Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction
Using prototyping to choose a bioinformatics workflow management system.
PMID 33630841 · PMC7906312 · PLoS computational biology · 2021 · 7 claims · 6 setups
Prototyping a subset of the RiboViz workflow in each candidate system gives more insight into suitability, ease of use, and documentation quality than reading documentation or working through developer tutorials alone
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Full-text index only
Genomics and public health: development of Web-based training tools for increasing genomic awareness.
PMID 15888236 · PMC1327719 · Preventing chronic disease · 2005 · 7 claims · 4 setups
Web-based training tools (Genomics for Public Health Practitioners and Six Weeks to Genomic Awareness) can increase genomic awareness among public health practitioners nationwide.
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Has reproduction
All of gene expression (AOE): An integrated index for public gene expression databases.
PMID 31978081 · PMC6980531 · PloS one · 2020 · 6 claims · 4 setups
ArrayExpress (AE) discontinued importing data from GEO in 2017, causing new GEO entries to become unavailable from AE
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Full-text index only
Local combinational variables: an approach used in DNA-binding helix-turn-helix motif prediction with sequence information.
PMID 19651875 · PMC2761287 · Nucleic acids research · 2009 · 8 claims · 7 setups
The LCV approach predicts HTH motifs with 93.29% accuracy, 93.93% sensitivity and 92.66% specificity using only primary sequence information