Ola Wallerman

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• Nucleosome regulatory dynamics in response to TGFβ.
  2014 L1 59/100

1 assessed by us (0 reproduced) · 92 not yet assessed — every PubMed paper on record, linked below.

• Vocal learning–associated convergent evolution in mammalian proteins and regulatory elements ↗

  Science · 2024 · PMID 38422184
  not yet assessed
• Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins ↗

  Nature Communications · 2024 · PMID 39090106
  not yet assessed
• High-Quality Genome Assemblies of 4 Members of the <i>Podospora anserina</i> Species Complex ↗

  Genome Biology and Evolution · 2024 · PMID 38386982
  not yet assessed
• Evolutionary constraint and innovation across hundreds of placental mammals ↗

  Science · 2023 · PMID 37104599
  not yet assessed
• Integrating gene annotation with orthology inference at scale ↗

  Science · 2023 · PMID 37104600
  not yet assessed
• A genomic timescale for placental mammal evolution ↗

  Science · 2023 · PMID 37104581
  not yet assessed
• Insights into mammalian TE diversity through the curation of 248 genome assemblies ↗

  Science · 2023 · PMID 37104570
  not yet assessed
• Mammalian evolution of human cis-regulatory elements and transcription factor binding sites ↗

  Science · 2023 · PMID 37104580
  not yet assessed
• Three-dimensional genome rewiring in loci with human accelerated regions ↗

  Science · 2023 · PMID 37104607
  not yet assessed
• The contribution of historical processes to contemporary extinction risk in placental mammals ↗

  Science · 2023 · PMID 37104572
  not yet assessed
• Relating enhancer genetic variation across mammals to complex phenotypes using machine learning ↗

  Science · 2023 · PMID 37104615
  not yet assessed
• The functional and evolutionary impacts of human-specific deletions in conserved elements ↗

  Science · 2023 · PMID 37104592
  not yet assessed
• Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia ↗

  Molecular Biology and Evolution · 2023 · PMID 37071810
  not yet assessed
• Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ↗

  Science · 2023 · PMID 37104591
  not yet assessed
• Using evolutionary constraint to define novel candidate driver genes in medulloblastoma ↗

  Proceedings of the National Academy of Sciences · 2023 · PMID 37549291
  not yet assessed
• Evolutionary constraint and innovation across hundreds of placental mammals ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 36945512
  not yet assessed
• High-quality genome assemblies of four members of the <i>Podospora anserina</i> species complex ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023
  not yet assessed
• Leveraging base-pair mammalian constraint to understand genetic variation and human disease ↗

  Science · 2023 · PMID 37104612
  not yet assessed
• Rapid adaptive radiation of Darwin’s finches depends on ancestral genetic modules ↗

  Science Advances · 2022 · PMID 35857449
  not yet assessed
• Evolution of the ancestral mammalian karyotype and syntenic regions ↗

  Proceedings of the National Academy of Sciences · 2022 · PMID 36161960
  not yet assessed
• Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut ↗

  PLoS Genetics · 2022 · PMID 35134055
  not yet assessed
• Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis ↗

  Communications Biology · 2022 · PMID 36482174
  not yet assessed
• A novel canine reference genome resolves genomic architecture and uncovers transcript complexity ↗

  Communications Biology · 2021 · PMID 33568770
  not yet assessed
• Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics ↗

  Molecular Biology and Evolution · 2021 · PMID 33823537
  not yet assessed
• Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring ↗

  Communications Biology · 2021 · PMID 34172814
  not yet assessed
• A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component ↗

  Molecular Ecology · 2021 · PMID 34837435
  not yet assessed
• The <i>Enterprise</i> , a massive transposon carrying <i>Spok</i> meiotic drive genes ↗

  Genome Research · 2021 · PMID 33875482
  not yet assessed
• Darwin’s finches - an adaptive radiation constructed from ancestral genetic modules ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Genome sequencing and morphometric analysis of alpine bumblebees experiencing climate change reveal ongoing phenotypic shifts and a lack of population structure

  2021
  not yet assessed
• A genomic and morphometric analysis of alpine bumblebees: ongoing reductions in tongue length but no clear genetic component ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms ↗

