Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 517

Assay: expressed ✕ Clear

An intergenic non-coding rRNA correlated with expression of the rRNA and frequency of an rRNA single nucleotide polymorphism in lung cancer cells.

PMID 19838300 · PMC2759515 · PloS one · 2009 · 8 claims · 7 setups

Full-text index only

An nc-rRNA is transcribed from the intergenic spacer upstream of the rRNA transcription start site in human lung epithelial and lung cancer cells, spanning roughly -1000 to at least +203/+300.

lung hpl1d rrna external pcr rt-pcr quantitative
Characterization of a natural mutator variant of human DNA polymerase lambda which promotes chromosomal instability by compromising NHEJ.

PMID 19806195 · PMC2751832 · PloS one · 2009 · 8 claims · 8 setups

Full-text index only

The W438 hPolλ variant has reduced base substitution fidelity in vitro compared to wild-type R438

normal recombinant hpolλ short pcr-sscp ber m13mp2
Nitrosative stress-induced s-glutathionylation of protein disulfide isomerase leads to activation of the unfolded protein response.

PMID 19773442 · PMC2756322 · Cancer research · 2009 · 7 claims · 8 setups

Full-text index only

PABA/NO treatment causes S-glutathionylation (not S-nitrosylation) of PDI in cells and in vitro

skov3 recombinant mtt daf-fm-da immunoprecipitation
Gene expression profiles of HIV-1-infected glia and brain: toward better understanding of the role of astrocytes in HIV-1-associated neurocognitive disorders.

PMID 19697136 · PMC3107560 · Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2010 · 8 claims · 6 setups

Full-text index only

Astrocyte gene expression dysregulation resulting from HIV-1 exposure may contribute to HIV-1 neuropathogenesis

fetal astrocytes brain macaque rapid microarray correlational
Identification of Four Potential Biomarkers Associated With Coronary Artery Disease in Non-diabetic Patients by Gene Co-expression Network Analysis.

PMID 32714363 · PMC7344232 · Frontiers in genetics · 2020 · 6 claims · 6 setups

Full-text index only

The midnight blue module and the yellow module play vital roles in the pathogenesis of CAD in non-diabetic patients

pbmcs blood apoe genes microarray rt-qpcr elisa
Exploration of effective biomarkers for venous thrombosis embolism in Behçet's disease based on comprehensive bioinformatics analysis.

PMID 38987624 · PMC11236978 · Scientific reports · 2024 · 6 claims · 8 setups

Full-text index only

Four hub genes (E2F1, GATA3, HDAC5, MSH2) serve as diagnostic biomarkers for VTE in BD with high accuracy (AUC 0.816)

peripheral degs candidate microarray weighted protein–protein
Identification of Molecular Subtypes of Clear-Cell Renal Cell Carcinoma in Patient-Derived Xenografts Using Multi-Omics.

PMID 40282537 · PMC12026142 · Cancers · 2025 · 8 claims · 7 setups

Full-text index only

Each ccRCC PDX resembles one of the human molecular subtypes closely at both the transcript and protein levels.

ccrcc differentially bulk lc-ms targeted
Revealing potential interfering genes between abdominal aortic aneurysm and periodontitis through machine learning and bioinformatics analysis.

PMID 40857330 · PMC12380325 · PloS one · 2025 · 6 claims · 8 setups

Full-text index only

90 interacting genes were identified at the intersection of AAA DEGs and periodontitis WGCNA module genes

abdominal gingival overlapping interacting microarray weighted kegg
Full-length transcriptome sequencing reveals the molecular mechanism of potato seedlings responding to low-temperature.

PMID 35300606 · PMC8932150 · BMC plant biology · 2022 · 7 claims · 8 setups

Full-text index only

Combined SGS+TGS full-length transcriptome sequencing generated 41,016 high-quality potato transcripts, including 15,189 putative new transcripts

potato pacbio illumina physiological
LINE-1 Locus Transcription Nucleates Oncogenic Chromatin Architecture.

PMID 41489510 · PMC13040219 · Cancer discovery · 2026 · 8 claims · 8 setups

Full-text index only

LINE-1 RNAs are primarily chromatin-associated nascent transcripts rather than cytosolic mRNAs

mcf7 cancer qrt-pcr single-molecule chirp-seq
Human endogenous retrovirus profiling reveals heterogenous expression in cutaneous melanoma.

PMID 41971443 · PMC13061668 · Frontiers in oncology · 2026 · 7 claims · 8 setups

Full-text index only

HERV expression differs between primary and metastatic cutaneous melanoma

tcga-skcm metastatic normal selected bulk consensus orf
Integration of a neuronal RNAseq dataset with the draft Gryllus bimaculatus transcriptome refines gene predictions and highlights potential systematic response to injury.

PMID 42054377 · PMC13127959 · PloS one · 2026 · 8 claims · 7 setups

Full-text index only

Integrating prothoracic ganglion RNAseq data with the draft genome refines gene predictions, adding 3,868 novel genes and 9,172 new transcript isoforms (including non-coding transcripts)

bimaculatus prothoracic differentially gbig rna-seq genome differential
Gene Expression Patterns Regulating Peanut Reproductive Phenology.

PMID 42099581 · PMC13147162 · Plant direct · 2026 · 8 claims · 6 setups

Full-text index only

Overall gene expression was distinct between Tifrunner and GT-C20 in both leaf and shoot tip tissues

leaf deseq2 shoot gene bulk differential principal
MicroRNA Enrichment and Docking-Based Evaluation of Ilomastat Targeting of MMP-2 in Esophageal Squamous Cell Carcinoma: Insights from a South African Cohort.

