Zexi Cai

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance.⚑
  2024 L1 69/100 ⚑

1 assessed by us (0 reproduced) · 109 not yet assessed — every PubMed paper on record, linked below.

• Assessment of opportunities to switch to polled bulls in organic cattle production in relation to genetic issues

  2026
  not yet assessed
• The enhanced multi-tissue atlas of regulatory effects in cattle ↗

  Research Square · 2026
  not yet assessed
• Comparison of 16S rRNA Sequencing and Shotgun Metagenome Sequencing for Estimating Genotypic and Phenotypic Parameters of Enteric Methane Emission in Dairy Cattle ↗

  Journal of Dairy Science · 2026 · PMID 42114750
  not yet assessed
• Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs ↗

  National Science Review · 2025 · PMID 40330097
  not yet assessed
• A multi-tissue single-cell expression atlas in cattle ↗

  Nature Genetics · 2025 · PMID 40913183
  not yet assessed
• The crosstalk between host and rumen microbiome in cattle: insights from multi-omics approaches and genome-wide association studies ↗

  World Journal of Microbiology and Biotechnology · 2025 · PMID 40719778
  not yet assessed
• The genomic landscape of Hermetia illucens: exploring the potential of the black soldier fly through molecular insights ↗

  Journal of Insects as Food and Feed · 2025
  not yet assessed
• Comparative transcriptome analysis reveals genes associated with variation in liver copper concentration in Polish Merino sheep ↗

  Scientific Reports · 2025 · PMID 40467731
  not yet assessed
• Sequence-based genome-wide association study reveals host genomic regions and candidate genes influencing the fecal microbiota of Holstein cows ↗

  Journal of Dairy Science · 2025 · PMID 40383381
  not yet assessed
• Network analyses unraveled the complex interactions in the rumen microbiota associated with methane emission in dairy cattle ↗

  Animal Microbiome · 2025 · PMID 40069804
  not yet assessed
• Response of primary mammary epithelial cells to pathogen challenge in dairy cows with divergent genomic breeding values for udder health ↗

  Genomics · 2025 · PMID 40876796
  not yet assessed
• An atlas of cell type specific regulatory effects in cattle ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Human-Mediated Dispersal and Breeding Reshape Global Genomic Patterns in Black Soldier Flies ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025
  not yet assessed
• Genomic Insights into Young Stock Survival in Danish Jersey Cattle: A Breed-Specific Qtl on Chromosome 10 and its Regulatory Potential ↗

  SSRN Electronic Journal · 2025
  not yet assessed
• Response of Primary Mammary Epithelial Cells to Pathogen Challenge in Dairy Cows with Divergent Genomic Breeding Values for Udder Health ↗

  SSRN Electronic Journal · 2025
  not yet assessed
• An atlas of cell type specific regulatory effects in cattle ↗

  Research Square · 2025
  not yet assessed
• Informative title: Bayesian Modeling of Rumen Microbiota Composition Using Host Genomic Markers and Microbial Abundances ↗

  2025
  not yet assessed
• Genomic insights into young stock survival in Danish Jersey cattle: A breed-specific QTL on chromosome 10 and its regulatory potential ↗

  Genomics · 2025 · PMID 41077322
  not yet assessed
• Cumulative Marginal Mean Model for Assessing Sequential Effects Using Digital Health Data ↗

  ArXiv.org · 2025
  not yet assessed
• Referee report. For: The genome sequence of a soldierfly, Chorisops tibialis (Meigen, 1820) [version 1; peer review: 1 approved] ↗

  Faculty of 1000 Research Ltd · 2025
  not yet assessed
• A Haplotype Reference Panel and Genotype Imputation Framework for the Black Soldier Fly (Hermetia illucens) ↗

  SSRN Electronic Journal · 2025
  not yet assessed
• A compendium of genetic regulatory effects across pig tissues ↗

  Nature Genetics · 2024 · PMID 38177344
  not yet assessed
• Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance⚑

  Genetics Selection Evolution · 2024 · PMID 39009986
  L1 69/100 ⚑
• Whole-genome sequencing of two captive black soldier fly populations: Implications for commercial production ↗

