Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• The genome sequence of the Lesser Horseshoe Bat, Rhinolophus hipposideros (Bechstein, 1800) (Chiroptera: Rhinolophidae).

  PMID 42004187 · PMC13090764 · Wellcome open research · 2026 · 8 claims · 6 setups

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  A phased, chromosome-level genome assembly was produced for Rhinolophus hipposideros as part of the Bat1K and Darwin Tree of Life projects.

  rhinolophus pacbio hi-c sequencing

• The genome sequence of the Roundleaf geranium, Geranium rotundifolium L. (Geraniales: Geraniaceae).

  PMID 42021764 · PMC13096780 · Wellcome open research · 2026 · 8 claims · 8 setups

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  The genome assembly of Geranium rotundifolium has a total length of 497.00 megabases, with 97.57% scaffolded into 13 chromosomal pseudomolecules.

  leaf silica-dried pacbio alternate flow barcoding pacbio

• The genome sequence of the Acorn Weevil, Curculio glandium (T.Marsham, 1802) (Coleoptera: Curculionidae).

  PMID 42021765 · PMC13096787 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosomally complete genome assembly was produced for Curculio glandium (Acorn Weevil) as part of the Darwin Tree of Life project

  curculio assembled alternate pacbio hi-c sequencing

• The genome sequence of the Portuguese Dappled White, Euchloe tagis (Hübner, 1804) (Lepidoptera: Pieridae).

  PMID 42028159 · PMC13100615 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A chromosome-level genome assembly was generated for Euchloe tagis (Portuguese Dappled White) as part of Project Psyche

  euchloe pacbio hi-c k-mer

• The genome sequence of the Northern Grizzled Skipper, Pyrgus centaureae (Rambur, 1839) (Lepidoptera: Hesperiidae).

  PMID 42038589 · PMC13109703 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was produced for Pyrgus centaureae (Northern Grizzled Skipper) as part of Project Psyche.

  pyrgus pacbio hi-c rna-seq

• The genome sequence of the Southern White Admiral, Limenitis reducta (Staudinger, 1901) (Lepidoptera: Nymphalidae).

  PMID 42078575 · PMC13129534 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A chromosome-level genome assembly was generated for a female Limenitis reducta specimen, comprising two phased haplotypes.

  reducta pacbio assembled haplotype pacbio hi-c k-mer

• The genome sequence of the Woodland Grayling, Hipparchia fagi (Scopoli, 1763) (Lepidoptera: Nymphalidae).

  PMID 42078576 · PMC13133624 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level, haplotype-resolved genome assembly was produced for Hipparchia fagi (Woodland Grayling) as part of Project Psyche.

  organism pacbio computational assembled pacbio hi-c k-mer

• The genome sequence of the nematode Ostertagia ostertagi (Stiles, 1892) (Rhabditida, Trichostrongylidae).

  PMID 42094077 · PMC13139848 · Wellcome open research · 2026 · 8 claims · 7 setups

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  A chromosome-level genome assembly was generated for a single male specimen of Ostertagia ostertagi (isolate MOo2).

  single pooled unassembled assembled pacbio hi-c k-mer

• The chromosomal genome sequence of the moon jellyfish, Aurelia sp. 4 Dawson et al. 2005 (Semaeostomeae: Ulmaridae) and its associated microbial metagenome sequences.

  PMID 42116832 · PMC13157608 · Wellcome open research · 2026 · 7 claims · 8 setups

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  Aurelia sp. 4 chromosomal genome assembly has a total length of 462.10 Mb with 99.99% of sequence scaffolded into 21 chromosomal pseudomolecules

  aurelia microbial pacbio hi-c rna-seq

• The genome sequence of the Red-necked Footman, Atolmis rubricollis (Linnaeus, 1758) (Lepidoptera: Erebidae).

  PMID 42148442 · PMC13173283 · Wellcome open research · 2026 · 7 claims · 8 setups

  Full-text index only

  A chromosome-level genome assembly was generated for a female Atolmis rubricollis (Red-necked Footman) specimen as part of the Darwin Tree of Life project.

  atolmis barcoding pacbio hi-c

• The chromosomal genome sequence of the sponge, Rhopaloeides odorabile Thompson, Murphy, Bergquist & Evans, 1987 (Dictyoceratida: Spongiidae) and its associated microbial metagenome sequences.

