Darryl Shibata
Reproducibility track record
1
assessed papers
90/100
mean reproducibility
1
reproduced (C1–C2)
0
flagged
8
total citations
flag rate:
0%
(0/1)
The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.
Authorship role
first author: 0
last author: 0
Topics
Funders
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Frequent co-authors
Institutions
University of Southern California 1
Geography (author institutions)
US 1
Co-author network
Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.
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Assessed papers (1)
Complete publication record (356)
Request a reproduction →1 assessed by us (1 reproduced) · 355 not yet assessed — every PubMed paper on record, linked below.
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PHYFUM: Phylogenetic Reconstruction of Normal and Pre-malignant Tissue Evolution Using Fluctuating Methylation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 42146363not yet assessed
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Fluctuating DNA methylation sites encode colorectal tumour growth history ↗bioRxiv (Cold Spring Harbor Laboratory) · 2026 · PMID 42327280not yet assessed
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Conception-calibrated male pediatric tumor mitotic clocks ↗Communications Biology · 2026 · PMID 42265394not yet assessed
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Fluctuating DNA methylation tracks cancer evolution at clinical scale ↗Nature · 2025 · PMID 40931062not yet assessed
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Mapping the temporal landscape of breast cancer using epigenetic entropy ↗Communications Biology · 2025 · PMID 41102398not yet assessed
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Human brain ancestral barcodes ↗eLife · 2025not yet assessed
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Abstract 7482: Mapping the temporal landscape of breast cancer using epigenetic entropy ↗Cancer Research · 2025not yet assessed
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Spatially Discontinuous Mutation Topographies in Ductal Carcinoma In Situ Reveal Noncompetitive Growth Dynamics ↗Cancer Research · 2025 · PMID 41066536not yet assessed
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Abstract B034: PHYFUM: Reconstructing the evolutionary dynamics of human tissues using fluctuating methylation clocks ↗Cancer Research · 2025not yet assessed
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Aggressive Neuroblastomas Start Growing after Infancy ↗bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41889813not yet assessed
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Fluctuating DNA methylation tracks cancer evolution at clinical scale ↗Zurich Open Repository and Archive (University of Zurich) · 2025not yet assessed
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Testing Adaptive Therapy Protocols Using Gemcitabine and Capecitabine in a Preclinical Model of Endocrine-Resistant Breast Cancer ↗Cancers · 2024 · PMID 38254748not yet assessed
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Developmental hematopoietic stem cell variation explains clonal hematopoiesis later in lifeNature Communications · 2024 · PMID 39592593L1 90/100
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Developmental hematopoietic stem cell variation explains clonal hematopoiesis later in life ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 38496542not yet assessed
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Mapping the Temporal Landscape of Breast Cancer Using Epigenetic Entropy ↗Research Square · 2024 · PMID 39574883not yet assessed
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Abstract PR009: Tick tock trees: Reconstructing the evolutionary dynamics of human tissues using fluctuating methylation clocks ↗Cancer Research · 2024not yet assessed
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Abstract 4300: Large-scale, low-cost, and accurate measurement of cancer evolutionary dynamics from clinical patient samples ↗Cancer Research · 2024not yet assessed
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Human Brain Ancestral Barcodes ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 39071290not yet assessed
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Human brain ancestral barcodes ↗eLife · 2024 · PMID 40492407not yet assessed
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Human Brain Barcodes ↗eLife · 2024not yet assessed
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Mapping the Temporal Landscape of Breast Cancer Using Epigenetic Entropy ↗bioRxiv (Cold Spring Harbor Laboratory) · 2024not yet assessed
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Human Brain Ancestral Barcodes ↗eLife · 2024not yet assessed
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Testing Adaptive Therapy Protocols using Gemcitabine and Capecitabine on a Mouse Model of Endocrine-Resistant Breast Cancer ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37781632not yet assessed
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Growth Dynamics of Ductal Carcinoma in Situ Recapitulate Normal Breast Development ↗bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37873488not yet assessed
