Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.

  PMID 36321549 · PMC9627675 · Molecular systems biology · 2022 · 8 claims · 6 setups

  Has reproduction · 53

  spliceJAC quantifies multivariate mRNA splicing from unspliced/spliced count matrices to construct cell state-specific gene-gene (Jacobian) interaction matrices.

  two-gene three-gene emt circuit simulation grn scrna-seq

• Update on diabetes mellitus.

  PMID 15502249 · PMC3839330 · Disease markers · 2004 · 8 claims · 7 setups

  Full-text index only

  Type 1 diabetes results from selective destruction of pancreatic beta cells via T-cell and cytokine mediated autoimmune mechanisms, possibly involving destruction of peri-islet Schwann cells.

  nod t1dm islets 3t3-l1 seldi-tof tof two-dimensional

• Distinct senotypes in p16- and p21-positive cells across human and mouse aging tissues.

  PMID 41162753 · PMC12669595 · The EMBO journal · 2025 · 8 claims · 8 setups

  Has reproduction · 50

  p16+ and p21+ senescent cells are largely distinct, non-overlapping populations across murine and human aging tissues, with only rare double-positive cells

  young spleen brain single-cell mass velocity

• Phase transition specified by a binary code patterns the vertebrate eye cup.

  PMID 34757798 · PMC8580326 · Science advances · 2021 · 7 claims · 6 setups

  Has reproduction · 74

  FGF signaling is required for ciliary margin (CM) development; loss of FGFRs in peripheral retina abolishes CM markers and causes aniridia

  embryonic e13.5 retina immunostaining single-cell velocity

• Collisionless relaxation of a disequilibrated current sheet and implications for bifurcated structures.

  PMID 34145266 · PMC8213726 · Nature communications · 2021 · 6 claims · 3 setups

  Has reproduction · 95

  Collisionless transitions among four single-particle orbit classes are responsible for the relaxation/equilibration of a disequilibrated current sheet.

  harris disequilibrated earth's single-particle particle-in-cell spacecraft

• Widespread nitrous oxide undersaturation in farm waterbodies creates an unexpected greenhouse gas sink.

  PMID 31036633 · PMC6525509 · Proceedings of the National Academy of Sciences of the United States of America · 2019 · 7 claims · 5 setups

  Has reproduction · 87

  The majority (67%) of small agricultural farm reservoirs are undersaturated and act as atmospheric N2O sinks despite being highly eutrophic and N-rich.

  small agricultural reservoir dissolved water physical

• Downstream high-speed plasma jet generation as a direct consequence of shock reformation.

  PMID 35105885 · PMC8807623 · Nature communications · 2022 · 7 claims · 6 setups

  Has reproduction · 67

  High-speed downstream jets at Earth's bow shock are generated as a direct consequence of shock reformation.

  earth's mms mms2 upstream in-situ cross-correlation reduced

• Direct observations of cross-scale wave-particle energy transfer in space plasmas.

  PMID 39919183 · PMC11804927 · Science advances · 2025 · 7 claims · 8 setups

  Has reproduction · 94

  Fluid-scale ULF waves resonate with reflected ions, modifying their velocity distributions and driving growth of ion-scale magnetosonic-whistler waves

  terrestrial mms observed simulated magnetic electric ion

• Turbulent dynamo in the terrestrial magnetosheath.

  PMID 41708617 · PMC13032041 · Nature communications · 2026 · 6 claims · 3 setups

  Has reproduction · 70

  Evidence for a turbulent small-scale dynamo is present in the terrestrial magnetosheath, captured by high-resolution MMS observations.

  terrestrial multi-point in-situ magnetic

• Revealing an unexpectedly low electron injection threshold via reinforced shock acceleration.

  PMID 39805850 · PMC11730962 · Nature communications · 2025 · 8 claims · 4 setups

  Has reproduction · 68

  A reinforced shock acceleration model combining foreshock transients, wave-particle interactions, and variable stellar wind conditions operating across multiple scales enables electrons to consistently reach relativistic energies

  mms artemis foreshock six situ wave multi-event

• Ion-Scale Magnetic Flux Rope Generated From Electron-Scale Magnetopause Current Sheet: Magnetospheric Multiscale Observations.

  PMID 38440152 · PMC10909477 · Journal of geophysical research. Space physics · 2023 · 7 claims · 7 setups

  Has reproduction · 68

  Ion-scale magnetic flux ropes can be generated from a reconnecting electron-scale current sheet at the subsolar magnetopause via secondary reconnection

  subsolar ftes magnetopause in-situ plasma grad-shafranov

• Directly observing the magnetic rope contraction and expansion in space.

  PMID 41298493 · PMC12749066 · Nature communications · 2025 · 5 claims · 4 setups

  Has reproduction · 61

  Direct evidence is provided for magnetic rope contraction and expansion in space using the first-order Taylor expansion (FOTE) method and MMS four-point measurements

  earth's in-situ plasma pressure

• Getting started in computational immunology.

  PMID 18769677 · PMC2518523 · PLoS computational biology · 2008 · 8 claims · 7 setups

  Full-text index only

  Affinity maturation is driven by cycles of somatic hypermutation and affinity-dependent selection acting on B cell Ig receptors.

  splenic lymphocytes lymph secondary flow microdissection intravital

• Lineage commitment of dermal fibroblast progenitors is controlled by Kdm6b-mediated chromatin demethylation.

  PMID 37602956 · PMC10548174 · The EMBO journal · 2023 · 6 claims · 5 setups

  Has reproduction · 91

  E14.5 DFPs have a repressed transcriptional profile marked by high H3K27me3 and inaccessible chromatin at lineage-specific genes

  skin dermal single-cell chamber chip-seq