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26 matching publication(s)

Publication	Journal	Year	Score	Verdict
Ecotype diversity and conversion in Photobacterium profundum strains. PMID 24824441	PLoS One	2014	77	L1 77/100
A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum. ⚑ PMID 25392735	Gigascience	2014	61	L1 61/100 ⚑
An extensive evaluation of read trimming effects on Illumina NGS data analysis. PMID 24376861	PLoS One	2013	85	L1 85/100
Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation. PMID 41039608	Genome Med	2025	100	L1 100/100
A blood-based DNA damage signature in patients with Parkinson's disease is associated with disease progression. PMID 40913219	Nat Aging	2025	69	L1 69/100
MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic ⚑ PMID 40450001	Nat Commun	2025	70	L1 70/100 ⚑
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation. PMID 39549198	Geroscience	2024	54	L1 54/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection. PMID 39209804	Nat Commun	2024	50	L1 50/100
Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning. ⚑ PMID 36611079	NPJ Precis Oncol	2023	—	L1 No data access ⚑
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential. PMID 36450752	Nat Commun	2022	70	L1 70/100
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome. PMID 34561431	Nat Commun	2021	100	L1 100/100
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. PMID 34082707	BMC Bioinformatics	2021	85	L1 85/100
Diapause vs. reproductive programs: transcriptional phenotypes in a keystone copepod. ⚑ PMID 33782539	Commun Biol	2021	57	L1 57/100 ⚑
Circulating mucosal-associated invariant T cells identify patients responding to anti-PD-1 therapy. PMID 33723257	Nat Commun	2021	70	L1 70/100
TFEB deficiency attenuates mitochondrial degradation upon brown adipose tissue whitening at thermoneutrality PMID 33516944	Molecular Metabolism 47:101173	2021	—	L1 No computation
Interaction between SNAI2 and MYOD enhances oncogenesis and suppresses differentiation in Fusion Negative Rhabdomyosarcoma. PMID 33420019	Nat Commun	2021	50	50/100
In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age. PMID 32898168	PLoS Biol	2020	89	L1 89/100
PulmonDB: a curated lung disease gene expression database. ⚑ PMID 31949184	Sci Rep	2020	53	L1 53/100 ⚑
Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma. ⚑ PMID 31784732	Nat Genet	2019	58	58/100 ⚑
CRISPR/Cas9 Screens Reveal Multiple Layers of B cell CD40 Regulation. PMID 31365872	Cell Rep	2019	—	L1 No data access
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. ⚑ PMID 30691411	BMC Bioinformatics	2019	30	L1 30/100 ⚑
Trans-ethnic association study of blood pressure determinants in over 750,000 individuals. PMID 30578418	Nat Genet	2018	—	L1 No data access
The role of the multidisciplinary health care team in the management of patients with Marfan syndrome. PMID 27843325	—	2016	—	L1 No computation
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. PMID 18834967	—	2008	70	L1 70/100