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Epigenetic Conservation Infers That Colorectal Cancer Progenitors Retain The Phenotypic Plasticity Of Normal Colon ↗Research Square · 2023not yet assessed
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O47 Spatially resolving the dynamics of immune escape in advanced colorectal cancer ↗Oral Presentations · 2023not yet assessed
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253e IMMUNE EDITING IN THE INVASIVE MARGIN AND NODE DEPOSITS OF COLORECTAL CANCER SELECTS FOR CELLULAR NEIGHBOURHOODS ENRICHED IN PDL1+ CANCER CELLS ↗Gastroenterology · 2023not yet assessed
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Phenotypic plasticity and genetic control in colorectal cancer evolution ↗Nature · 2022 · PMID 36289336not yet assessed
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The co-evolution of the genome and epigenome in colorectal cancer ↗Nature · 2022 · PMID 36289335not yet assessed
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Fluctuating methylation clocks for cell lineage tracing at high temporal resolution in human tissues ↗Nature Biotechnology · 2022 · PMID 34980912not yet assessed
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Lineage tracing in human tissues ↗The Journal of Pathology · 2022 · PMID 35415852not yet assessed
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Homeostasis limits keratinocyte evolution ↗Proceedings of the National Academy of Sciences · 2022 · PMID 35998218not yet assessed
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Gattaca: Base-Pair Resolution Mutation Tracking for Somatic Evolution Studies using Agent-based Models ↗Molecular Biology and Evolution · 2022 · PMID 35298641not yet assessed
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Abstract A019: Mutation agnostic diagnosis of clonal hematopoiesis of indeterminate potential (CHIP) using fluctuating methylation clocks ↗Cancer Research · 2022not yet assessed
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Abstract 634: Mutation agnostic diagnosis of clonal hematopoiesis of indeterminate potential using fluctuating methylation clocks ↗Cancer Research · 2022not yet assessed
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A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors ↗Bioinformatics · 2021 · PMID 34487148not yet assessed
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Functional human genes typically exhibit epigenetic conservation ↗PLoS ONE · 2021 · PMID 34520456not yet assessed
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Phenotypic plasticity and genetic control in colorectal cancer evolution ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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The co-evolution of the genome and epigenome in colorectal cancer ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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The co-evolution of the genome and epigenome in colorectal cancer ↗Research Square · 2021not yet assessed
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Assessment of the evolutionary consequence of putative driver mutations in colorectal cancer with spatial multiomic data ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Gattaca: Base pair resolution mutation tracking for somatic evolution studies using agent-based models ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Reconstruction of Contemporary Human Stem Cell Dynamics with Oscillatory Molecular Clocks ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Functional Human Genes Typically Exhibit Epigenetic Conservation ↗bioRxiv (Cold Spring Harbor Laboratory) · 2021not yet assessed
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Deep learned tissue “fingerprints” classify breast cancers by ER/PR/Her2 status from H&E images ↗Scientific Reports · 2020 · PMID 32350370not yet assessed
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Minimal barriers to invasion during human colorectal tumor growth ↗Nature Communications · 2020 · PMID 32152322not yet assessed
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Navigating the path to distant metastasis ↗Nature Genetics · 2020 · PMID 32632324not yet assessed
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Epigenetic Conservation Is a Beacon of Function: An Analysis Using Methcon5 Software for Studying Gene Methylation ↗JCO Clinical Cancer Informatics · 2020 · PMID 32078366not yet assessed
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Visualizing Human Colorectal Cancer Intratumor Heterogeneity with Phylogeography ↗iScience · 2020 · PMID 32623333not yet assessed
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Negative selection may cause grossly altered but broadly stable karyotypes in metastatic colorectal cancer ↗bioRxiv (Cold Spring Harbor Laboratory) · 2020not yet assessed
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Abstract 2683: Ductal carcinoma in situ is a multiclonal disease ↗Cancer Research · 2020not yet assessed
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Abstract PR02: Inferring the evolutionary dynamics of ductal carcinoma in situ through multi-regional sequencing and mathematical modeling ↗Cancer Research · 2020not yet assessed
