Robin Andersson
Reproducibility track record
1
assessed papers
59/100
mean reproducibility
0
reproduced (C1–C2)
0
flagged
0
total citations
flag rate:
0%
(0/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 0
Topics
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Funders
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Frequent co-authors
Madhusudhan Bysani 1Brian B. Tuch 1Jan Komorowski 1Stefan Enroth 1Claes Wadelius 1Ola Wallerman 1Aristidis Moustakas 1Carl‐Henrik Heldin 1Stefan Termén 1Francisco M. De La Vega 1
Institutions
Uppsala University 1Science for Life Laboratory 1Ludwig Cancer Research 1Life Systems (United States) 1Royal Swedish Academy of Sciences 1Polish Academy of Sciences 1
Geography (author institutions)
SE 1US 1BE 1PL 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.
Assessed papers (1)
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Nucleosome regulatory dynamics in response to TGFβ.
2014 L1 59/100
Complete publication record (172)
Request a reproduction →1 assessed by us (0 reproduced) · 171 not yet assessed — every PubMed paper on record, linked below.
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Mapping enhancer–gene regulatory interactions from single-cell data ↗Nature Genetics · 2026 · PMID 39605382not yet assessed
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PRIME atlas of transcription initiation-derived gene regulatory elements in human cells ↗Zenodo (CERN European Organization for Nuclear Research) · 2026not yet assessed
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Time-resolved inference of gene regulatory networks underlying human cranial neural crest development suggests novel risk genes for orofacial clefting ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Mapping active cis-regulatory elements from transcription initiation events ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026not yet assessed
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Abstract Or139: Single cell variant to enhancer to gene map for coronary artery disease ↗Arteriosclerosis Thrombosis and Vascular Biology · 2025not yet assessed
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Genome-wide rules of transcription factor cooperativity revealed through <i>in silico</i> binding site ablation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 40667078not yet assessed
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MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch ↗Nature Genetics · 2024 · PMID 38454021not yet assessed
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Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance ↗Cell Reports · 2024 · PMID 38944837not yet assessed
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Single cell variant to enhancer to gene map for coronary artery disease ↗medRxiv · 2024 · PMID 39606421not yet assessed
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Molecular convergence of risk variants for congenital heart defects leveraging a regulatory map of the human fetal heart ↗medRxiv · 2024 · PMID 39606363not yet assessed
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Publisher Correction: MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch ↗Nature Genetics · 2024not yet assessed
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Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity ↗Nature Genetics · 2023 · PMID 37666988not yet assessed
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Transcription factor expression is the main determinant of variability in gene co‐activity ↗Molecular Systems Biology · 2023 · PMID 37158788not yet assessed
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Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain ↗Frontiers in Aging Neuroscience · 2023 · PMID 37358952not yet assessed
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Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance in a p53-dependent manner ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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MYC enhancer invasion promotes prognostic cancer type-specific gene programs through an epigenetic switch ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023not yet assessed
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MYC enhancer invasion promotes prognostic cancer type-specific gene programs through an epigenetic switch ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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MYC enhancer invasion promotes prognostic cancer type-specific gene programs through an epigenetic switch ↗Zenodo (CERN European Organization for Nuclear Research) · 2023not yet assessed
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Current challenges in understanding the role of enhancers in disease ↗Nature Structural & Molecular Biology · 2022 · PMID 36482255not yet assessed
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Promoter sequence and architecture determine expression variability and confer robustness to genetic variants ↗eLife · 2022 · PMID 36377861not yet assessed
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Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells ↗Nucleic Acids Research · 2022 · PMID 35166831not yet assessed
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Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility ↗NAR Genomics and Bioinformatics · 2022 · PMID 37007588not yet assessed
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Methods for fighting emerging pathogens ↗Nature Methods · 2022 · PMID 35396474not yet assessed
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Scalable Artificial Intelligence for Earth Observation Data Using Hopsworks ↗Remote Sensing · 2022not yet assessed
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Transcription factor expression is the main determinant of variability in gene co-activity ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Transcription factor expression is the main determinant of variability in gene co-activity ↗Zenodo (CERN European Organization for Nuclear Research) · 2022not yet assessed
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Transfer learning identifies sequence determinants of regulatory element accessibility ↗bioRxiv (Cold Spring Harbor Laboratory) · 2022not yet assessed
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Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network ↗Nature Communications · 2022 · PMID 35232988not yet assessed
