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45 matching publication(s)
Celline: a flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data.
PMID 41458999 · Front Bioinform · 2025
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64/100
eDNAmap: A Metabarcoding Web Tool for Comparing Marine Biodiversity, With Special Reference to Teleost Fish.
PMID 41189540 · Mol Ecol Resour · 2025
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59/100
H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D genome integrity.⚑
PMID 40764058 · Genome Res · 2025
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55/100
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Artificial Intelligence Approach in Machine Learning-Based Modeling and Networking of the Coronavirus Pathogenesis Pathway.
PMID 40699865 · Curr Issues Mol Biol · 2025
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No data access
Pleiotropic effects of MORC2 derive from its epigenetic signature
PMID 40302207 · · 2025
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No data access
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility.
PMID 40106407 · PLoS Genet · 2025
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95/100
IRSN-23 gene diagnosis enhances breast cancer subtype classification and predicts response to neoadjuvant chemotherapy: new validation analyses.
PMID 40128415 · Breast Cancer · 2025
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71/100
Direct observations of cross-scale wave-particle energy transfer in space plasmas.
PMID 39919183 · Sci Adv · 2025
94/100
Comprehensive data for studying serum exosome microRNA transcriptome in Parkinson's disease patients.
PMID 39406833 · Sci Data · 2024
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100/100
Advanced Methods for Analyzing in-Situ Observations of Magnetic Reconnection.
PMID 39234211 · Space Sci Rev · 2024
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No computation
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection.
PMID 39209804 · Nat Commun · 2024
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50/100
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images.
PMID 38539106 · BMC Bioinformatics · 2024
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77/100
Ion-Scale Magnetic Flux Rope Generated From Electron-Scale Magnetopause Current Sheet: Magnetospheric Multiscale Observations.
PMID 38440152 · J Geophys Res Space Phys · 2023
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68/100
Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites.
PMID 37847658 · Bioinformatics · 2023
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67/100
UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data.
PMID 37478378 · Brief Bioinform · 2023
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60/100
A workflow reproducibility scale for automatic validation of biological interpretation results.
PMID 37150537 · Gigascience · 2022
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100/100
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing.
PMID 37129547 · Bioinformatics · 2023
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83/100
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism.
PMID 37013995 · Nucleic Acids Res · 2023
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72/100
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.
PMID 36810800 · Gigascience · 2022
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50/100
In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma.
PMID 36650150 · Nat Commun · 2023
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96/100
A network-guided protocol to discover susceptibility genes in genome-wide association studies using stability selection.
PMID 36609152 · STAR Protoc · 2023
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92/100
Comprehensive comparison of gene expression diversity among a variety of human stem cells.
PMID 36458020 · NAR Genom Bioinform · 2022
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71/100
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y⚑
PMID 36422864 · Elife · 2022
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55/100
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Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers.
PMID 36373634 · Nucleic Acids Res · 2022
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68/100
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations.
PMID 36350658 · Nucleic Acids Res · 2023
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84/100
The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
PMID 36262335 · F1000Res · 2022
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59/100
The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network.
PMID 36196618 · Development · 2022
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82/100
Lineage-specific, fast-evolving GATA-like gene regulates zygotic gene activation to promote endoderm specification and pattern formation in the Theridiidae spid
PMID 36203191 · BMC Biol · 2022
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65/100
Transcription-coupled and epigenome-encoded mechanisms direct H3K4 methylation.
PMID 35953471 · Nat Commun · 2022
83/100
RNA modifications detection by comparative Nanopore direct RNA sequencing.
PMID 34893601 · Nat Commun · 2021
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50/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
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69/100
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Genetically engineered stem cell-derived retinal grafts for improved retinal reconstruction after transplantation.
PMID 34409267 · iScience · 2021
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84/100
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
PMID 34172000 · BMC Genomics · 2021
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74/100
TGF-β-dependent reprogramming of amino acid metabolism induces epithelial-mesenchymal transition in non-small cell lung cancers.
PMID 34168290 · Commun Biol · 2021
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85/100
Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells.
PMID 33253153 · PLoS Comput Biol · 2020
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90/100
Mitochondrial volume fraction and translation duration impact mitochondrial mRNA localization and protein synthesis.
PMID 32762840 · Elife · 2020
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81/100
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.⚑
PMID 32596448 · Sci Adv · 2020
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57/100
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All of gene expression (AOE): An integrated index for public gene expression databases.⚑
PMID 31978081 · PLoS One · 2020
not yet assessed
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing.
PMID 30744683 · Genome Biol · 2019
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97/100
DNA demethylation is associated with malignant progression of lower-grade gliomas.
PMID 30760837 · Sci Rep · 2019
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No data access
Firefly genomes illuminate parallel origins of bioluminescence in beetles.
PMID 30324905 · Elife · 2018
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93/100
DFAST and DAGA: web-based integrated genome annotation tools and resources.
PMID 27867804 · Biosci Microbiota Food Health · 2016
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89/100
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria⚑
PMID 26618080 · PeerJ · 2015
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68/100
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WDR11, a WD protein that interacts with transcription factor EMX1, is mutated in idiopathic hypogonadotropic hypogonadism and Kallmann syndrome.
PMID 20887964 · · 2010
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No computation