidophilus Complex ↗Applied and Environmental Microbiology · 2013 · PMID 24038697not yet assessed
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Is There Evidence of the New Variant Chlamydia trachomatis in the United States? ↗Sexually Transmitted Diseases · 2013 · PMID 23588122not yet assessed
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A broad range assay for rapid detection and etiologic characterization of bacterial meningitis: performance testing in samples from sub-Sahara ↗Diagnostic Microbiology and Infectious Disease · 2012 · PMID 22809694not yet assessed
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Rapid identification viruses from nasal pharyngeal aspirates in acute viral respiratory infections by RT-PCR and electrospray ionization mass spectrometry ↗Journal of Virological Methods · 2011 · PMID 21256867not yet assessed
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Reverse transcription polymerase chain reaction and electrospray ionization mass spectrometry for identifying acute viral upper respiratory tract infections ↗Diagnostic Microbiology and Infectious Disease · 2011 · PMID 21251562not yet assessed
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Rapid Identification of Bacterial Pathogens in Positive Blood Culture Bottles by Use of a Broad-Based PCR Assay Coupled with High-Resolution Melt Analysis ↗Journal of Clinical Microbiology · 2011not yet assessed
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Use of Quantitative Broad‐based Polymerase Chain Reaction for Detection and Identification of Common Bacterial Pathogens in Cerebrospinal Fluid ↗Academic Emergency Medicine · 2010 · PMID 20653589not yet assessed
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Rapid Identification of Bacterial Pathogens in Positive Blood Culture Bottles by Use of a Broad-Based PCR Assay Coupled with High-Resolution Melt Analysis ↗Journal of Clinical Microbiology · 2010 · PMID 20631110not yet assessed
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Rapid Identification of Biothreat and Other Clinically Relevant Bacterial Species by Use of Universal PCR Coupled with High-Resolution Melting Analysis ↗Journal of Clinical Microbiology · 2009 · PMID 19458181not yet assessed
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Rapid PCR-Based Diagnosis of Septic Arthritis by Early Gram-Type Classification and Pathogen Identification ↗Journal of Clinical Microbiology · 2008 · PMID 18305128not yet assessed
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Rapid Polymerase Chain Reaction‐based Screening Assay for Bacterial Biothreat Agents ↗Academic Emergency Medicine · 2008 · PMID 18370996not yet assessed
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An Approach in Artificial Neural Network in Predicting Power Load Forecasting For Short Term of Indian Electrical Utility ↗i-manager’s Journal on Future Engineering and Technology · 2007not yet assessed
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Use of Quantitative Broad-Based Polymerase Chain Reaction (PCR) for Detection and Identification of Common Bacterial Pathogens in Cerebrospinal Fluid (CSF) ↗Academic Emergency Medicine · 2007not yet assessed
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Groups of homeomorphisms and normal subgroups of the group of permutations ↗International Journal of Mathematics and Mathematical Sciences · 1991not yet assessed
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Life-history of Hepatozoon octosporei sp. n., a new haemogregarine from the skink, Mabuya carinata (Schneider), with notes on the in vitro excystment of its oocysts ↗Archiv für Protistenkunde · 1990not yet assessed
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Studies on Trypanosoma leschenaultiiRobertson, 1908 and its vector-phase development in the sandfly, Sergentomyia bailyi (Sinton) ↗Archiv für Protistenkunde · 1989not yet assessed
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Trypanoplasma ompoki sp. n. from freshwater fishes in Kerala, India, with observations on its vector-phase development and transmissionActa Protozoologica · 1989not yet assessed
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Observations on the Polysaccharides of Stenoductus carlogoni (Cephalina: Monoductidae) : a Cyto -Biochemical Analysis ↗Archiv für Protistenkunde · 1987not yet assessed
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Some Problems in Set Topology Relating Group of Homeomorphisms and OrderDyuthi Digital Repository (Cochin University of Science and Technology) · 1985not yet assessed
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Freshwater snail consumption and angiostrongyliasis in Malaya. ↗PubMed · 1978 · PMID 726037not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Ramachandran P” paper on PubMed ↗