  Genomics · 2024 · PMID 38909907
  not yet assessed
• A preliminary study on the effects of red Bonnemaisonia hamifera seaweed on methane emissions from dairy cows ↗

  JDS Communications · 2024 · PMID 40405999
  not yet assessed
• Cattle Cell Atlas: a multi-tissue single cell expression repository for advanced bovine genomics and comparative biology ↗

  Research Square · 2024
  not yet assessed
• Editorial: Application of genomics in livestock populations under selection or conservation ↗

  Frontiers in Genetics · 2024 · PMID 38327831
  not yet assessed
• Dynamic Classification of Latent Disease Progression with Auxiliary Surrogate Labels ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Network analyses unraveled complex interactions in the rumen microbiome associated with methane emission in cattle ↗

  Research Square · 2024
  not yet assessed
• MATES: Multi-view Aggregated Two-Sample Test ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Decoding the Genetic Dialogue::Rumen Microbiome and Host Genome Interaction in Enteric Methane Emission

  2024
  not yet assessed
• Host genes shape the lower gut microbiota of Holstein cows: evidence from sequence-based GWAS

  HAL (Le Centre pour la Communication Scientifique Directe) · 2024
  not yet assessed
• Incorporating prior biological information into genomic predictions: An example from mastitis in Danish Jersey and Nordic Red cattle

  2024
  not yet assessed
• Unraveling genetic diversity and population structure of black soldier fly (Hermetia illucens) in Kenya and Uganda

  2024
  not yet assessed
• Referee report. For: The genome sequence of the northern blowfly, Protophormia terraenovae (Robineau-Desvoidy, 1830) [version 1; peer review: 1 approved, 1 approved with reservations] ↗

  Faculty of 1000 Research Ltd · 2024
  not yet assessed
• Referee report. For: The genome sequence of a soliderfly, Stratiomys singularior (Harris, 1776) [version 1; peer review: 2 approved] ↗

  Faculty of 1000 Research Ltd · 2024
  not yet assessed
• Host genes shape the lower gut microbiota of Holstein cows: evidence from sequence-based GWAS

  2024
  not yet assessed
• Invited review: Good practices in genome-wide association studies to identify candidate sequence variants in dairy cattle ↗

  Journal of Dairy Science · 2023 · PMID 37349208
  not yet assessed
• Long-Term Simulation of Microgravity Induces Changes in Gene Expression in Breast Cancer Cells ↗

  International Journal of Molecular Sciences · 2023 · PMID 36674696
  not yet assessed
• Genome-wide association study identifies functional genomic variants associated with young stock survival in Nordic Red Dairy Cattle ↗

  Journal of Dairy Science · 2023 · PMID 37641238
  not yet assessed
• Gene coexpression network analysis reveals perirenal adipose tissue as an important target of prenatal malnutrition in sheep ↗

  Physiological Genomics · 2023 · PMID 37458462
  not yet assessed
• Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of complex traits in pig ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Additional file 1 of Application of mixed linear models for the estimation of functional effects on bovine stature based on SNP summary statistics from a whole-genome association study ↗

  Figshare · 2023
  not yet assessed
• Supplementary Table S3 ↗

  Figshare · 2023
  not yet assessed
• Supplementary Table S2 ↗

  Figshare · 2023
  not yet assessed
• Supplementary Table S1 ↗

  Figshare · 2023
  not yet assessed
• Large-scale association study on daily weight gain in pigs reveals overlap of genetic factors for growth in humans ↗

  BMC Genomics · 2022 · PMID 35168569
  not yet assessed
• Geographical contrasts of Y‐chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions ↗

  Molecular Ecology · 2022 · PMID 35751552
  not yet assessed
• A compendium of genetic regulatory effects across pig tissues ↗

  Research Square · 2022
  not yet assessed
• Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions ↗

  2022
  not yet assessed
• The application of mixed linear models for the estimation of functional effects on bovine stature based on SNP summary statistics from a whole-genome association study ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• 208. Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions ↗

  HAL (Le Centre pour la Communication Scientifique Directe) · 2022
  not yet assessed
• Application of mixed linear models for the estimation of functional effects on bovine stature based on SNP summary statistics from a whole-genome association study ↗

