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43 matching publication(s)

Publication	Journal	Year	Score	Verdict
Celline: a flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data. PMID 41458999	Front Bioinform	2025	64	L1 64/100
eDNAmap: A Metabarcoding Web Tool for Comparing Marine Biodiversity, With Special Reference to Teleost Fish. PMID 41189540	Mol Ecol Resour	2025	59	L1 59/100
H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D genome integrity. ⚑ PMID 40764058	Genome Res	2025	55	L1 55/100 ⚑
Artificial Intelligence Approach in Machine Learning-Based Modeling and Networking of the Coronavirus Pathogenesis Pathway. PMID 40699865	Curr Issues Mol Biol	2025	—	L1 No data access
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility. PMID 40106407	PLoS Genet	2025	95	L1 95/100
IRSN-23 gene diagnosis enhances breast cancer subtype classification and predicts response to neoadjuvant chemotherapy: new validation analyses. PMID 40128415	Breast Cancer	2025	71	L1 71/100
Direct observations of cross-scale wave-particle energy transfer in space plasmas. PMID 39919183	Sci Adv	2025	94	94/100
Comprehensive data for studying serum exosome microRNA transcriptome in Parkinson's disease patients. PMID 39406833	Sci Data	2024	100	L1 100/100
Advanced Methods for Analyzing in-Situ Observations of Magnetic Reconnection. PMID 39234211	Space Sci Rev	2024	—	L1 No computation
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection. PMID 39209804	Nat Commun	2024	50	L1 50/100
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images. PMID 38539106	BMC Bioinformatics	2024	77	L1 77/100
Ion-Scale Magnetic Flux Rope Generated From Electron-Scale Magnetopause Current Sheet: Magnetospheric Multiscale Observations. PMID 38440152	J Geophys Res Space Phys	2023	68	L1 68/100
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites. PMID 37847658	Bioinformatics	2023	67	L1 67/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data. PMID 37478378	Brief Bioinform	2023	60	L1 60/100
A workflow reproducibility scale for automatic validation of biological interpretation results. PMID 37150537	Gigascience	2022	100	L1 100/100
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing. PMID 37129547	Bioinformatics	2023	83	L1 83/100
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism. PMID 37013995	Nucleic Acids Res	2023	72	L1 72/100
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows. PMID 36810800	Gigascience	2022	50	L1 50/100
In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma. PMID 36650150	Nat Commun	2023	96	L1 96/100
A network-guided protocol to discover susceptibility genes in genome-wide association studies using stability selection. PMID 36609152	STAR Protoc	2023	92	L1 92/100
Comprehensive comparison of gene expression diversity among a variety of human stem cells. PMID 36458020	NAR Genom Bioinform	2022	71	L1 71/100
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y ⚑ PMID 36422864	Elife	2022	55	L1 55/100 ⚑
Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers. PMID 36373634	Nucleic Acids Res	2022	68	L1 68/100
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. PMID 36350658	Nucleic Acids Res	2023	84	L1 84/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms. PMID 36262335	F1000Res	2022	59	L1 59/100
The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network. PMID 36196618	Development	2022	82	L1 82/100
Lineage-specific, fast-evolving GATA-like gene regulates zygotic gene activation to promote endoderm specification and pattern formation in the Theridiidae spid PMID 36203191	BMC Biol	2022	65	L1 65/100
Transcription-coupled and epigenome-encoded mechanisms direct H3K4 methylation. PMID 35953471	Nat Commun	2022	83	83/100
JunB Is Critical for Survival of T Helper Cells. PMID 35837408	Front Immunol	2022	69	69/100
RNA modifications detection by comparative Nanopore direct RNA sequencing. PMID 34893601	Nat Commun	2021	50	L1 50/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases. ⚑ PMID 34601390	Comput Biol Med	2021	69	L1 69/100 ⚑
Genetically engineered stem cell-derived retinal grafts for improved retinal reconstruction after transplantation. PMID 34409267	iScience	2021	84	L1 84/100
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. PMID 34172000	BMC Genomics	2021	74	L1 74/100
TGF-β-dependent reprogramming of amino acid metabolism induces epithelial-mesenchymal transition in non-small cell lung cancers. PMID 34168290	Commun Biol	2021	85	L1 85/100
Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells. PMID 33253153	PLoS Comput Biol	2020	90	L1 90/100
Mitochondrial volume fraction and translation duration impact mitochondrial mRNA localization and protein synthesis. PMID 32762840	Elife	2020	81	L1 81/100
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. ⚑ PMID 32596448	Sci Adv	2020	57	L1 57/100 ⚑
All of gene expression (AOE): An integrated index for public gene expression databases. ⚑ PMID 31978081	PLoS One	2020	—	not yet assessed
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing. PMID 30744683	Genome Biol	2019	97	L1 97/100
DNA demethylation is associated with malignant progression of lower-grade gliomas. PMID 30760837	Sci Rep	2019	—	L1 No data access
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
DFAST and DAGA: web-based integrated genome annotation tools and resources. PMID 27867804	Biosci Microbiota Food Health	2016	89	L1 89/100
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria ⚑ PMID 26618080	PeerJ	2015	68	L1 68/100 ⚑