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Transcription factor expression is the main determinant of variability in gene co-activity ↗Zenodo (CERN European Organization for Nuclear Research) · 2022not yet assessed
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Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2 ↗eLife · 2021 · PMID 34591015not yet assessed
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The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation ↗eLife · 2021 · PMID 34591013not yet assessed
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Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq ↗Nature Protocols · 2021 · PMID 34363071not yet assessed
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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network ↗Nature Communications · 2021 · PMID 34078885not yet assessed
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hyperTRIBER: a flexible R package for the analysis of differential RNA editing ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Promoter sequence and architecture determine expression variability and confer robustness to genetic variants ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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The Arabidopsis m <sup>6</sup> A-binding proteins ECT2 and ECT3 bind largely overlapping mRNA target sets and influence target mRNA abundance, not alternative polyadenylation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Från ceremoni till trauma : en mediehistorisk studie av luftskeppet Hindenburg som en uppblåst mediehändelseLund University Publications Student Papers (Lund University) · 2021not yet assessed
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The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1 ↗Frontiers in Cell and Developmental Biology · 2020 · PMID 32719792not yet assessed
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Time Travel and Provenance for Machine Learning Pipelines.2020not yet assessed
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Comparative transcriptomics of primary cells in vertebrates ↗Genome Research · 2020 · PMID 32718981not yet assessed
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An atlas of active enhancers across human cell types and tissues ↗UNC Libraries · 2020not yet assessed
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Determinants of enhancer and promoter activities of regulatory elements ↗Nature Reviews Genetics · 2019 · PMID 31605096not yet assessed
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CAGEfightR: analysis of 5′-end data using R/Bioconductor ↗BMC Bioinformatics · 2019 · PMID 31585526not yet assessed
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PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells ↗eLife · 2019 · PMID 30672466not yet assessed
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Fritidsengelskan i ett Affinitetsutrymme -En text- och genreanalys av minecraftforums.netÖrebro University Library (Örebro University) · 2019not yet assessed
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Jämförande analys av kopplingen mellan projektering och produktionMalmö University Publications (Malmö University) · 2019not yet assessed
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MCM2 promotes symmetric inheritance of modified histones during DNA replication ↗Science · 2018 · PMID 30115746not yet assessed
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Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes ↗Nature Genetics · 2018 · PMID 29311636not yet assessed
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Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies ↗Nature Communications · 2018 · PMID 29695774not yet assessed
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The RNA exosome contributes to gene expression regulation during stem cell differentiation ↗Nucleic Acids Research · 2018 · PMID 30212902not yet assessed
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Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions ↗Nature Communications · 2018 · PMID 29402885not yet assessed
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Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities ↗Nucleic Acids Research · 2018 · PMID 29659982not yet assessed
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Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease ↗PLoS Computational Biology · 2018 · PMID 29494619not yet assessed
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CAGEfightR: Cap Analysis of Gene Expression (CAGE) in R/Bioconductor ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
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The GBAF chromatin remodeling complex binds H3K27ac and mediates enhancer transcription ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
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Fantom5 Transcribed Enhancers In Mm10 ↗Zenodo (CERN European Organization for Nuclear Research) · 2018not yet assessed
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Fantom5 Transcribed Enhancers In Mm10 ↗Zenodo (CERN European Organization for Nuclear Research) · 2018not yet assessed
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Gävunda case study2018not yet assessed
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Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure <i>in Vivo</i> ↗ACS Nano · 2017 · PMID 28345861not yet assessed
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Transcription start site analysis reveals widespread divergent transcription in <i>D. melanogaster</i> and core promoter-encoded enhancer activities ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
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Fantom5 Transcribed Enhancers In Hg38 ↗Zenodo (CERN European Organization for Nuclear Research) · 2017not yet assessed
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Transcriptional decomposition reveals active chromatin architectures and cell specific regulatory interactions ↗bioRxiv (Cold Spring Harbor Laboratory) · 2017not yet assessed
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Sparse representation and image classification with the shearlet transformChalmers Publication Library (Chalmers University of Technology) · 2017not yet assessed
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Transcriptional Decomposition Reveals Active Chromatin Architectures And Cell Specific Regulatory Interactions ↗Zenodo (CERN European Organization for Nuclear Research) · 2017not yet assessed
