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199 matching publication(s)
Leveraging RNA-seq deconvolution to improve complex in vitro model characterization.
PMID 40701251 · J Biol Chem · 2025
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Environmental Drivers of Genetic Divergence in Two Corals From the Florida Keys.
PMID 40589611 · Evol Appl · 2025
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IL-6 trans-Signaling Regulates Neutrophilic Inflammation in Alcohol-Associated Hepatitis.
PMID 40562277 · Am J Pathol · 2025
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COVID-19 vaccination atlas using an integrative systems vaccinology approach.
PMID 40456760 · NPJ Vaccines · 2025
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MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic⚑
PMID 40450001 · Nat Commun · 2025
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The motor neuron m6A repertoire governs neuronal homeostasis and FTO inhibition mitigates ALS symptom manifestation.⚑
PMID 40307231 · Nat Commun · 2025
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Constraints to gene flow increase the risk of genome erosion in the Ngorongoro Crater lion population.
PMID 40258987 · Commun Biol · 2025
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Chemical genomics informs antibiotic and essential gene function in Acinetobacter baumannii.
PMID 40153700 · PLoS Genet · 2025
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Data-driven projections of candidate enhancer-activating SNPs in immune regulation.
PMID 40011812 · BMC Genomics · 2025
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Patient-Derived Meningioma Organoids: A Reliable Model for Studying Human Tumor Pathophysiology.
PMID 39941893 · Cancers (Basel) · 2025
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RSK1 is an exploitable dependency in myeloproliferative neoplasms and secondary acute myeloid leukemia.
PMID 39820365 · Nat Commun · 2025
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Revealing an unexpectedly low electron injection threshold via reinforced shock acceleration.
PMID 39805850 · Nat Commun · 2025
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Metabolic features that select for Bathyarchaeia in modern ferruginous lacustrine subsurface sediments.
PMID 39660009 · ISME Commun · 2024
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Differential bone morphology and hypoxia activity in skeletal metastases of ER+ and ER- breast cancer.
PMID 39572705 · Commun Biol · 2024
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RummaGEO: Automatic mining of human and mouse gene sets from GEO.
PMID 39569206 · Patterns (N Y) · 2024
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The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation.
PMID 39549198 · Geroscience · 2024
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Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection.
PMID 39209804 · Nat Commun · 2024
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Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers.
PMID 39183332 · Cell Death Dis · 2024
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Integrated drug resistance and leukemic stemness gene-expression scores predict outcomes in large cohort of over 3500 AML patients from 10 trials.
PMID 39090192 · NPJ Precis Oncol · 2024
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SGCP: a spectral self-learning method for clustering genes in co-expression networks.⚑
PMID 38956463 · BMC Bioinformatics · 2024
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The manganese transporter SLC39A8 links alkaline ceramidase 1 to inflammatory bowel disease.⚑
PMID 38839750 · Nat Commun · 2024
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The molecular landscape of sepsis severity in infants: enhanced coagulation, innate immunity, and T cell repression.
PMID 38817614 · Front Immunol · 2024
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The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection.
PMID 38537644 · Cell Rep · 2024
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Gbdmr: identifying differentially methylated CpG regions in the human genome via generalized beta regressions.⚑
PMID 38443825 · BMC Bioinformatics · 2024
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The identification of a Distinct Astrocyte Subtype that Diminishes in Alzheimer's Disease.
PMID 38502590 · Aging Dis · 2024
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Ion-Scale Magnetic Flux Rope Generated From Electron-Scale Magnetopause Current Sheet: Magnetospheric Multiscale Observations.
PMID 38440152 · J Geophys Res Space Phys · 2023
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Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy.
PMID 38352867 · Front Immunol · 2024
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Responses of peritubular macrophages and the testis transcriptome profiles of peripubertal and adult rodents exposed to an acute dose of MEHP.⚑
PMID 38113427 · Toxicol Sci · 2024
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Inflammatory Bone Marrow Mesenchymal Stem Cells in Multiple Myeloma: Transcriptional Signature and In Vitro Modeling.
PMID 37958322 · Cancers (Basel) · 2023
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Identification of herpesvirus transcripts from genomic regions around the replication origins.
PMID 37773348 · Sci Rep · 2023
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Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection.
PMID 37572656 · Immunity · 2023
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Clinical and molecular correlation defines activity of physiological pathways in life-sustaining kidney xenotransplantation.
PMID 37311769 · Nat Commun · 2023
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VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.
PMID 37180100 · Front Immunol · 2023
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Metapangenomics of wild and cultivated banana microbiome reveals a plethora of host-associated protective functions.⚑
PMID 37085932 · Environ Microbiome · 2023
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Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature.
PMID 37076665 · NPJ Precis Oncol · 2023
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Microglia-containing cerebral organoids derived from induced pluripotent stem cells for the study of neurological diseases.
PMID 36936782 · iScience · 2023
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Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.⚑
PMID 36925474 · Front Microbiol · 2023
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Evaluating native-like structures of RNA-protein complexes through the deep learning method.
PMID 36828844 · Nat Commun · 2023
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polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies.
PMID 36792366 · Genome Biol Evol · 2023
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Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.
PMID 36721781 · PeerJ · 2023
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High-resolution metagenomic reconstruction of the freshwater spring bloom.
PMID 36698172 · Microbiome · 2023
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Artificial intelligence-guided discovery of gastric cancer continuum.
PMID 36692601 · Gastric Cancer · 2023
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Population Genomic Analyses Suggest a Hybrid Origin, Cryptic Sexuality, and Decay of Genes Regulating Seed Development for the Putatively Strictly Asexual Ki⚑
PMID 36674965 · Int J Mol Sci · 2023
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The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2.
PMID 36627412 · Cell Mol Life Sci · 2023
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An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
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Autoencoder Networks Decipher the Association between Lung Cancer and Alzheimer's Disease.
PMID 36518809 · Comput Intell Neurosci · 2022
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Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
PMID 36450752 · Nat Commun · 2022
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Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection.
PMID 36450262 · Cell Rep · 2022
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