Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• sedimix: a workflow for the analysis of hominin nuclear DNA sequences from sediments.

  PMID 41512286 · PMC12866666 · Bioinformatics (Oxford, England) · 2026 · 8 claims · 6 setups

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  sedimix is a snakemake workflow that processes raw sediment DNA sequencing reads (fastq) through filtering, taxonomic classification, mapping, and duplicate/quality filtering to output hominin-derived BAM files and summary statistics.

  simulated 000-year-old cervid gargammel-simulated metagenomic shotgun

• Preferential access to genetic information from endogenous hominin ancient DNA and accurate quantitative SNP-typing via SPEX.

  PMID 19864251 · PMC2811011 · Nucleic acids research · 2010 · 7 claims · 8 setups

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  SPEX-type approaches preferentially access genetic information from damaged, degraded endogenous ancient DNA templates over modern human contaminant DNA

  iceman hb50 pe168 lq4 relative pcr spex