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Comparison Between Particle Rendering Techniques in DirectX 11Malmö University Publications (Malmö University) · 2017not yet assessed
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Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals ↗Nucleic Acids Research · 2016 · PMID 27794045not yet assessed
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Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters ↗Nature Genetics · 2016 · PMID 27455346not yet assessed
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Human genome meeting 2016 ↗Human Genomics · 2016 · PMID 27294413not yet assessed
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Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution ↗Diabetes · 2016 · PMID 27803022not yet assessed
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On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase ↗Database · 2016 · PMID 28025337not yet assessed
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Regulating retrotransposon activity through the use of alternative transcription start sites ↗EMBO Reports · 2016 · PMID 26902262not yet assessed
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Histone acetylation of glucose-induced thioredoxin-interacting protein gene expression in pancreatic islets ↗The International Journal of Biochemistry & Cell Biology · 2016 · PMID 27989964not yet assessed
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Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
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Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters ↗bioRxiv (Cold Spring Harbor Laboratory) · 2016not yet assessed
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Abstract 2897: Recurrent transcriptome alterations across multiple cancer types ↗Cancer Research · 2016not yet assessed
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Varning för fallgropar i kamp mot extremism2016not yet assessed
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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells ↗Science · 2015 · PMID 25678556not yet assessed
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A unified architecture of transcriptional regulatory elements ↗Trends in Genetics · 2015 · PMID 26073855not yet assessed
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Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers ↗Cancer Research · 2015 · PMID 26552699not yet assessed
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Human Gene Promoters Are Intrinsically Bidirectional ↗Molecular Cell · 2015 · PMID 26545074not yet assessed
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Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors ↗Epigenetics & Chromatin · 2015 · PMID 26673794not yet assessed
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The frequent evolutionary birth and death of functional promoters in mouse and human ↗Genome Research · 2015 · PMID 26228054not yet assessed
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A Unified Architecture of Transcriptional Regulatory Elements ↗bioRxiv (Cold Spring Harbor Laboratory) · 2015not yet assessed
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Define responsive design for web-forms using layout editorKTH Publication Database DiVA (KTH Royal Institute of Technology) · 2015not yet assessed
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Su1189 Genome-Wide Discovery of Inflammatory Bowel Disease-Specific Transcriptional Enhancers and Promoters Identifies Powerful Diagnostic Biomarkers ↗Gastroenterology · 2015not yet assessed
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MOESM3 of Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors ↗Figshare · 2015not yet assessed
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MOESM4 of Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors ↗Figshare · 2015not yet assessed
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MOESM2 of Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors ↗Figshare · 2015not yet assessed
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Problematiken kring Easyswitch och spårväxelstandarden 60ELund University Publications Student Papers (Lund University) · 2015not yet assessed
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Utveckling av web-baserad hantering avhandböcker och utrustningslager för operations- och anestesikliniken viduniversitetssjukhuset i LinköpingKTH Publication Database DiVA (KTH Royal Institute of Technology) · 2015not yet assessed
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An atlas of active enhancers across human cell types and tissues ↗Nature · 2014 · PMID 24670763not yet assessed
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A promoter-level mammalian expression atlas ↗Nature · 2014 · PMID 24670764not yet assessed
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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance ↗Nature Genetics · 2014 · PMID 24777452not yet assessed
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Nuclear stability and transcriptional directionality separate functionally distinct RNA species ↗Nature Communications · 2014 · PMID 25387874not yet assessed
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Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation ↗Proceedings of the National Academy of Sciences · 2014 · PMID 24706905not yet assessed
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Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model ↗BioEssays · 2014 · PMID 25450156not yet assessed
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Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation ↗Blood · 2014 · PMID 24671952not yet assessed
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Identification of TNF- -Responsive Promoters and Enhancers in the Intestinal Epithelial Cell Model Caco-2 ↗DNA Research · 2014 · PMID 24990076not yet assessed
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CAGE-defined promoter regions of the genes implicated in Rett Syndrome ↗BMC Genomics · 2014 · PMID 25539566not yet assessed
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Nucleosome regulatory dynamics in response to TGFNucleic Acids Research · 2014 · PMID 24771338L1 59/100