  PMID 42232316 · PMC13224822 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A chromosome-level genome assembly was produced for the sponge Rhopaloeides odorabile using the Tree of Life pipeline

  rhopaloeides odorabile-associated odorabile recovered pacbio hi-c sequencing

• The genome sequence of Geoffroy's Bat, Myotis emarginatus (Geoffroy, 1806) (Chiroptera: Vespertilionidae).

  PMID 42238844 · PMC13227098 · Wellcome open research · 2026 · 8 claims · 7 setups

  Full-text index only

  A chromosome-level genome assembly was generated for Myotis emarginatus (Geoffroy's Bat) as part of the Darwin Tree of Life Project

  myotis pacbio hi-c rna-seq

• The genome sequence of the flat clown beetle, Hololepta plana (Sulzer, 1776) (Coleoptera: Histeridae).

  PMID 42255359 · PMC13237540 · Wellcome open research · 2026 · 8 claims · 8 setups

  Full-text index only

  A chromosome-level genome assembly was produced for Hololepta plana (icHolPlan1) using the Darwin Tree of Life pipeline

  hololepta head abdomen hifi barcoding pacbio hi-c

• The genome sequence of a muscid fly, Phaonia angelicae (Scopoli, 1763) (Diptera: Muscidae).

  PMID 42255360 · PMC13234548 · Wellcome open research · 2026 · 8 claims · 8 setups

  Full-text index only

  A chromosome-level genome assembly was generated for Phaonia angelicae, a muscid fly, as part of the Darwin Tree of Life project.

  phaonia pacbio hi-c k-mer

• The chromosomal genome sequence of the feather duster worm, Sabellastarte sp. h YS-2021 (Sabellida: Sabellidae) and its associated microbial metagenome sequences.

  PMID 42255362 · PMC13234546 · Wellcome open research · 2026 · 7 claims · 8 setups

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  A chromosomal-level genome assembly was generated for Sabellastarte sp. h YS-2021, with 97.94% of the sequence scaffolded into 14 chromosomal pseudomolecules

  sabellastarte microbial pacbio hi-c rna-seq

• The genome sequence of the Club-Horned Wood Borer Wasp, Trypoxylon clavicerum Lepeletier de Saint Fargeau & Audinet-Serville, 1828 (Hymenoptera: Crabronidae).

  PMID 42255363 · PMC13237539 · Wellcome open research · 2026 · 8 claims · 8 setups

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  A genome assembly was generated for an individual female Trypoxylon clavicerum (Club-Horned Wood Borer Wasp) as part of the Darwin Tree of Life project

  trypoxylon pacbio assembled barcoding high pacbio

• Importance sampling for the infinite sites model.

  PMID 18976228 · PMC2832804 · Statistical applications in genetics and molecular biology · 2008 · 7 claims · 2 setups

  Full-text index only

  A new importance sampling proposal distribution for the ISM, derived from a new result on exact sampling from a single segregating site, generally shows greater efficiency than the GT and SD proposals.

  simulated empirical computational reanalysis

• AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.

  PMID 15980513 · PMC1160219 · Nucleic acids research · 2005 · 8 claims · 1 setups

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  AUGUSTUS web server allows users to impose constraints (splice sites, translation start/stop, known exons, exonic/intronic intervals) on predicted gene structures

  drosophila initio

• Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB).

  PMID 32463383 · PMC7734503 · Journal of integrative bioinformatics · 2020 · 7 claims · 4 setups

  Has reproduction · 78

  Public fungal metabarcoding raw DNA data and their associated environmental metadata in sequence archives are heterogeneously annotated and lack a uniform processing pipeline, preventing large-scale biodiversity/distribution assessments.

  selected pubmed sra collection-site pdf pubmed sra

• Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.

  PMID 36721781 · PMC9884472 · PeerJ · 2023 · 8 claims · 4 setups

  Has reproduction · 50

  Kallisto was the most accurate VCE on simulated data, having the lowest RRMSE, followed by Freyja

  sars-cov-2 publicly simulated simulated amplicon-based variant