Shawn Levy

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Betacoronavirus-specific alternate splicing.
  2022 L1 100/100

1 assessed by us (1 reproduced) · 39 not yet assessed — every PubMed paper on record, linked below.

• A simplified hybrid capture approach retains high specificity and enables PCR-free workflow ↗

  BMC Genomics · 2025 · PMID 40898018
  not yet assessed
• Population-scale Long-read Sequencing in the All of Us Research Program ↗

  medRxiv · 2025 · PMID 41256123
  not yet assessed
• A simplified hybrid capture approach retains high specificity and enables PCR-free workflow ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Abstract 4080: A novel integrated target capture and rapid sequencing workflow for myeloid malignancy mutation detection within 12 hours ↗

  Cancer Research · 2025
  not yet assessed
• Abstract 1020: A cancer patient survival study facilitated by an integrated enrichment workflow streamlined DNA and RNA sequencing of biopsy samples ↗

  Cancer Research · 2025
  not yet assessed
• Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair ↗

  Scientific Data · 2025 · PMID 40781089
  not yet assessed
• The Space Omics and Medical Atlas (SOMA) and international astronaut biobank ↗

  Nature · 2024 · PMID 38862028
  not yet assessed
• ArCH: improving the performance of clonal hematopoiesis variant calling and interpretation ↗

  Bioinformatics · 2024 · PMID 38485690
  not yet assessed
• System-wide transcriptome damage and tissue identity loss in COVID-19 patients ↗

  Cell Reports Medicine · 2022 · PMID 35233546
  not yet assessed
• The Common Bean V Gene Encodes Flavonoid 3′5′ Hydroxylase: A Major Mutational Target for Flavonoid Diversity in Angiosperms ↗

  Frontiers in Plant Science · 2022 · PMID 35432409
  not yet assessed
• Betacoronavirus-specific alternate splicing

  Genomics · 2022 · PMID 35074468
  L1 100/100
• Origin and Dynamics of Mycobacterium tuberculosis Subpopulations That Predictably Generate Drug Tolerance and Resistance ↗

  mBio · 2022 · PMID 36346244
  not yet assessed
• Author Correction: Perspectives on ENCODE ↗

  Nature · 2022 · PMID 35474002
  not yet assessed
• Origin and dynamics of <i>Mycobacterium tuberculosis</i> subpopulations that predictably generate drug tolerance and resistance ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson’s disease ↗

  Nature Aging · 2021 · PMID 37117765
  not yet assessed
• A polygenic score for acute vaso-occlusive pain in pediatric sickle cell disease ↗

  Blood Advances · 2021 · PMID 34283174
  not yet assessed
• Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021 · PMID 33758858
  not yet assessed
• Betacoronavirus-specific alternate splicing ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021 · PMID 34230929
  not yet assessed
• Expanded encyclopaedias of DNA elements in the human and mouse genomes ↗

  Nature · 2020 · PMID 32728249
  not yet assessed
• The COVID-19 XPRIZE and the need for scalable, fast, and widespread testing ↗

  Nature Biotechnology · 2020 · PMID 32820257
  not yet assessed
• Differential Expression of miRNAs in Hypoxia (“HypoxamiRs”) in Three Canine High-Grade Glioma Cell Lines ↗

  Frontiers in Veterinary Science · 2020 · PMID 32258065
  not yet assessed
• Detection of drug resistant Mycobacterium tuberculosis by high-throughput sequencing of DNA isolated from acid fast bacilli smears ↗

  PLoS ONE · 2020 · PMID 32384098
  not yet assessed
• Description of bioinformatics pipeline. ↗

  Figshare · 2020
  not yet assessed
• Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020 · PMID 32511352
  not yet assessed
• Number and percent of smears with interpretable results for all target gene segments by stain type, overall and per smear grade. ↗

  Figshare · 2020
  not yet assessed
• Summary of non-drug resistance associated mutations detected in pncA gene of DNA isolated from direct AFB smears from Ghana, Kenya, Uganda, and Zambia. ↗

  Figshare · 2020
  not yet assessed
• Percent of scanty smears with interpretable results overall and per target gene segment (A) and median number of mapped reads per target gene segment for scanty smears (B). ↗

  Figshare · 2020
  not yet assessed
• Links to output generated by the ASAP pipeline. ↗

  Figshare · 2020
  not yet assessed
• Summary of drug resistance associated mutations detected in direct AFB smears by case status and drug type. ↗

  Figshare · 2020
  not yet assessed
• Precision Medicine for Sickle Cell Disease through Whole Genome Sequencing ↗

  Blood · 2018
  not yet assessed
• Comparative analysis of chimeric ZFP-, TALE- and Cas9-piggyBac transposases for integration into a single locus in human cells ↗

  Nucleic Acids Research · 2017 · PMID 28666380
  not yet assessed
• Narrow-sense heritability estimation of complex traits using identity-by-descent information ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2017
  not yet assessed
• In sickness and in health: context matters when considering potential benefits and risks of genome-wide sequencing ↗

  Genetics in Medicine · 2015 · PMID 26240975
  not yet assessed
• Overview of all substitutions and indels detected in the nine probands before and after variant reduction. ↗

  Figshare · 2015
  not yet assessed
• 344. Targeting piggyBac Transposition Into a User-Defined Chromosomal Locus in Human Cells ↗

  Molecular Therapy · 2015
  not yet assessed
• The genetic landscape of immune-competent and HIV lymphoma ↗

  Infectious Agents and Cancer · 2012 · PMID 22551362
  not yet assessed
• Exome sequencing and genetic testing for monogenic diabetes

  PLoS ONE · 2012
  not yet assessed
• ID3 Is a Novel Tumor Suppressor Gene in Burkitt Lymphom ↗

  Blood · 2012
  not yet assessed
• Identification of PLCL1 Gene for Hip Bone Size Variation in Females in a Genomewide Association Study

  UWA Profiles and Research Repository (University of Western Australia) · 2008
  not yet assessed
• Genomic organization and chromosomal localization of the TAPA-1 gene ↗

  The Journal of Immunology · 1991 · PMID 1650385
  not yet assessed