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21 matching publication(s)

Publication	Journal	Year	Score	Verdict
The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment. ⚑ PMID 25506420	F1000Res	2013	42	L1 42/100 ⚑
Bayesian prediction of microbial oxygen requirement. PMID 26913185	F1000Res	2013	76	L1 76/100
Vespucci: a system for building annotated databases of nascent transcripts. PMID 24304890	Nucleic Acids Res	2013	73	L1 73/100
Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms. PMID 24555103	F1000Res	2013	71	L1 71/100
Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity. PMID 23326238	PLoS Genet	2013	49	L1 49/100
Using random walks to identify cancer-associated modules in expression data. ⚑ PMID 24128261	BioData Min	2013	—	not yet assessed
Ordinal-level phylogenomics of the arthropod class Diplopoda (millipedes) based on an analysis of 221 nuclear protein-coding loci generated using next-generatio PMID 24236165	PLoS One	2013	82	L1 82/100
Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression. PMID 23951250	PLoS One	2013	67	L1 67/100
Compression of structured high-throughput sequencing data. ⚑ PMID 24260313	PLoS One	2013	43	L1 43/100 ⚑
A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly. PMID 23496952	BMC Genomics	2013	69	L1 69/100
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. PMID 24068976	PLoS Genet	2013	76	L1 76/100
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing. PMID 23979935	G3 (Bethesda)	2013	91	L1 91/100
A global change in RNA polymerase II pausing during the Drosophila midblastula transition. PMID 23951546	Elife	2013	71	L1 71/100
Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic. ⚑ PMID 23516341	PLoS Comput Biol	2013	44	L1 44/100 ⚑
An extensive evaluation of read trimming effects on Illumina NGS data analysis. PMID 24376861	PLoS One	2013	85	L1 85/100
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress. ⚑ PMID 24324815	PLoS One	2013	38	L1 38/100 ⚑
FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq. PMID 23768108	BMC Bioinformatics	2013	65	L1 65/100
Optimal scaling of digital transcriptomes. PMID 24223126	PLoS One	2013	67	L1 67/100
Digital sorting of complex tissues for cell type-specific gene expression profiles. PMID 23497278	BMC Bioinformatics	2013	85	L1 85/100
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA. PMID 24204593	PLoS One	2013	71	71/100
Functional analysis of a duplication (p.E63_D69dup) in the switch II region of HRAS: new aspects of the molecular pathogenesis underlying Costello syndrome. PMID 23335589	—	2013	—	L1 No computation