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62 matching publication(s)
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.
PMID 25202605 · Appl Plant Sci · 2014
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87/100
Genetic analysis of Leishmania donovani tropism using a naturally attenuated cutaneous strain.
PMID 24992200 · PLoS Pathog · 2014
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63/100
Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity.
PMID 23326238 · PLoS Genet · 2013
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49/100
oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets.⚑
PMID 22973536 · G3 (Bethesda) · 2012
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49/100
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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
PMID 22955991 · Genome Res · 2012
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74/100
Spatial transcriptomics reveals the molecular signatures of prodromal and advanced α-synucleinopathy.
PMID 41736854 · iScience · 2026
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70/100
Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni).
PMID 41490125 · PLoS One · 2026
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69/100
Plasmid transmission dynamics and evolution of partner quality in a natural population of Rhizobium leguminosarum.
PMID 41212030 · mBio · 2025
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86/100
Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material.
PMID 41029822 · J Transl Med · 2025
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67/100
Transcriptome-Proteome Profiling in Burkholderia thailandensis during the Transition from Exponential to Stationary Phase.
PMID 40680064 · J Proteome Res · 2025
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80/100
A haplotype-resolved genome assembly of the bocaccio rockfish, Sebastes paucispinis.
PMID 40323688 · J Hered · 2025
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99/100
Streaming Long-Read Sequence Alignments for HLA Predictions Using HLAminer.
PMID 40145684 · Curr Protoc · 2025
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90/100
7SL RNA and signal recognition particle orchestrate a global cellular response to acute thermal stress.
PMID 39952919 · Nat Commun · 2025
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93/100
Recruitment of the m6A/m6Am demethylase FTO to target RNAs by the telomeric zinc finger protein ZBTB48.
PMID 39300486 · Genome Biol · 2024
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78/100
Advanced Methods for Analyzing in-Situ Observations of Magnetic Reconnection.
PMID 39234211 · Space Sci Rev · 2024
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No computation
Integrated drug resistance and leukemic stemness gene-expression scores predict outcomes in large cohort of over 3500 AML patients from 10 trials.
PMID 39090192 · NPJ Precis Oncol · 2024
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50/100
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin
PMID 38860884 · Microb Genom · 2024
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75/100
Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter.
PMID 38587191 · Nucleic Acids Res · 2024
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68/100
Cross-species comparative hippocampal transcriptomics in Alzheimer's disease.
PMID 38292167 · iScience · 2023
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75/100
Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists.
PMID 37906287 · J Clin Invest · 2024
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95/100
Complete human day 14 post-implantation embryo models from naive ES cells.
PMID 37673118 · Nature · 2023
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100/100
FAM3C/ILEI protein is elevated in psoriatic lesions and triggers psoriasiform hyperproliferation in mice.
PMID 37226685 · EMBO Mol Med · 2023
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83/100
Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expres
PMID 37216666 · G3 (Bethesda) · 2023
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86/100
Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton.⚑
PMID 37098087 · PLoS One · 2023
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38/100
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Genomic insight into the influence of selection, crossbreeding, and geography on population structure in poultry.
PMID 36670351 · Genet Sel Evol · 2023
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100/100
annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.
PMID 36472574 · Gigascience · 2022
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78/100
MirDIP 5.2: tissue context annotation and novel microRNA curation.
PMID 36453996 · Nucleic Acids Res · 2023
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89/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
PMID 36450752 · Nat Commun · 2022
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70/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
PMID 36262335 · F1000Res · 2022
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59/100
OSeMOSYS Global, an open-source, open data global electricity system model generator.
PMID 36241673 · Sci Data · 2022
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80/100
Estimating biodiversity across the tree of life on Mount Everest's southern flank with environmental DNA.
PMID 36148432 · iScience · 2022
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65/100
Whole-Genome Sequence of Cervid atadenovirus A from the Initial Cases of an Adenovirus Hemorrhagic Disease Epizootic of Black-Tailed Deer in Canada.
PMID 36129291 · Microbiol Resour Announc · 2022
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81/100
Analyzing biomarker discovery: Estimating the reproducibility of biomarker sets.
PMID 35901020 · PLoS One · 2022
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83/100
Transcriptional regulation and chromatin architecture maintenance are decoupled functions at the Sox2 locus.
PMID 35710138 · Genes Dev · 2022
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81/100
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.⚑
PMID 35584008 · Microb Genom · 2022
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61/100
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Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States.
PMID 35269470 · Cells · 2022
L2
88/100
Identification of new ETV6 modulators through a high-throughput functional screening.
PMID 35198911 · iScience · 2022
68/100
GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring.
PMID 35087491 · Front Microbiol · 2022
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50/100
Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight.
PMID 35028613 · Cell Rep Med · 2021
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75/100
The formation of avian montane diversity across barriers and along elevational gradients.
PMID 35022441 · Nat Commun · 2022
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75/100
Phase transition specified by a binary code patterns the vertebrate eye cup.
PMID 34757798 · Sci Adv · 2021
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74/100
Bioavailable Nutrients (N and P) and Precipitation Patterns Drive Cyanobacterial Blooms in Missisquoi Bay, Lake Champlain.
PMID 34683418 · Microorganisms · 2021
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67/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
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69/100
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Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.
PMID 34411106 · PLoS Genet · 2021
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No data access
eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
PMID 34019643 · Nucleic Acids Res · 2021
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82/100
The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols.
PMID 33978761 · Nucleic Acids Res · 2021
L1
No computation
Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data.
PMID 33746712 · Front Mol Neurosci · 2021
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50/100
Curation of over 10 000 transcriptomic studies to enable data reuse.
PMID 33599246 · Database (Oxford) · 2021
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80/100
4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.
PMID 33301041 · Nucleic Acids Res · 2020
L1
78/100