Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 99
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.
PMID 40926267 · PMC12421755 · Genome biology · 2025 · 8 claims · 3 setups
Over 25% of critical metadata are omitted, with only 74.8% of relevant phenotypes available in publications or public repositories.
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Has reproduction · 94
Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials.
PMID 33558569 · PMC7870661 · Scientific data · 2021 · 7 claims · 7 setups
A unified collection of 101 manually curated and homogenized transcriptomics datasets covering human, mouse, and rat ENM exposures in vitro and in vivo was compiled.
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Has reproduction · 50
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.
PMID 36810800 · PMC9944229 · GigaScience · 2022 · 8 claims · 5 setups
Yevis is a system that builds a workflow registry which automatically validates and tests workflows prior to publication, ensuring they are 'reusable with confidence'.
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Has reproduction · 95
The archives are half-empty: an assessment of the availability of microbial community sequencing data.
PMID 32859925 · PMC7455719 · Communications biology · 2020 · 8 claims · 5 setups
More than half of surveyed amplicon sequencing studies were affected by lack of data deposition, improper file formatting, or inconsistent labeling that impede reuse.