Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Antigen and checkpoint receptor engagement recalibrates T cell receptor signal strength.

  PMID 34534438 · PMC8585507 · Immunity · 2021 · 8 claims · 6 setups

  Has reproduction · 37

  TCR signal strength drives dynamic and time-dependent transcriptional changes in CD4+ T cells in vivo

  tg4 splenic sorted flow bulk checkpoint

• Proteomic analysis of mechanisms of hypoxia-induced apoptosis in trophoblastic cells.

  PMID 17299580 · PMC1796955 · International journal of medical sciences · 2006 · 8 claims · 7 setups

  Full-text index only

  Hypoxia induces apoptosis in JAR trophoblastic cells, shown by time-dependent increase in internucleosomal DNA fragmentation

  jar powerblot mtt death

• Increased levels of human beta-defensins mRNA in sexually HIV-1 exposed but uninfected individuals.

  PMID 18991618 · PMC4126611 · Current HIV research · 2008 · 8 claims · 5 setups

  Full-text index only

  ESN individuals show significantly higher HBD-2 and HBD-3 mRNA copy numbers in oral mucosa than healthy controls (HC)

  oral vaginal endocervical peripheral real-time pcr-rflp sequencing

• DeeReCT-APA: Prediction of Alternative Polyadenylation Site Usage Through Deep Learning.

  PMID 33662629 · PMC9801043 · Genomics, proteomics & bioinformatics · 2022 · 7 claims · 3 setups

  Has reproduction · 50

  DeeReCT-APA, a CNN-LSTM deep learning architecture, quantitatively predicts the usage level of all alternative PASs within a gene regardless of PAS number, treating it as a variable-length regression task.

  genome-wide fibroblast deep 3′-region 3′-mrna

• Report on the Molecular Approaches to Osteoarthritis Symposium, Imperial College London, UK, 18-20 April 2004.

  PMID 15380034 · PMC546282 · Arthritis research & therapy · 2004 · 8 claims · 8 setups

  Full-text index only

  OA cartilage and synovium show an 'IL-1 signature' of upregulated inflammatory cytokines/chemokines, with peripheral blood leukocytes possibly activated by trafficking through affected joints

  cartilage knee mesenchymal chondrocytes transcriptional clinical overexpression