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Tumorigenesis as the Paradigm of Quasi-neutral Molecular Evolution ↗Molecular Biology and Evolution · 2019 · PMID 30912799not yet assessed
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Mutational signatures in colon cancer ↗BMC Research Notes · 2019 · PMID 31796096not yet assessed
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HiLDA: a statistical approach to investigate differences in mutational signatures ↗PeerJ · 2019 · PMID 31523512not yet assessed
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Cancer cell evolution through the ages ↗Science · 2019 · PMID 31371596not yet assessed
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Minimal Barriers to Invasion During Human Colorectal Tumor Growth ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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Clonal Architecture of the Epidermis: Homeostasis Limits Keratinocyte Evolution ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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HiLDA: a statistical approach to investigate differences in mutational signatures ↗bioRxiv (Cold Spring Harbor Laboratory) · 2019not yet assessed
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Abstract 1648: Deep learning tissue "fingerprints" to identify patients and predict clinical subtypes of breast cancer from digital pathology images ↗Bioinformatics, Convergence Science, and Systems Biology · 2019not yet assessed
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Abstract 1648: Deep learning tissue "fingerprints" to identify patients and predict clinical subtypes of breast cancer from digital pathology images ↗Cancer Research · 2019not yet assessed
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Spatial mutation patterns as markers of early colorectal tumor cell mobility ↗Proceedings of the National Academy of Sciences · 2018 · PMID 29760052not yet assessed
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Epigenetic Heterogeneity in Human Colorectal Tumors Reveals Preferential Conservation And Evidence of Immune Surveillance ↗Scientific Reports · 2018 · PMID 30470817not yet assessed
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Evolutionary Stem Cell Poker and Cancer Risks: the Paradox of the Large and Small Intestines ↗Current Pathobiology Reports · 2018 · PMID 30713810not yet assessed
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Phylogenetic and phylodynamic analyses of hepatitis C virus subtype 1a in Okinawa, Japan ↗Journal of Viral Hepatitis · 2018 · PMID 29577516not yet assessed
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Somatic cell evolution: how to improve with age ↗The Journal of Pathology · 2018 · PMID 30246391not yet assessed
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Quasi-neutral molecular evolution — When positive and negative selection cancel out ↗bioRxiv (Cold Spring Harbor Laboratory) · 2018not yet assessed
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Classifying the evolutionary and ecological features of neoplasms ↗Nature reviews. Cancer · 2017 · PMID 28912577not yet assessed
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Between-region genetic divergence reflects the mode and tempo of tumor evolution ↗Nature Genetics · 2017 · PMID 28581503not yet assessed
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Early mutation bursts in colorectal tumors ↗PLoS ONE · 2017 · PMID 28257429not yet assessed
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Single cell lineage tracing reveals a role for TgfβR2 in intestinal stem cell dynamics and differentiation ↗Proceedings of the National Academy of Sciences · 2016 · PMID 27791005not yet assessed
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At least two well-spaced samples are needed to genotype a solid tumor ↗BMC Cancer · 2016 · PMID 27015839not yet assessed
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HistoMosaic Detecting KRAS G12V Mutation Across Colorectal Cancer Tissue Slices through in Situ PCR ↗Analytical Chemistry · 2016 · PMID 26820161not yet assessed
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Abstract 2382: Novel integration of genomic and morphological information reveals tumor tissue heterogeneity ↗Cancer Research · 2016not yet assessed
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MOESM3 of Derivation of induced pluripotent stem cells from orangutan skin fibroblasts ↗Figshare · 2016not yet assessed
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A Big Bang model of human colorectal tumor growth ↗Nature Genetics · 2015 · PMID 25665006not yet assessed
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Derivation of induced pluripotent stem cells from orangutan skin fibroblasts ↗BMC Research Notes · 2015 · PMID 26475477not yet assessed
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Many private mutations originate from the first few divisions of a human colorectal adenoma ↗The Journal of Pathology · 2015 · PMID 26119426not yet assessed
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Can oncology recapitulate paleontology? Lessons from species extinctions ↗Nature Reviews Clinical Oncology · 2015 · PMID 25687908not yet assessed