  Genetics Selection Evolution · 2022 · PMID 36526979
  not yet assessed
• 306. Genomic prediction with incomplete omics data ↗

  2022
  not yet assessed
• 541. Segregation of the structural variant responds for mastitis resistance in re-sequencing Nordic Holstein animals ↗

  2022
  not yet assessed
• 351. Quantitative trait simulation using MeSCoT software ↗

  2022
  not yet assessed
• 512. The application of mixed linear models for the estimation of functional effects on bovine stature based on SNP summary ↗

  2022
  not yet assessed
• 373. Fine-mapping young-stock survival QTL on chromosome 6 in Nordic Red Dairy Cattle ↗

  2022
  not yet assessed
• 208. Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions ↗

  2022
  not yet assessed
• 280. Accuracy of genomic prediction of dry matter intake in Dutch Holsteins using sequence variants from meta-analyses ↗

  2022
  not yet assessed
• Additional file 3 of Large-scale association study on daily weight gain in pigs reveals overlap of genetic factors for growth in humans ↗

  Open MIND · 2022
  not yet assessed
• Additional file 2 of Large-scale association study on daily weight gain in pigs reveals overlap of genetic factors for growth in humans ↗

  Figshare · 2022
  not yet assessed
• Pig genome functional annotation enhances the biological interpretation of complex traits and human disease ↗

  Nature Communications · 2021 · PMID 34615879
  not yet assessed
• Transcriptomics analysis of differentially expressed genes in subcutaneous and perirenal adipose tissue of sheep as affected by their pre- and early postnatal malnutrition histories ↗

  BMC Genomics · 2021 · PMID 33975549
  not yet assessed
• MeSCoT: the tool for quantitative trait simulation through the mechanistic modeling of genes’ regulatory interactions ↗

  G3 Genes Genomes Genetics · 2021 · PMID 33905502
  not yet assessed
• Pig genome functional annotation enhances biological interpretations of complex traits and comparative epigenomics ↗

  Research Square · 2021
  not yet assessed
• Referee report. For: The genome sequence of the common toad, Bufo bufo (Linnaeus, 1758) [version 1; peer review: 1 approved] ↗

  Faculty of 1000 Research Ltd · 2021
  not yet assessed
• Distinguishing pleiotropy from linked QTL between milk production traits and mastitis resistance in Nordic Holstein cattle ↗

  Genetics Selection Evolution · 2020 · PMID 32264818
  not yet assessed
• Genomic diversity revealed by whole-genome sequencing in three Danish commercial pig breeds ↗

  Journal of Animal Science · 2020 · PMID 32687196
  not yet assessed
• Inclusion of endophenotypes in a standard GWAS facilitate a detailed mechanistic understanding of genetic elements that control blood lipid levels ↗

  Scientific Reports · 2020 · PMID 33116219
  not yet assessed
• Integrated Karyotypes of Diploid and Tetraploid Carrizo Citrange (Citrus sinensis L. Osbeck × Poncirus trifoliata L. Raf.) as Determined by Sequential Multicolor Fluorescence in situ Hybridization With Tandemly Repeated DNA Sequences ↗

  Frontiers in Plant Science · 2020 · PMID 32536930
  not yet assessed
• Molecular evidence for adaptive evolution of olfactory-related genes in cervids ↗

  Genes & Genomics · 2020 · PMID 31902105
  not yet assessed
• Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis) ↗

  Vide Leaf, Hyderabad eBooks · 2020
  not yet assessed
• Chromosome-level genome assembly of Tarim red deer, Cervus elaphus yarkandensis ↗

  Scientific Data · 2020 · PMID 32561793
  not yet assessed
• Chromosome Y sequences ↗

  Figshare · 2020
  not yet assessed
• CEY_annotation ↗

  OPAL (Open@LaTrobe) (La Trobe University) · 2020
  not yet assessed
• Chromosome Y sequences ↗

  Figshare · 2020
  not yet assessed
• Prioritizing candidate genes for fertility in dairy cows using gene-based analysis, functional annotation and differential gene expression ↗

