John Platig

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.⚑
  2024 L1 23/100 ⚑

1 assessed by us (0 reproduced) · 93 not yet assessed — every PubMed paper on record, linked below.

• netZoo/netZooR: Petoskey ↗

  Open MIND · 2026
  not yet assessed
• netZoo/netZooR: 1.7.1 ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• The Importance of Regulatory Network Structure for Complex Trait Heritability and Evolution ↗

  Molecular Biology and Evolution · 2025 · PMID 40827705
  not yet assessed
• Polygenic and transcriptional risk scores identify chronic obstructive pulmonary disease subtypes in the COPDGene and ECLIPSE cohort studies ↗

  EBioMedicine · 2024 · PMID 39509750
  not yet assessed
• Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals⚑

  PLoS Computational Biology · 2024 · PMID 39418301
  L1 23/100 ⚑
• The Importance of Regulatory Network Structure for Complex Trait Heritability and Evolution ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 38464142
  not yet assessed
• Gene Targeting in Disease Networks ↗

  UNC Libraries · 2024
  not yet assessed
• Polygenic and Transcriptional Risk Scores Identify Chronic Obstructive Pulmonary Disease Subtypes ↗

  2024
  not yet assessed
• Polygenic and transcriptional risk scores identify chronic obstructive pulmonary disease subtypes ↗

  medRxiv · 2024 · PMID 38826461
  not yet assessed
• The adaptation of polygenic traits: from genes to phenotypes, are regulatory networks the missing link?

  HAL (Le Centre pour la Communication Scientifique Directe) · 2024
  not yet assessed
• Gene regulatory network structure help us understandhow polygenic phenotypes adapt

  HAL (Le Centre pour la Communication Scientifique Directe) · 2024
  not yet assessed
• The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks ↗

  Genome biology · 2023 · PMID 36894939
  not yet assessed
• Polygenic and transcriptional risk scores identify chronic obstructive pulmonary disease subtypes ↗

  2023
  not yet assessed
• An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks ↗

  Nature Methods · 2022 · PMID 35459940
  not yet assessed
• Connectivity in eQTL networks dictates reproducibility and genomic properties ↗

  Cell Reports Methods · 2022 · PMID 35637906
  not yet assessed
• Predicting genotype-specific gene regulatory networks ↗

  Genome Research · 2022 · PMID 35193937
  not yet assessed
• The Network Zoo: a multilingual package for the inference and analysis of biological networks ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Connectivity in eQTL networks dictates reproducibility and genomic properties ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2022
  not yet assessed
• Differentially Correlated Molecular Pathways with Hedgehog Interacting Protein in Human and Mouse Lungs ↗

  2022
  not yet assessed
• GRAND: a database of gene regulatory network models across human conditions ↗

  Nucleic Acids Research · 2021 · PMID 34508353
  not yet assessed
• Gene Targeting in Disease Networks ↗

  Frontiers in Genetics · 2021 · PMID 33968133
  not yet assessed
• Gene Regulatory Network Inference as Relaxed Graph Matching ↗

  Proceedings of the AAAI Conference on Artificial Intelligence · 2021
  not yet assessed
• Gene regulatory network inference as relaxed graph matching. ↗

  PubMed · 2021 · PMID 34707916
  not yet assessed
• Cigarette smoking-associated isoform switching and 3′ UTR lengthening via alternative polyadenylation ↗

  Genomics · 2021 · PMID 34763026
  not yet assessed
• Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease ↗

  PLoS Genetics · 2021 · PMID 34784346
  not yet assessed
• Multi-omic regulatory networks capture downstream effects of kinase inhibition in Mycobacterium tuberculosis ↗

  npj Systems Biology and Applications · 2021 · PMID 33514755
  not yet assessed
• GRAND: A database of gene regulatory network models across human conditions ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Predicting genotype-specific gene regulatory networks ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Cigarette Smoking-Associated Isoform Switching and 3’ UTR Lengthening Via Alternative Polyadenylation ↗

  medRxiv · 2021
  not yet assessed
• Gene targeting in disease networks ↗

  arXiv (Cornell University) · 2021
  not yet assessed
• Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues ↗

  Cell Reports · 2020 · PMID 32579922
  not yet assessed
• Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility ↗

