Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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A biomedically enriched collection of 7000 human ORF clones.
PMID 18231609 · PMC2211400 · PloS one · 2008 · 8 claims · 4 setups
Produced and made available over 7000 fully sequence-verified plasmid ORF clones representing over 3400 unique human genes, in both closed (stop codon) and fusion (no stop codon) formats.
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Has reproduction
Using prototyping to choose a bioinformatics workflow management system.
PMID 33630841 · PMC7906312 · PLoS computational biology · 2021 · 7 claims · 6 setups
Prototyping a subset of the RiboViz workflow in each candidate system gives more insight into suitability, ease of use, and documentation quality than reading documentation or working through developer tutorials alone
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Full-text index only
BLIT: an R package for seamless integration of command-line bioinformatics tool universe.
PMID 42164079 · PMC13183670 · Bioinformatics advances · 2026 · 8 claims · 5 setups
BLIT provides a unified R6-based framework for seamless integration of command-line bioinformatics tools within R, replacing fragile string-based system() calls.
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Has reproduction · 78
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
PMID 41505094 · PMC12781895 · Nucleic acids research · 2026 · 7 claims · 6 setups
MERLIN-P-TFA network inference on 18 curated public RNA-seq datasets produced a genome-wide GRN resource for A. fumigatus called GRAsp.