Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

Publications 1.3k Datasets 392.5k Experiments 65

Assay: transfer ✕ Clear

Magnetization transfer imaging in 'premanifest' Huntington's disease.

PMID 19823894 · PMC2837878 · Journal of neurology · 2010 · 8 claims · 4 setups

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MTI parameters (mean MTR and normalized peak height) of whole brain, grey matter and white matter did not differ significantly between premanifest HD carriers and non-carriers

premanifest magnetization 3d-t1-weighted clinical
CellPolaris: Transfer Learning for Gene Regulatory Network Construction to Guide Cell State Transitions.

PMID 41498638 · PMC12948241 · Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026 · 8 claims · 8 setups

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CellPolaris is a unified computational framework performing TF-centered GRN construction, master TF identification, and TF perturbation simulation

bulk previously round paired transfer-learning cross-species
Alexander Meissner: learning the reprogramming code.

PMID 19704017 · PMC2733751 · The Journal of cell biology · 2009 · 8 claims · 6 setups

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A defined set of factors present in oocytes and embryonic stem (ES) cells can reprogram a somatic cell to pluripotency, as shown by nuclear transfer and ES cell/somatic cell fusion experiments

blastocysts somatic fused genomic nuclear inducible fusion
Ion-Scale Magnetic Flux Rope Generated From Electron-Scale Magnetopause Current Sheet: Magnetospheric Multiscale Observations.

PMID 38440152 · PMC10909477 · Journal of geophysical research. Space physics · 2023 · 8 claims · 4 setups

Has reproduction · 68

An ion-scale magnetic flux rope (ISFR) can be generated from a reconnecting electron-scale current sheet (ECS) at the subsolar magnetopause via secondary reconnection

subsolar magnetopause flux grad-shafranov electron four-spacecraft
scXDR: drug response prediction across single-cell datasets via heterogeneous network transfer learning.

PMID 41507436 · PMC12859067 · Communications biology · 2026 · 7 claims · 7 setups

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scXDR outperforms seven methods that transfer drug response information from bulk RNA-seq to single-cell data, across all four evaluated scenarios

single-cell scrna-seq scxdr gse117872 heterogeneous benchmarking type
Quantification of local morphodynamics and local GTPase activity by edge evolution tracking.

PMID 19008941 · PMC2573959 · PLoS computational biology · 2008 · 7 claims · 2 setups

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Edge evolution tracking (EET) is an algorithm that quantifies the relationship between local morphological changes and local fluorescence intensities around a cell edge using time-lapse images.

fret computational
Reference based annotation with GeneMapper.

PMID 16600017 · PMC1557983 · Genome biology · 2006 · 7 claims · 6 setups

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GeneMapper transfers reference gene annotations to target genomes with higher accuracy than GeneWise and Projector

orthologous human-mouse chicken encode reference-based multi-species reciprocal
Antimicrobial resistance dissemination via horizontal gene transfer is constrained in stratified waters.

PMID 41813906 · PMC13022341 · Communications biology · 2026 · 8 claims · 7 setups

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No evidence for recent HGT-mediated dissemination of ARGs across depth layers was detected, despite genetic compatibility among co-occurring bacteria.

stratified freshwater predicted arg-carrying depth-resolved horizontal arg
CellPredX, a computational framework for cross-data type, cross-sample, and cross-protocol cell type annotation through domain adaptation and deep metric learning.

PMID 41481570 · PMC12758788 · PLoS computational biology · 2026 · 8 claims · 7 setups

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CellPredX is a unified semi-supervised framework integrating domain adaptation and deep metric learning to align heterogeneous embeddings for cross-modality cell type annotation.

pbmc fetal pancreas gse149683 matched unmatched cross-protocol
The association between headache and Val158Met polymorphism in the catechol-O-methyltransferase gene: the HUNT Study.

PMID 16688411 · PMC3451703 · The journal of headache and pain · 2006 · 7 claims · 3 setups

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No association was found between COMT Val158Met polymorphism and migraine in a population-based sample.

peripheral population hunt genotyping structured extraction
Artificial Intelligence Approach in Machine Learning-Based Modeling and Networking of the Coronavirus Pathogenesis Pathway.

PMID 40699865 · PMC12191508 · Current issues in molecular biology · 2025 · 8 claims · 8 setups

Has reproduction

The coronavirus pathogenesis pathway is activated in SARS-CoV-2-infected iPSC-derived cardiac cells and in SARS-CoV/SARS-CoV-2-infected LUAD cells

ace2-transfected calu-3 luad ipsc-derived ipa sequencing convolutional
Chemical genomics: what will it take and who gets to play?

PMID 11423004 · PMC138939 · Genome biology · 2001 · 8 claims · 8 setups

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Scaling chemical genetics to a genome-wide 'chemical genomics' requires large, well-funded, multidisciplinary centers that integrate compound libraries, protein resources, automation, and profiling technology, and freely distribute data and reagents.

iccb fluorescently yeast engineered cell-based small-molecule expression
Estimating sparse regression models in multi-task learning and transfer learning through adaptive penalisation.

