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150 matching publication(s)
OptiType: precision HLA typing from next-generation sequencing data.
PMID 25143287 · Bioinformatics · 2014
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Cyrface: An interface from Cytoscape to R that provides a user interface to R packages.
PMID 24715956 · F1000Res · 2013
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A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.
PMID 23496952 · BMC Genomics · 2013
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The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PMID 24068976 · PLoS Genet · 2013
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Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle.
PMID 32523568 · Front Microbiol · 2020
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Taxonomic and functional partitioning of Chloroflexota populations under ferruginous conditions at and below the sediment-water interface.
PMID 39384533 · FEMS Microbiol Ecol · 2024
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The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements.
PMID 21857667 · Nat Cell Biol · 2011
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Extensive variation between chromosomes of North American and European hop.
PMID 42204144 · Nat Commun · 2026
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An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity.
PMID 42147490 · Cell Press Blue · 2026
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Prognostic biomarker discovery in pancreatic cancer through hybrid ensemble feature selection and multi-omics data.
PMID 41957754 · BioData Min · 2026
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A comparative study on recombination activity in cattle.
PMID 41942849 · Genet Sel Evol · 2026
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Prediction, syntax and semantic grounding in the brain and large language models.
PMID 41807493 · Sci Rep · 2026
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Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk.
PMID 41796334 · Genome Biol · 2026
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ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries.
PMID 41790830 · PLoS Comput Biol · 2026
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The first single-stranded DNA virus targeting Pectobacterium belongs to the family Microviridae and demonstrates a broad host range to Pectobacterium brasiliens
PMID 41739249 · Arch Virol · 2026
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MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery.⚑
PMID 41729821 · Brief Bioinform · 2026
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Comparative Genome Analysis of 16SrXII-A 'Candidatus Phytoplasma solani' POT Transmitted by Hyalesthes obsoletus.
PMID 41597744 · Microorganisms · 2026
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Distinct sympathetic projections to brown fat regulate thermogenesis and glucose tolerance.
PMID 41559445 · Nat Metab · 2026
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The cotranslational cycle of the ribosome-bound Hsp70 homolog Ssb.
PMID 41545346 · Nat Commun · 2026
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Integrated analysis of post-transcriptional regulations reveals insights into acute myeloid leukemia.⚑
PMID 41407883 · Commun Biol · 2025
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Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets.
PMID 41226816 · Int J Mol Sci · 2025
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Allele-specific immune gene quantification and expression analysis in single-cell RNA-seq data.
PMID 41229397 · NAR Genom Bioinform · 2025
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Recombination events restored the functional horned haplotypes in the offspring of polled parents.
PMID 41174470 · Genet Sel Evol · 2025
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Distinct senotypes in p16- and p21-positive cells across human and mouse aging tissues.
PMID 41162753 · EMBO J · 2025
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Age Deceleration and Reversal Gene Patterns in Dauer Diapause.
PMID 41104926 · Aging Cell · 2025
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Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation.
PMID 41039608 · Genome Med · 2025
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Single-nucleus mRNA-sequencing reveals dynamics of lipogenic and thermogenic adipocyte populations in murine brown adipose tissue in response to cold exposure.
PMID 40945691 · Mol Metab · 2025
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A blood-based DNA damage signature in patients with Parkinson's disease is associated with disease progression.
PMID 40913219 · Nat Aging · 2025
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Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals.
PMID 40922549 · Elife · 2025
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Multi-omic identification of perineurial hyperplasia and lipid-associated nerve macrophages in human polyneuropathies.
PMID 40849297 · Nat Commun · 2025
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Single-cell RNA-sequencing highlights a curtailed NK cell function in convalescent COVID-19 pregnant women.
PMID 40661959 · Front Immunol · 2025
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Temporal control of progenitor competence shapes maturation in GABAergic neuron development in mice.
PMID 40629142 · Nat Neurosci · 2025
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Author Correction: Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
PMID 40555819 · Nature Genetics (Author Correction 2025; orig 2024;56:1644) · 2025
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An engineered tumor organoid model reveals cellular identity and signaling trajectories underlying SFPQ-TFE3 driven translocation RCC.
PMID 40463960 · iScience · 2025
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MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic⚑
PMID 40450001 · Nat Commun · 2025
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Covalent binding of thioredoxin to TXNIP is required for diet-induced insulin resistance in the liver.
PMID 40345590 · J Biol Chem · 2025
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Chemical genomics informs antibiotic and essential gene function in Acinetobacter baumannii.
PMID 40153700 · PLoS Genet · 2025
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A single-cell compendium of human cerebrospinal fluid identifies disease-associated immune cell populations.
PMID 39744938 · J Clin Invest · 2025
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Metabolic features that select for Bathyarchaeia in modern ferruginous lacustrine subsurface sediments.
PMID 39660009 · ISME Commun · 2024
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NK2R control of energy expenditure and feeding to treat metabolic diseases.
PMID 39537932 · Nature · 2024
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Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection.
PMID 39209804 · Nat Commun · 2024
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Integrated drug resistance and leukemic stemness gene-expression scores predict outcomes in large cohort of over 3500 AML patients from 10 trials.
PMID 39090192 · NPJ Precis Oncol · 2024
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Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findi
PMID 39039281 · Nat Genet · 2024
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Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance.⚑
PMID 39009986 · Genet Sel Evol · 2024
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A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.
PMID 38638702 · NAR Genom Bioinform · 2024
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Characterizing Neutrophil Subtypes in Cancer Using scRNA Sequencing Demonstrates the Importance of IL1β/CXCR2 Axis in Generation of Metastasis-specific Neutroph
PMID 38358352 · Cancer Res Commun · 2024
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