  BMC Genomics · 2019 · PMID 30935378
  not yet assessed
• Evolution and Domestication Footprints Uncovered from the Genomes of Coix ↗

  Molecular Plant · 2019 · PMID 31778842
  not yet assessed
• Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications ↗

  BMC Plant Biology · 2019 · PMID 30770721
  not yet assessed
• Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle ↗

  BMC Genetics · 2019 · PMID 30696404
  not yet assessed
• Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis) ↗

  BMC Genomics · 2019 · PMID 31357931
  not yet assessed
• Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle ↗

  Genetics Selection Evolution · 2019 · PMID 31077144
  not yet assessed
• Karyotype Analysis of Diploid and Spontaneously Occurring Tetraploid Blood Orange [Citrus sinensis (L.) Osbeck] Using Multicolor FISH With Repetitive DNA Sequences as Probes ↗

  Frontiers in Plant Science · 2019 · PMID 30967887
  not yet assessed
• Comparative karyotype analysis among six species of <i>Ipomoea</i> based on two newly identified repetitive sequences ↗

  Genome · 2019 · PMID 30785785
  not yet assessed
• ChIP-cloning analysis uncovers centromere-specific retrotransposons in Brassica nigra and reveals their rapid diversification in Brassica allotetraploids ↗

  Chromosoma · 2019 · PMID 30993455
  not yet assessed
• MOESM3 of Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle ↗

  Figshare · 2019
  not yet assessed
• Additional file 1: of Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications ↗

  Figshare · 2019
  not yet assessed
• Additional file 3: of Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis) ↗

  Figshare · 2019
  not yet assessed
• Additional file 4: of Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis) ↗

  Figshare · 2019
  not yet assessed
• Additional file 6: of Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications ↗

  Figshare · 2019
  not yet assessed
• Additional file 2: of Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis) ↗

  Figshare · 2019
  not yet assessed
• Additional file 4: of Molecular cytogenetic analysis of genome-specific repetitive elements in Citrus clementina Hort. Ex Tan. and its taxonomic implications ↗

  Figshare · 2019
  not yet assessed
• Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle ↗

  BMC Genomics · 2018 · PMID 30189836
  not yet assessed
• SNP markers associated with body size and pelt length in American mink (Neovison vison) ↗

  BMC Genetics · 2018 · PMID 30419805
  not yet assessed
• RETRACTED ARTICLE: Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle ↗

  BMC Genetics · 2018 · PMID 29751743
  not yet assessed
• Genomic selection in mink yield higher accuracies with a Bayesian approach allowing for heterogeneous variance than a GBLUP model.

  2018
  not yet assessed
• Retraction Note: Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle ↗

  BMC Genetics · 2018 · PMID 30537928
  not yet assessed
• Genomics using the Assembly of the Mink Genome

  2018
  not yet assessed
• Additional file 1: of Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle ↗

  Figshare · 2018
  not yet assessed
• Additional file 1: of SNP markers associated with body size and pelt length in American mink (Neovison vison) ↗

  Figshare · 2018
  not yet assessed
• The first draft reference genome of the American mink (Neovison vison) ↗

  Scientific Reports · 2017 · PMID 29109430
  not yet assessed
• Gener i kortlagte genområder påvirker størrelse, kvalitet og reproduktion

  2017
  not yet assessed
• Bayes AS and GBLUP models for genomic selection in mink

  2017
  not yet assessed
• Repetitive sequence analysis and karyotyping reveal different genome evolution and speciation of diploid and tetraploid Tripsacum dactyloides ↗

  The Crop Journal · 2016
  not yet assessed
• The draft genome sequence of the American mink (<i>Neovison vison</i>) opens new opportunities of genomic research in mink

  2016
  not yet assessed
• Repetitive sequence analysis and karyotyping reveals centromere-associated DNA sequences in radish (Raphanus sativus L.) ↗

  BMC Plant Biology · 2015 · PMID 25928652
  not yet assessed
• Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotyping ↗

  BMC Genomics · 2014 · PMID 25425126
  not yet assessed
• Research Advances in Coix L. Biology

  2013
  not yet assessed
• Organization, function and genetic controlling of synaptonemal complex ↗

  Hereditas (Beijing) · 2012 · PMID 22382058
  not yet assessed