  Science · 2020 · PMID 33060197
  not yet assessed
• Reconstruction of the birth of a male sex chromosome present in Atlantic herring ↗

  Proceedings of the National Academy of Sciences · 2020 · PMID 32938798
  not yet assessed
• The Human Adenovirus 2 Transcriptome: an Amazing Complexity of Alternatively Spliced mRNAs ↗

  Journal of Virology · 2020 · PMID 33239457
  not yet assessed
• The <i>Enterprise</i> : A massive transposon carrying <i>Spok</i> meiotic drive genes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• A new long-read dog assembly uncovers thousands of exons and functional elements missing in the previous reference ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• GSD_1.0 (canFam4): A novel canine reference genome resolves genomic architecture and uncovers transcript complexity ↗

  Research Square · 2020
  not yet assessed
• Heterochiasmy facilitated the establishment of <i>gsdf</i> as a novel sex determining gene in Atlantic halibut ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2020
  not yet assessed
• The evolution of the allorecognition gene repertoire in the Podospora anserina species complex

  2020
  not yet assessed
• Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard ↗

  Proceedings of the National Academy of Sciences · 2019 · PMID 30819892
  not yet assessed
• Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases ↗

  Scientific Reports · 2019 · PMID 30804403
  not yet assessed
• Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades ↗

  Current Biology · 2019 · PMID 31402298
  not yet assessed
• A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection ↗

  Genome Research · 2019 · PMID 31649060
  not yet assessed
• A chromosome-level assembly of the Atlantic herring – detection of a supergene and other signals of selection ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2019
  not yet assessed
• Chromosomal inversions associated with environmental adaptation in honeybees ↗

  Molecular Ecology · 2018 · PMID 30431193
  not yet assessed
• ZBED6 negatively regulates insulin production, neuronal differentiation, and cell aggregation in MIN6 cells ↗

  The FASEB Journal · 2018 · PMID 29957057
  not yet assessed
• Regulatory Changes in Pterin and Carotenoid Genes Underlie Balanced Color Polymorphisms in the Wall Lizard ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2018
  not yet assessed
• MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry ↗

  F1000Research · 2017 · PMID 28794860
  not yet assessed
• Tryptase-catalyzed core histone truncation: A novel epigenetic regulatory mechanism in mast cells ↗

  Journal of Allergy and Clinical Immunology · 2017 · PMID 28108335
  not yet assessed
• Regulatory Variants Other Than VKORC1 rs9923231 May Explain The Effect on Warfarin Dose ↗

  Clinical Therapeutics · 2017
  not yet assessed
• Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression ↗

  Human Genetics · 2016 · PMID 26993500
  not yet assessed
• Genetic prevention of hepatitis C virus‐induced liver fibrosis by allele‐specific downregulation of <i>MERTK</i> ↗

  Hepatology Research · 2016 · PMID 27577861
  not yet assessed
• Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals ↗

  Genomics · 2016 · PMID 27126307
  not yet assessed
• Knock-down of ZBED6 in insulin-producing cells promotes N-cadherin junctions between beta-cells and neural crest stem cells in vitro ↗

  Scientific Reports · 2016 · PMID 26750727
  not yet assessed
• ZBED6 negatively regulates insulin content, glucose-stimulated insulin secretion, neuronal differentiation and cell aggregation in MIN6 cells

  Diabetologia · 2016
  not yet assessed
• Transcriptional modulator <i>ZBED6</i> affects cell cycle and growth of human colorectal cancer cells ↗

  Proceedings of the National Academy of Sciences · 2015 · PMID 26056301
  not yet assessed
• lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Epigenetics & Chromatin · 2015 · PMID 26195988
  not yet assessed
• Current status of nanopore sequencing using the MinION device – from full length cDNA sequencing to genome assembly improvements ↗

  EMBnet journal · 2015
  not yet assessed
• Additional file 2. of lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Figshare · 2015
  not yet assessed
• Additional file 3. of lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Figshare · 2015
  not yet assessed
• Additional file 3. of lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Figshare · 2015
  not yet assessed
• Additional file 4. of lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Figshare · 2015
  not yet assessed
• Additional file 4. of lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Figshare · 2015
  not yet assessed
• Additional file 1. of lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Figshare · 2015
  not yet assessed
• Additional file 1. of lobChIP: from cells to sequencing ready ChIP libraries in a single day ↗