  PLoS Pathogens · 2020 · PMID 32255801
  not yet assessed
• Gene Regulatory Network Inference as Relaxed Graph Matching ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function ↗

  British Journal of Cancer · 2019 · PMID 31806877
  not yet assessed
• Identification of an emphysema-associated genetic variant near TGFB2 with regulatory effects in lung fibroblasts ↗

  eLife · 2019 · PMID 31343404
  not yet assessed
• Connectivity of variants in eQTL networks dictates reproducibility and functionality ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Multi-omic regulatory networks capture downstream effects of kinase inhibition in <i>Mycobacterium tuberculosis</i> ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Author response: Identification of an emphysema-associated genetic variant near TGFB2 with regulatory effects in lung fibroblasts ↗

  2019
  not yet assessed
• Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface ↗

  mBio · 2018 · PMID 29511081
  not yet assessed
• Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease ↗

  Human Genomics · 2018 · PMID 29335020
  not yet assessed
• Histopathological Image QTL Discovery of Immune Infiltration Variants ↗

  iScience · 2018 · PMID 30240647
  not yet assessed
• Nongenic cancer-risk SNPs affect oncogenes, tumor suppressor genes, and immune function ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• Understanding Tissue-Specific Gene Regulation ↗

  Cell Reports · 2017 · PMID 29069589
  not yet assessed
• Exploring regulation in tissues with eQTL networks ↗

  Proceedings of the National Academy of Sciences · 2017 · PMID 28851834
  not yet assessed
• Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  BMC Bioinformatics · 2017 · PMID 28974199
  not yet assessed
• Regulatory network changes between cell lines and their tissues of origin ↗

  BMC Genomics · 2017 · PMID 28899340
  not yet assessed
• Understanding Tissue-specific Gene Regulation ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• Gene Regulatory Networks For 38 Human Tissues ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2017
  not yet assessed
• Topological Pathway Enrichment Analysis of Gene Expression in High Grade Serous Ovarian Cancer Reveals Tumor-Stoma Cross-Talk ↗

  Trends in mathematics · 2017
  not yet assessed
• Additional file 5: Table S1. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Gene Regulatory Networks For 38 Human Tissues ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2017
  not yet assessed
• Additional file 8: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 5: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 4: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 9: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 11: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: Figure S2. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 13: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: Figure S2. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: Figure S5. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 2: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 3: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: Figure S4. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 10: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 2: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 2: Figure S1. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 10: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 13: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 6: Figure S4. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 12: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 2: Figure S1. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 1: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Additional file 7: Figure S5. of Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  Figshare · 2017
  not yet assessed
• Additional file 12: of Regulatory network changes between cell lines and their tissues of origin ↗

  Figshare · 2017
  not yet assessed
• Bipartite Community Structure of eQTLs ↗

  PLoS Computational Biology · 2016 · PMID 27618581
  not yet assessed
• Thermodynamic measures of cancer: Gibbs free energy and entropy of protein–protein interactions ↗

  Journal of Biological Physics · 2016 · PMID 27012959
  not yet assessed
• Sexual dimorphism in gene expression and regulatory networks across human tissues ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2016
  not yet assessed
• Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2016
  not yet assessed
• A network-based approach to eQTL interpretation and SNP functional characterization ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2016
  not yet assessed
• Transcriptional landscape of cell lines and their tissues of origin ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2016
  not yet assessed
• NHGRI-GWAS SNPs have higher core scores than non-GWAS SNPs based on Wilcoxon test statistics. ↗

  Figshare · 2016
  not yet assessed
• Gibbs Free Energy of Protein-Protein Interactions reflects tumor stage ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2015
  not yet assessed
• Robustness of network measures to link errors ↗

  Physical Review E · 2013 · PMID 24483516
  not yet assessed
• Robustness of Network Measures to Link Errors ↗

  2013
  not yet assessed
• Making Predictions and Handling Errors in Reconstructed Biological Networks

  University Libraries (University of Maryland) · 2013
  not yet assessed
• Exploiting Synthetic Lethality for the Therapy of ABC Diffuse Large B Cell Lymphoma ↗

  Cancer Cell · 2012 · PMID 22698399
  not yet assessed