Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 75
Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases.
PMID 34680427 · PMC8533098 · Biomedicines · 2021 · 8 claims · 7 setups
AD and PD patients can be stratified by transcriptomic clustering into three subclasses with distinct gene expression and metabolic profiles
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UBD: incorporating uncertainty in cell type proportion estimates from bulk samples to infer cell-type-specific profiles.
PMID 41520227 · PMC12895075 · Briefings in bioinformatics · 2026 · 7 claims · 4 setups
Existing CTS deconvolution methods (e.g., CIBERSORTx, TCA, bMIND, CellDMC, HBI) require cell type proportions that are in practice only estimated, not known, introducing unaccounted uncertainty into CTS inference.
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Deep-learning prediction of gene expression from personal genomes.
PMID 41495833 · PMC12869966 · Genome biology · 2026 · 8 claims · 8 setups
Fine-tuning Enformer on paired personal WGS and RNA-seq data (Variformer) corrects Enformer's failure to predict inter-individual gene expression differences across held-out people.
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Accurate detection of somatic single-nucleotide variants from bulk RNA-seq data using RNA-MosaicHunter.
PMID 41505106 · PMC12781890 · Nucleic acids research · 2026 · 6 claims · 8 setups
RNA-MosaicHunter accurately detects sSNVs from bulk RNA-seq with high precision (94.7% in TCGA, 99.3% in cell-line mixture) in default mode