PMID 42158110 · PMC13181172 · Computational and structural biotechnology journal · 2026 · 7 claims · 5 setups

Full-text index only

The miR-29 family inhibits MMP-2 and represents a key regulatory axis in tumor invasion

paired deg mmp-2 escc bulk pathway molecular
Mouse placentae generated by in vitro fertilization exhibit altered gene expression, activated hypoxia responses, and reduced fitness†.

PMID 40874534 · PMC12808545 · Biology of reproduction · 2026 · 6 claims · 6 setups

Full-text index only

IVF-conceived mouse placentae exhibit global and cell type–specific gene expression differences compared to FB placentae

e12.5 differentially trophoblast placenta single-nucleus pseudobulk pathway
CTCF's loop-independent functions prevail over chromatin looping in the acute degradation system.

PMID 41191909 · PMC13107559 · Protein & cell · 2026 · 8 claims · 8 setups

Full-text index only

CTCF regulates Ppa2 and Zbtb39 expression through mechanisms independent of chromatin looping

ctcf-aid mescs rna-seq chip-seq western
Comparative Transcriptomic Profiling Identifies IL-1β as a Non-Canonical Driver of Human Dendritic Cell Maturation.

PMID 41472934 · PMC12745711 · Iranian journal of biotechnology · 2026 · 8 claims · 7 setups

Full-text index only

IL-1β can substitute for PAMPs in inducing DC maturation via a non-canonical pathway distinct from classical TLR-mediated activation

monocyte-derived dendritic bulk principal pathway
Oxidative stress and GPX2 control pancreatic vs. non-pancreatic cell fate in human endoderm.

PMID 41484137 · PMC12881361 · Nature communications · 2026 · 8 claims · 8 setups

Full-text index only

GPX2 is a critical regulator of human posterior foregut differentiation, with oxidative stress acting as a key determinant of pancreatic vs. non-pancreatic cell fate

hpsc-derived hpsc fetal bulk immunofluorescence flow
Colorectal microenvironment determines the prognosis of colorectal cancer.

PMID 41495419 · PMC12868731 · Experimental & molecular medicine · 2026 · 8 claims · 7 setups

Full-text index only

The colorectal microenvironment (classified via NBT gene expression as tumor-supportive vs healthy) can serve as a prognostic biomarker predicting cancer invasiveness and recurrence

paired nbt slide bulk bulk 16s single-cell
Unraveling the Causal Linkages of RBP7 and SCGB3A1 on Pelvic Organ Prolapse: Multifaceted Insights From Genome-Wide Mendelian Randomization, Single-Cell RNA Analysis, and Network Pharmacology.

PMID 41497737 · PMC12765987 · BioMed research international · 2026 · 8 claims · 7 setups

Full-text index only

High RBP7 expression causally increases POP risk

vaginal gwas rbp7 key single-cell mendelian protein-protein

Experiments

An intergenic non-coding rRNA correlated with expression of the rRNA and frequency of an rRNA single nucleotide polymorphism in lung cancer cells.

Characterization of a natural mutator variant of human DNA polymerase lambda which promotes chromosomal instability by compromising NHEJ.

Nitrosative stress-induced s-glutathionylation of protein disulfide isomerase leads to activation of the unfolded protein response.

Gene expression profiles of HIV-1-infected glia and brain: toward better understanding of the role of astrocytes in HIV-1-associated neurocognitive disorders.

Identification of Four Potential Biomarkers Associated With Coronary Artery Disease in Non-diabetic Patients by Gene Co-expression Network Analysis.

Exploration of effective biomarkers for venous thrombosis embolism in Behçet's disease based on comprehensive bioinformatics analysis.

Identification of Molecular Subtypes of Clear-Cell Renal Cell Carcinoma in Patient-Derived Xenografts Using Multi-Omics.

Revealing potential interfering genes between abdominal aortic aneurysm and periodontitis through machine learning and bioinformatics analysis.

Full-length transcriptome sequencing reveals the molecular mechanism of potato seedlings responding to low-temperature.

LINE-1 Locus Transcription Nucleates Oncogenic Chromatin Architecture.

Human endogenous retrovirus profiling reveals heterogenous expression in cutaneous melanoma.

Integration of a neuronal RNAseq dataset with the draft Gryllus bimaculatus transcriptome refines gene predictions and highlights potential systematic response to injury.

Gene Expression Patterns Regulating Peanut Reproductive Phenology.

MicroRNA Enrichment and Docking-Based Evaluation of Ilomastat Targeting of MMP-2 in Esophageal Squamous Cell Carcinoma: Insights from a South African Cohort.

Mouse placentae generated by in vitro fertilization exhibit altered gene expression, activated hypoxia responses, and reduced fitness†.

CTCF's loop-independent functions prevail over chromatin looping in the acute degradation system.

Comparative Transcriptomic Profiling Identifies IL-1β as a Non-Canonical Driver of Human Dendritic Cell Maturation.

Oxidative stress and GPX2 control pancreatic vs. non-pancreatic cell fate in human endoderm.

Colorectal microenvironment determines the prognosis of colorectal cancer.

Unraveling the Causal Linkages of RBP7 and SCGB3A1 on Pelvic Organ Prolapse: Multifaceted Insights From Genome-Wide Mendelian Randomization, Single-Cell RNA Analysis, and Network Pharmacology.