  Figshare · 2015
  not yet assessed
• ZBED6 Modulates the Transcription of Myogenic Genes in Mouse Myoblast Cells ↗

  PLoS ONE · 2014 · PMID 24714595
  not yet assessed
• Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells ↗

  Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · 2014 · PMID 25111868
  not yet assessed
• Nucleosome regulatory dynamics in response to TGF 

  Nucleic Acids Research · 2014 · PMID 24771338
  L1 59/100
• The transcriptional modulator ZBED6 regulates cell cycle and growth of human colorectal cancer cells

  2014
  not yet assessed
• Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells ↗

  Proceedings of the National Academy of Sciences · 2013 · PMID 24043816
  not yet assessed
• ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer ↗

  BMC Medical Genomics · 2013 · PMID 24206787
  not yet assessed
• Integration of genome-wide of Stat3 binding and epigenetic modifications with transcriptome allowed identification of novel Stat3 target genes in glioma cells

  2013
  not yet assessed
• The role of ZBED6 in transcriptional regulation studied by transcriptome analysis after RNAi in mouse myoblasts

  2012
  not yet assessed
• Stable silencing of ZBED6 affects morphology, gene expression and insulin release in insulin-producing islet cells

  2012
  not yet assessed
• Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa ↗

  BMC Cancer · 2011 · PMID 22011431
  not yet assessed
• Nucleosome landscape in HepG2 cells in relation to NFY, HNF4a and FOXA2 binding sites

  2010
  not yet assessed
• Strand-based mixture modeling of nucleosome positioning in HepG2 cells and their regulatory dynamics in response to TGF-beta treatment

  2010
  not yet assessed
• Genome-Wide Studies of Transcriptional Regulation in Mammalian Cells

  Uppsala University Publications (Uppsala University) · 2010
  not yet assessed
• Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing ↗

  Nucleic Acids Research · 2009 · PMID 19822575
  not yet assessed
• Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq ↗

  Genome biology · 2009 · PMID 19919681
  not yet assessed
• ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth ↗

  PLoS Biology · 2009 · PMID 20016685
  not yet assessed
• Influence of adenosine triphosphate and ABCB1 (MDR1) genotype on the P-glycoprotein-dependent transfer of saquinavir in the dually perfused human placenta ↗

  Human & Experimental Toxicology · 2008 · PMID 18480151
  not yet assessed
• Transcription response in the TGF-beta

  2008
  not yet assessed
• Genome-wide localization of hepatocytic nuclear factors HNF4α, FOXA2 and GABPα reveals many distal regulatory elements and bindings at novel TSSs.

  2008
  not yet assessed
• Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ↗

  Nature · 2007 · PMID 17571346
  not yet assessed
• Common Sequence Variants in the <i>LOXL1</i> Gene Confer Susceptibility to Exfoliation Glaucoma ↗

  Science · 2007 · PMID 17690259
  not yet assessed
• Placental transfer of quetiapine in relation to P-glycoprotein activity ↗

  Journal of Psychopharmacology · 2007 · PMID 17259208
  not yet assessed
• Common VKORC1 and GGCX polymorphisms associated with warfarin dose ↗

  The Pharmacogenomics Journal · 2005 · PMID 15883587
  not yet assessed
• Functional role of P-glycoprotein in the human blood-placental barrier ↗

  Clinical Pharmacology & Therapeutics · 2005 · PMID 16084847
  not yet assessed
• Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays ↗

  Human Molecular Genetics · 2005 · PMID 16221759
  not yet assessed
• Warfarin sensitivity related to CYP2C9, CYP3A5, ABCB1 (MDR1) and other factors ↗

  The Pharmacogenomics Journal · 2003 · PMID 14676821
  not yet assessed
• Evidence for a second gene for primary microcephaly at MCPH5 on chromosome 1 ↗

  Hereditas · 2003 · PMID 14641475
  not yet assessed