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1196 matching publication(s)
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing.
PMID 37129547 · Bioinformatics · 2023
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83/100
On the holobiont 'predictome' of immunocompetence in pigs.⚑
PMID 37127575 · Genet Sel Evol · 2023
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40/100
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Single duplex DNA sequencing with CODEC detects mutations with high sensitivity.
PMID 37106072 · Nat Genet · 2023
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78/100
Comprehensive analysis of a novel RNA modifications-related model in the prognostic characterization, immune landscape and drug therapy of bladder cancer.
PMID 37124622 · Front Genet · 2023
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71/100
Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton.⚑
PMID 37098087 · PLoS One · 2023
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38/100
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Metagenomic and Untargeted Metabolomic Analysis of the Effect of Sporisorium reilianum Polysaccharide on Improving Obesity.
PMID 37107373 · Foods · 2023
L2
No data access
Predicting the pathogenicity of missense variants using features derived from AlphaFold2.
PMID 37084271 · Bioinformatics · 2023
L1
85/100
Metapangenomics of wild and cultivated banana microbiome reveals a plethora of host-associated protective functions.⚑
PMID 37085932 · Environ Microbiome · 2023
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59/100
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Different approaches to Imaging Mass Cytometry data analysis.
PMID 37092034 · Bioinform Adv · 2023
L1
No computation
Clustering and machine learning-based integration identify cancer associated fibroblasts genes' signature in head and neck squamous cell carcinoma.
PMID 37065499 · Front Genet · 2023
L1
63/100
Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature.
PMID 37076665 · NPJ Precis Oncol · 2023
L1
50/100
Orthogonal cytokine engineering enables novel synthetic effector states escaping canonical exhaustion in tumor-rejecting CD8+ T cells.
PMID 37081150 · Nat Immunol · 2023
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37/100
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes.
PMID 37032329 · Microbiome · 2023
L1
89/100
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection.
PMID 37027361 · PLoS One · 2023
L1
86/100
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.
PMID 37016291 · BMC Bioinformatics · 2023
L1
95/100
iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr
PMID 37023414 · Cancer Immunol Res · 2023
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94/100
Chemical and genomic characterization of a potential probiotic treatment for stony coral tissue loss disease.
PMID 37024599 · Commun Biol · 2023
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85/100
TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.
PMID 37013657 · Genome Biol · 2023
L1
89/100
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism.
PMID 37013995 · Nucleic Acids Res · 2023
L1
72/100
Niche Modification by Sulfate-Reducing Bacteria Drives Microbial Community Assembly in Anoxic Marine Sediments.
PMID 36988509 · mBio · 2023
L1
100/100
Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart.
PMID 37012284 · Sci Rep · 2023
L2
90/100
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.
PMID 37012480 · Nat Methods · 2023
L1
90/100
nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing.
PMID 36961337 · Bioinformatics · 2023
L1
88/100
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
PMID 36928603 · Nat Genet · 2023
L1
80/100
Microglia-containing cerebral organoids derived from induced pluripotent stem cells for the study of neurological diseases.
PMID 36936782 · iScience · 2023
L1
74/100
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.⚑
PMID 36925474 · Front Microbiol · 2023
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74/100
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Unlocking the microbial studies through computational approaches: how far have we reached?
PMID 36920617 · Environ Sci Pollut Res Int · 2023
L1
No computation
Online Learning for Wearable EEG-Based Emotion Classification.
PMID 36904590 · Sensors (Basel) · 2023
L1
No data access
An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping.
PMID 36891809 · G3 (Bethesda) · 2023
L1
90/100
Insights into the differentiation and adaptation within Circaeasteraceae from Circaeaster agrestis genome sequencing and resequencing.⚑
PMID 36895650 · iScience · 2023
L1
49/100
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Assessing the impacts of COVID-19 vaccination programme's timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African coun
PMID 36882868 · BMC Med · 2023
L1
89/100
Widespread allele-specific topological domains in the human genome are not confined to imprinted gene clusters.
PMID 36869353 · Genome Biol · 2023
L1
64/100
Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and diver
PMID 36864379 · Genet Sel Evol · 2023
L2
100/100
Bulk and single-cell characterisation of the immune heterogeneity of atherosclerosis identifies novel targets for immunotherapy.
PMID 36855107 · BMC Biol · 2023
L2
70/100
Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network.
PMID 36855106 · BMC Med Genomics · 2023
L2
86/100
Shifts from cooperative to individual-based predation defense determine microbial predator-prey dynamics.
PMID 36854789 · ISME J · 2023
L1
84/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer.
PMID 36851919 · Comput Struct Biotechnol J · 2023
L2
78/100
Gene Regulatory Interactions at Lamina-Associated Domains.⚑
PMID 36833261 · Genes (Basel) · 2023
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31/100
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Evaluating native-like structures of RNA-protein complexes through the deep learning method.
PMID 36828844 · Nat Commun · 2023
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67/100
Enteroendocrine cell lineages that differentially control feeding and gut motility.
PMID 36810133 · Elife · 2023
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88/100
Social complexity, life-history and lineage influence the molecular basis of castes in vespid wasps.⚑
PMID 36828829 · Nat Commun · 2023
L1
52/100
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Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.
PMID 36810800 · Gigascience · 2022
L1
50/100
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond.
PMID 36828587 · Genome Res · 2023
L1
No computation
GSDME-mediated pyroptosis promotes the progression and associated inflammation of atherosclerosis.
PMID 36807553 · Nat Commun · 2023
85/100
Enabling Single-Cell Drug Response Annotations from Bulk RNA-Seq Using SCAD.
PMID 36762572 · Adv Sci (Weinh) · 2023
L1
81/100
Utilizing the codon adaptation index to evaluate the susceptibility to HIV-1 and SARS-CoV-2 related coronaviruses in possible target cells in humans.
PMID 36760235 · Front Cell Infect Microbiol · 2023
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71/100
polishCLR: A Nextflow Workflow for Polishing PacBio CLR Genome Assemblies.
PMID 36792366 · Genome Biol Evol · 2023
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71/100
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.
PMID 36752777 · Microb Genom · 2023
L1
89/100
Transcriptome-wide analyses of piRNA binding sites suggest distinct mechanisms regulate piRNA binding and silencing in C. elegans.
PMID 36737102 · RNA · 2023
L1
88/100