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28 matching publication(s)

Publication	Journal	Year	Score	Verdict
Identification of key genes in chickpea transcriptomics and the development of ChickpeaOmicsR as a comprehensive resource to advance breeding and genomic studie ⚑ PMID 41909810	Front Bioinform	2026	56	L1 56/100 ⚑
Cell type- and species-specific regulation of hepatic lncRNAs by TCDD-activated aryl hydrocarbon receptor. PMID 41136526	Sci Rep	2025	71	L1 71/100
E3RC: A step-by-step computational protocol for exploring enhancer RNA expression and regulation using conventional RNA-seq data. PMID 40716058	STAR Protoc	2025	62	L1 62/100
FRMD8 inhibits tumor metastasis in BRCA1-associated TNBC by negatively regulating tmTNF-α. PMID 40619383	Cell Mol Biol Lett	2025	73	L1 73/100
Data-driven projections of candidate enhancer-activating SNPs in immune regulation. PMID 40011812	BMC Genomics	2025	57	L1 57/100
RSK1 is an exploitable dependency in myeloproliferative neoplasms and secondary acute myeloid leukemia. PMID 39820365	Nat Commun	2025	73	L1 73/100
CD14loCD301b+ macrophages gathering as a proangiogenic marker in adipose tissues. PMID 39645040	J Lipid Res	2024	59	L1 59/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection. PMID 39209804	Nat Commun	2024	50	L1 50/100
Intergenic risk variant rs56258221 skews the fate of naive CD4+ T cells via miR4464-BACH2 interplay in primary sclerosing cholangitis PMID 38901430	—	2024	58	L1 58/100
Characterizing Neutrophil Subtypes in Cancer Using scRNA Sequencing Demonstrates the Importance of IL1β/CXCR2 Axis in Generation of Metastasis-specific Neutroph PMID 38358352	Cancer Res Commun	2024	64	L1 64/100
Inflammatory Bone Marrow Mesenchymal Stem Cells in Multiple Myeloma: Transcriptional Signature and In Vitro Modeling. PMID 37958322	Cancers (Basel)	2023	50	L1 50/100
Application of Machine Learning in Predicting Hepatic Metastasis or Primary Site in Gastroenteropancreatic Neuroendocrine Tumors. ⚑ PMID 37887568	Curr Oncol	2023	59	L1 59/100 ⚑
Microglia-containing cerebral organoids derived from induced pluripotent stem cells for the study of neurological diseases. PMID 36936782	iScience	2023	74	L1 74/100
Utilizing the codon adaptation index to evaluate the susceptibility to HIV-1 and SARS-CoV-2 related coronaviruses in possible target cells in humans. PMID 36760235	Front Cell Infect Microbiol	2023	71	L1 71/100
Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism. PMID 36660474	iScience	2022	71	L1 71/100
The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2. PMID 36627412	Cell Mol Life Sci	2023	59	L1 59/100
Comprehensive comparison of gene expression diversity among a variety of human stem cells. PMID 36458020	NAR Genom Bioinform	2022	71	L1 71/100
Modulation of HERV Expression by Four Different Encephalitic Arboviruses during Infection of Human Primary Astrocytes. ⚑ PMID 36423114	Viruses	2022	56	L1 56/100 ⚑
CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons. PMID 36262316	iScience	2022	62	L1 62/100
auts2 Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication. PMID 36078102	Cells	2022	50	L1 50/100
Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution. ⚑ PMID 35977485	Cell Rep	2022	63	L1 63/100 ⚑
Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition. ⚑ PMID 35819852	J Clin Invest	2022	68	L1 68/100 ⚑
Vascular adhesion protein-1 defines a unique subpopulation of human hematopoietic stem cells and regulates their proliferation. PMID 34719737	Cell Mol Life Sci	2021	50	L1 50/100
Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression. PMID 33722289	Genome Biol	2021	66	L1 66/100
Fluent genomics with plyranges and tximeta. PMID 32528659	F1000Res	2020	69	L1 69/100
Core transcriptional signatures of phase change in the migratory locust. ⚑ PMID 31292921	Protein Cell	2019	60	L1 60/100 ⚑
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100