PMID 40674582 · PMC12502914 · Bioinformatics (Oxford, England) · 2025 · 8 claims · 3 setups

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A two-stage procedure using feature-specific and sign-specific adaptive weights shares information on feature selection, effect direction, and effect size between related regression problems.

simulated multi-task penalised adaptive hyperparameter
Artificial Intelligence Meets Whole Slide Images: Deep Learning Model Shapes an Immune-Hot Tumor and Guides Precision Therapy in Bladder Cancer.

PMID 36245985 · PMC9553530 · Journal of oncology · 2022 · 8 claims · 8 setups

Has reproduction

A three-class WSI cluster (C0/C1/C2) derived via mini batch K-means clustering on Inception V3-extracted image features is significantly associated with overall survival and is an independent prognostic predictor in BLCA.

tcga-blca gse32894 deep transfer machine
JunB Is Critical for Survival of T Helper Cells.

PMID 35837408 · PMC9273772 · Frontiers in immunology · 2022 · 7 claims · 7 setups

Has reproduction · 69

JunB is required for clonal expansion of Th1, Th2, and Th17 cells

ot-ii junb naive th1 flow adoptive th1
Viruses take center stage in cellular evolution.

PMID 16787527 · PMC1779534 · Genome biology · 2006 · 8 claims · 6 setups

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A large poxvirus-like dsDNA virus may have become the eukaryotic nucleus after being taken in by an ancestral cell (viral eukaryogenesis)

acanthamoeba coccolithovirus nucleocytoplasmic dsdna whole-genome phylogenetic comparative
Aerobic nonylphenol degradation and nitro-nonylphenol formation by microbial cultures from sediments.

PMID 20043151 · PMC2825322 · Applied microbiology and biotechnology · 2010 · 8 claims · 8 setups

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Aerobic biodegradation of branched NP in polluted river sediment occurs within 8 days after a 2-day lag phase at 30°C

np-polluted sediment-derived fourth-generation extracted biodegradation serial metabolite
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

PMID 27832824 · PMC5105290 · Genome biology · 2016 · 8 claims · 7 setups

Has reproduction · 84

The A. glabripennis genome encodes a uniquely diverse arsenal of enzymes that degrade plant cell wall polysaccharide networks (cellulose, hemicellulose, pectin) and detoxify plant allelochemicals.

single glabripennis amino whole-genome gene busco
Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection.

PMID 36450262 · PMC9792173 · Cell reports · 2022 · 8 claims · 6 setups

Has reproduction · 50

IL-21-producing Tfh CD4 T cells repopulate after CD4 depletion but remain at reduced frequency compared with control mice

cd44+ splenocytes spleen tcr scrna-seq flow spatial
Intrinsic suppression of type I interferon production underlies the therapeutic efficacy of IL-15-producing natural killer cells in B-cell acute lymphoblastic leukemia.

PMID 37217248 · PMC10231005 · Journal for immunotherapy of cancer · 2023 · 8 claims · 8 setups

Has reproduction · 76

High expression of IFN-I signaling/response genes (IFNAR1, IFNAR2, STAT1, MX1, OAS1) predicts favorable relapse-free survival in B-ALL patients

cog b-all eμ-myc crispra gene-expression-based flow mass

Experiments

Magnetization transfer imaging in 'premanifest' Huntington's disease.

CellPolaris: Transfer Learning for Gene Regulatory Network Construction to Guide Cell State Transitions.

Alexander Meissner: learning the reprogramming code.

Ion-Scale Magnetic Flux Rope Generated From Electron-Scale Magnetopause Current Sheet: Magnetospheric Multiscale Observations.

scXDR: drug response prediction across single-cell datasets via heterogeneous network transfer learning.

Quantification of local morphodynamics and local GTPase activity by edge evolution tracking.

Reference based annotation with GeneMapper.

Antimicrobial resistance dissemination via horizontal gene transfer is constrained in stratified waters.

CellPredX, a computational framework for cross-data type, cross-sample, and cross-protocol cell type annotation through domain adaptation and deep metric learning.

The association between headache and Val158Met polymorphism in the catechol-O-methyltransferase gene: the HUNT Study.

Artificial Intelligence Approach in Machine Learning-Based Modeling and Networking of the Coronavirus Pathogenesis Pathway.

Chemical genomics: what will it take and who gets to play?

Estimating sparse regression models in multi-task learning and transfer learning through adaptive penalisation.

Artificial Intelligence Meets Whole Slide Images: Deep Learning Model Shapes an Immune-Hot Tumor and Guides Precision Therapy in Bladder Cancer.

JunB Is Critical for Survival of T Helper Cells.

Viruses take center stage in cellular evolution.

Aerobic nonylphenol degradation and nitro-nonylphenol formation by microbial cultures from sediments.

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection.

Intrinsic suppression of type I interferon production underlies the therapeutic efficacy of IL-15-producing natural killer cells in B-cell acute lymphoblastic leukemia.