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Nuclear stability and transcriptional directionality separate functionally distinct RNA species ↗bioRxiv (Cold Spring Harbor Laboratory) · 2014not yet assessed
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Det är är bara fantasin som sätter gränserMalmö University Publications (Malmö University) · 2014not yet assessed
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Rymd Distributed Encrypted Peer-To-Peer Storage2014not yet assessed
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Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality ↗Nature Structural & Molecular Biology · 2013 · PMID 23851456not yet assessed
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Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions ↗Molecular Genetics and Metabolism · 2013 · PMID 24703491not yet assessed
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Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome ↗Genome Research · 2013 · PMID 24299735not yet assessed
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Analys av Arbetsmiljöverkets tillämpning av enkätverktyget NOSACQ-50KTH Publication Database DiVA (KTH Royal Institute of Technology) · 2013not yet assessed
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A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements ↗Algorithms for Molecular Biology · 2012 · PMID 22248020not yet assessed
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Baseband Inter-Chip Communication Interface Simulation for Baseband ASIC Multi-Processor Chip2012not yet assessed
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Fritidshemmets och övrig skolverksamhets samverkansansvarDiVA (University of Gävle) · 2012not yet assessed
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Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa ↗BMC Cancer · 2011 · PMID 22011431not yet assessed
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Frequent genetic differences between matched primary and metastatic breast cancer provide an approach to identification of biomarkers for disease progression ↗European Journal of Human Genetics · 2010 · PMID 20051991not yet assessed
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Recurrent genomic alterations in benign and malignant pheochromocytomas and paragangliomas revealed by whole-genome array comparative genomic hybridization analysis ↗Endocrine Related Cancer · 2010 · PMID 20410162not yet assessed
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Integrative epigenomic and genomic analysis of malignant pheochromocytoma ↗Experimental & Molecular Medicine · 2010 · PMID 20534969not yet assessed
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SICTIN: Rapid footprinting of massively parallel sequencing data ↗BioData Mining · 2010 · PMID 20707885not yet assessed
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A high resolution normalization strategy of chip-sequencing data using (multiple) experimental control measurements2010not yet assessed
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Strand-based mixture modeling of nucleosome positioning in HepG2 cells and their regulatory dynamics in response to TGF-beta treatment2010not yet assessed
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Decoding the Structural Layer of Transcriptional Regulation : Computational Analyses of Chromatin and Chromosomal AberrationsUppsala University Publications (Uppsala University) · 2010not yet assessed
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Genome‐wide high‐resolution analysis of DNA copy number alterations in NF1‐associated malignant peripheral nerve sheath tumors using 32K BAC array ↗Genes Chromosomes and Cancer · 2009 · PMID 19603524not yet assessed
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Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts ↗Bioinformatics · 2009 · PMID 19289446not yet assessed
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Characterization of novel and complex genomic aberrations in glioblastoma using a 32K BAC array ↗Neuro-Oncology · 2009 · PMID 19304958not yet assessed
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Histone H3 lysine 27 trimethylation in adult differentiated colon associated to cancer DNA hypermethylation ↗Epigenetics · 2009 · PMID 19276669not yet assessed
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Nucleosomes are well positioned in exons and carry characteristic histone modifications ↗Genome Research · 2009 · PMID 19687145not yet assessed
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Phenotypically Concordant and Discordant Monozygotic Twins Display Different DNA Copy-Number-Variation Profiles ↗The American Journal of Human Genetics · 2008 · PMID 18304490not yet assessed
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Somatic mosaicism for copy number variation in differentiated human tissues ↗Human Mutation · 2008 · PMID 18570184not yet assessed
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A segmental maximum a posteriori approach to genome-wide copy number profiling ↗Bioinformatics · 2008 · PMID 18204059not yet assessed
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A previously unrecognized microdeletion syndrome on chromosome 22 band q11.2 encompassing the <i>BCR</i> gene ↗American Journal of Medical Genetics Part A · 2007 · PMID 17676630not yet assessed
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Profiling of copy number variations (CNVs) in healthy individuals from three ethnic groups using a human genome 32 K BAC-clone-based array ↗Human Mutation · 2007 · PMID 18058796not yet assessed
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Overlapping phenotype of Wolf–Hirschhorn and Beckwith–Wiedemann syndromes in a girl with der(4)t(4;11)(pter;pter) ↗American Journal of Medical Genetics Part A · 2007 · PMID 17603794not yet assessed
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Att motivera på distans med ett transformellt ledarskapHogskolan Ihalmstad (Halmstad University) · 2007not yet assessed
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${\mathcal R}o{\mathcal S}y$ : A Rough Knowledge Base System ↗Lecture notes in computer science · 2005not yet assessed
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Implementation av ett kunskapsbas system för rough set theory med kvantitativa mätningarKTH Publication Database DiVA (KTH Royal Institute of Technology) · 2004not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Andersson R” paper on PubMed ↗