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Exploring microproteins from various model organisms using the mip-mining database.
PMID 37919660 · BMC Genomics · 2023
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85/100
Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists.
PMID 37906287 · J Clin Invest · 2024
L1
95/100
Identification of herpesvirus transcripts from genomic regions around the replication origins.
PMID 37773348 · Sci Rep · 2023
L1
59/100
Lineage commitment of dermal fibroblast progenitors is controlled by Kdm6b-mediated chromatin demethylation.
PMID 37602956 · EMBO J · 2023
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91/100
Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation.
PMID 37652021 · Immunity · 2023
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83/100
spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes.
PMID 37602419 · Nucleic Acids Res · 2023
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77/100
Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection.
PMID 37572656 · Immunity · 2023
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68/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets.
PMID 37563310 · Nat Immunol · 2023
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93/100
Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment.
PMID 37471455 · PLoS Comput Biol · 2023
L1
100/100
Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles.
PMID 37444556 · Cancers (Basel) · 2023
L1
90/100
Clinical and molecular correlation defines activity of physiological pathways in life-sustaining kidney xenotransplantation.
PMID 37311769 · Nat Commun · 2023
L1
69/100
Generation of LexA enhancer-trap lines in Drosophila by an international scholastic network.
PMID 37279923 · G3 (Bethesda) · 2023
94/100
Detecting aberrant DNA methylation in Illumina DNA methylation arrays: a toolbox and recommendations for its use.
PMID 37218167 · Epigenetics · 2023
L2
73/100
PD-1 blockade potentiates neoadjuvant chemotherapy in NSCLC via increasing CD127+ and KLRG1+ CD8 T cells.
PMID 37231145 · NPJ Precis Oncol · 2023
L1
40/100
TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes.
PMID 37200521 · Chem Res Toxicol · 2023
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84/100
Intrinsic suppression of type I interferon production underlies the therapeutic efficacy of IL-15-producing natural killer cells in B-cell acute lymphoblastic l
PMID 37217248 · J Immunother Cancer · 2023
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76/100
VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.
PMID 37180100 · Front Immunol · 2023
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64/100
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection i
PMID 37133905 · Microb Genom · 2023
L1
92/100
On the holobiont 'predictome' of immunocompetence in pigs.⚑
PMID 37127575 · Genet Sel Evol · 2023
L1
40/100
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Single duplex DNA sequencing with CODEC detects mutations with high sensitivity.
PMID 37106072 · Nat Genet · 2023
L1
78/100
Metapangenomics of wild and cultivated banana microbiome reveals a plethora of host-associated protective functions.⚑
PMID 37085932 · Environ Microbiome · 2023
L1
59/100
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Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature.
PMID 37076665 · NPJ Precis Oncol · 2023
L1
50/100
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes.
PMID 37032329 · Microbiome · 2023
L1
89/100
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection.
PMID 37027361 · PLoS One · 2023
L1
86/100
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.
PMID 37016291 · BMC Bioinformatics · 2023
L1
95/100
iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr
PMID 37023414 · Cancer Immunol Res · 2023
L1
94/100
Chemical and genomic characterization of a potential probiotic treatment for stony coral tissue loss disease.
PMID 37024599 · Commun Biol · 2023
L1
85/100
Niche Modification by Sulfate-Reducing Bacteria Drives Microbial Community Assembly in Anoxic Marine Sediments.
PMID 36988509 · mBio · 2023
L1
100/100
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.
PMID 37012480 · Nat Methods · 2023
L1
90/100
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
PMID 36928603 · Nat Genet · 2023
L1
80/100
Microglia-containing cerebral organoids derived from induced pluripotent stem cells for the study of neurological diseases.
PMID 36936782 · iScience · 2023
L1
74/100
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.⚑
PMID 36925474 · Front Microbiol · 2023
L1
74/100
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Unlocking the microbial studies through computational approaches: how far have we reached?
PMID 36920617 · Environ Sci Pollut Res Int · 2023
L1
No computation
Insights into the differentiation and adaptation within Circaeasteraceae from Circaeaster agrestis genome sequencing and resequencing.⚑
PMID 36895650 · iScience · 2023
L1
49/100
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Assessing the impacts of COVID-19 vaccination programme's timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African coun
PMID 36882868 · BMC Med · 2023
L1
89/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer.
PMID 36851919 · Comput Struct Biotechnol J · 2023
L2
78/100
Evaluating native-like structures of RNA-protein complexes through the deep learning method.
PMID 36828844 · Nat Commun · 2023
L1
67/100
Enteroendocrine cell lineages that differentially control feeding and gut motility.
PMID 36810133 · Elife · 2023
L1
88/100
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond.
PMID 36828587 · Genome Res · 2023
L1
No computation
polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies.
PMID 36792366 · Genome Biol Evol · 2023
L1
71/100
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.
PMID 36752777 · Microb Genom · 2023
L1
89/100
Transcriptome-wide analyses of piRNA binding sites suggest distinct mechanisms regulate piRNA binding and silencing in C. elegans.
PMID 36737102 · RNA · 2023
L1
88/100
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
PMID 36719906 · PLoS Comput Biol · 2023
L1
98/100
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples.
PMID 36721781 · PeerJ · 2023
L1
50/100
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
PMID 36699347 · Bioinform Adv · 2022
L1
78/100
High-resolution metagenomic reconstruction of the freshwater spring bloom.
PMID 36698172 · Microbiome · 2023
L1
69/100
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution.
PMID 36696508 · Sci Adv · 2023
L2
50/100
A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients.
PMID 36694043 · Commun Biol · 2023
L1
83/100
Artificial intelligence-guided discovery of gastric cancer continuum.
PMID 36692601 · Gastric Cancer · 2023
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71/100
Population Genomic Analyses Suggest a Hybrid Origin, Cryptic Sexuality, and Decay of Genes Regulating Seed Development for the Putatively Strictly Asexual Ki⚑
PMID 36674965 · Int J Mol Sci · 2023
51/100
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