Explore
← New search
69 matching publication(s)
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.
PMID 42172220 · PLoS One · 2026
L1
63/100
Identification of key genes in chickpea transcriptomics and the development of ChickpeaOmicsR as a comprehensive resource to advance breeding and genomic studie⚑
PMID 41909810 · Front Bioinform · 2026
L1
56/100
⚑
Integrated multi-omics analysis combined with clinical validation reveals that HLA-DRB5 and ODAPH are causal risk genes for keratoconus.
PMID 41803193 · Sci Rep · 2026
L1
64/100
Population structure analysis of Salmonella serovar Muenchen to redefine geno-serotyping using genome indexing approaches.⚑
PMID 41743541 · Front Microbiol · 2026
L1
54/100
⚑
huSA: a comprehensive database for multi-dimensional resolution of bulk, single cell and spatial transcription profiles in skin diseases.
PMID 41719583 · Database (Oxford) · 2026
L1
50/100
Enhancing cell subpopulation discovery in cancer by integrating single-cell transcriptome and expressed variants.
PMID 41647537 · Fundam Res · 2025
L1
68/100
Integrative analysis of transcriptomic data reveals a predictive gene signature for chemoradiotherapy response in rectal cancer.
PMID 41550766 · iScience · 2025
L1
50/100
Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni).
PMID 41490125 · PLoS One · 2026
L1
69/100
iceDP: identifying inter-chromatin engagement via density peaks clustering algorithm.⚑
PMID 41499218 · Brief Bioinform · 2026
L1
53/100
⚑
ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.⚑
PMID 41263110 · Nucleic Acids Res · 2026
L1
73/100
⚑
Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material.
PMID 41029822 · J Transl Med · 2025
L1
67/100
Interpretable and integrative analysis of single-cell multiomics with scMKL.
PMID 40770488 · Commun Biol · 2025
L1
65/100
Comprehensive bioinformatics analysis and experimental verification identify mitochondrial gene Dgat2 as a novel therapeutic biomarker for myocardial ischemia-r
PMID 40510478 · Front Endocrinol (Lausanne) · 2025
L1
64/100
scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification.
PMID 40501071 · Brief Bioinform · 2025
L1
62/100
Data-driven projections of candidate enhancer-activating SNPs in immune regulation.
PMID 40011812 · BMC Genomics · 2025
L1
57/100
Identification and validation of a metabolic-related gene risk model predicting the prognosis of lung, colon, and breast cancers.
PMID 39779736 · Sci Rep · 2025
L1
74/100
CD14loCD301b+ macrophages gathering as a proangiogenic marker in adipose tissues.
PMID 39645040 · J Lipid Res · 2024
L1
59/100
RummaGEO: Automatic mining of human and mouse gene sets from GEO.
PMID 39569206 · Patterns (N Y) · 2024
L1
63/100
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation.
PMID 39549198 · Geroscience · 2024
L1
54/100
A comparative analysis of blastoid models through single-cell transcriptomics.
PMID 39524369 · iScience · 2024
L1
60/100
Exploring the prognostic and diagnostic value of lactylation-related genes in sepsis.
PMID 39367086 · Sci Rep · 2024
L1
73/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
L1
63/100
Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter.
PMID 38587191 · Nucleic Acids Res · 2024
L1
68/100
Identification of the shared hub gene signatures and molecular mechanisms between HIV-1 and pulmonary arterial hypertension.
PMID 38528047 · Sci Rep · 2024
L1
71/100
Gbdmr: identifying differentially methylated CpG regions in the human genome via generalized beta regressions.⚑
PMID 38443825 · BMC Bioinformatics · 2024
L1
62/100
⚑
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy.
PMID 38352867 · Front Immunol · 2024
L1
73/100
Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage.
PMID 38295140 · PLoS One · 2024
L1
71/100
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach.
PMID 38253993 · BMC Bioinformatics · 2024
59/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data.
PMID 37994351 · F1000Res · 2023
L1
67/100
HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD).
PMID 37907883 · BMC Med Genomics · 2023
L1
67/100
Identification and verification of diagnostic biomarkers in recurrent pregnancy loss via machine learning algorithm and WGCNA.⚑
PMID 37691920 · Front Immunol · 2023
L1
55/100
⚑
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data.
PMID 37478378 · Brief Bioinform · 2023
L1
60/100
Cell-type annotation with accurate unseen cell-type identification using multiple references.
PMID 37379341 · PLoS Comput Biol · 2023
L1
68/100
A global database for modeling tumor-immune cell communication.
PMID 37438390 · Sci Data · 2023
L1
66/100
Detecting aberrant DNA methylation in Illumina DNA methylation arrays: a toolbox and recommendations for its use.
PMID 37218167 · Epigenetics · 2023
L2
73/100
VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.
PMID 37180100 · Front Immunol · 2023
L1
64/100
Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature.
PMID 37076665 · NPJ Precis Oncol · 2023
L1
50/100
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis.⚑
PMID 36725967 · Sci Rep · 2023
L1
74/100
⚑
Artificial intelligence-guided discovery of gastric cancer continuum.
PMID 36692601 · Gastric Cancer · 2023
L1
71/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
L1
67/100
Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers.
PMID 36440209 · Front Endocrinol (Lausanne) · 2022
L1
50/100
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.⚑
PMID 36321549 · Mol Syst Biol · 2022
L1
53/100
⚑
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo.
PMID 35784648 · Cell Rep Methods · 2022
L1
66/100
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
PMID 35494238 · iScience · 2022
L1
60/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
PMID 34927097 · STAR Protoc · 2021
L1
50/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
L1
69/100
⚑
Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA
PMID 34547062 · Vavilovskii Zhurnal Genet Selektsii · 2021
L1
62/100
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
PMID 34426512 · Genome Res · 2021
L1
57/100
Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis.⚑
PMID 34335581 · Front Immunol · 2021
L1
63/100
⚑