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Induced pluripotent stem cell models of Zellweger spectrum disorder show impaired peroxisome assembly and cell type-specific lipid abnormalities ↗Stem Cell Research & Therapy · 2015 · PMID 26319495not yet assessed
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Abstract B2-23: A Big Bang model of human colorectal tumor growth ↗Cancer Research · 2015not yet assessed
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MOESM2 of Derivation of induced pluripotent stem cells from orangutan skin fibroblasts ↗Figshare · 2015not yet assessed
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MOESM2 of Derivation of induced pluripotent stem cells from orangutan skin fibroblasts ↗Figshare · 2015not yet assessed
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Ancestral inference in tumors: How much can we know? ↗Journal of Theoretical Biology · 2014 · PMID 24907673not yet assessed
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Deep Sequencing Reveals Lack of a Clonal Relationship Between a Metachronous Classical Hodgkin and Diffuse Large B-Cell Lymphoma ↗Clinical Lymphoma Myeloma & Leukemia · 2014 · PMID 24548610not yet assessed
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Diffuse Large B-cell Lymphoma of Germinal Center and Nongerminal Center Phenotypes Presenting Concurrently at the Same Anatomic Site ↗Applied immunohistochemistry & molecular morphology · 2014 · PMID 25153495not yet assessed
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Direct Measurements of Human Colon Crypt Stem Cell Niche Genetic Fidelity: The Role of Chance in Non-Darwinian Mutation Selection ↗Frontiers in Oncology · 2013 · PMID 24133655not yet assessed
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Occult progression byApc-deficient intestinal crypts as a target for chemoprevention ↗Carcinogenesis · 2013 · PMID 23996931not yet assessed
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Abstract A14: Transforming growth factor beta signaling regulates the fate of intestinal stem cells ↗Cancer Research · 2013not yet assessed
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Abstract B13: Occult progression by Apc-deficient intestinal crypts as a target for chemoprevention ↗Cancer Research · 2013not yet assessed
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Deuterium Fractionation just after the Star Formation2013not yet assessed
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Variable Clonal Repopulation Dynamics Influence Chemotherapy Response in Colorectal Cancer ↗Science · 2012 · PMID 23239622not yet assessed
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Heterogeneity and Tumor History ↗Science · 2012 · PMID 22517848not yet assessed
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Single-Molecule Genomic Data Delineate Patient-Specific Tumor Profiles and Cancer Stem Cell Organization ↗Cancer Research · 2012 · PMID 23090114not yet assessed
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The gene expression profiles of induced pluripotent stem cells from individuals with childhood cerebral adrenoleukodystrophy are consistent with proposed mechanisms of pathogenesis ↗Stem Cell Research & Therapy · 2012 · PMID 23036268not yet assessed
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Heterogeneity and Randomness of DNA Methylation Patterns in Human Embryonic Stem Cells ↗DNA and Cell Biology · 2012 · PMID 22277069not yet assessed
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High DNA Methylation Pattern Intratumoral Diversity Implies Weak Selection in Many Human Colorectal Cancers ↗PLoS ONE · 2011 · PMID 21738754not yet assessed
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The role of theorem proving in systems biology ↗Journal of Theoretical Biology · 2011 · PMID 22244914not yet assessed
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Different phenotypic consequences of simultaneous versus stepwise Apc loss ↗Oncogene · 2011 · PMID 21892206not yet assessed
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Reduction of pancreatic acinar cell tumor multiplicity in Dnmt1 hypomorphic mice ↗Carcinogenesis · 2011 · PMID 21362628not yet assessed
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A stem cell niche dominance theorem ↗BMC Systems Biology · 2011 · PMID 21214945not yet assessed
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Epigenetic Subgroups of Esophageal and Gastric Adenocarcinoma with Differential GATA5 DNA Methylation Associated with Clinical and Lifestyle Factors ↗PLoS ONE · 2011 · PMID 22028801not yet assessed
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Cytomegalovirus-associated gastric ulcers in a patient with dermatomyositis treated with steroid and cyclophosphamide pulse therapy ↗Endoscopy · 2011 · PMID 21915824not yet assessed
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Molecular Tumor Clocks To Study the Evolution of Drug Resistance ↗Molecular Pharmaceutics · 2011 · PMID 21732670not yet assessed
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Principles, Techniques, and Applications of Tissue MicrofluidicsNASA Technical Reports Server (NASA) · 2011not yet assessed
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A simple algebraic cancer equation: calculating how cancers may arise with normal mutation rates ↗BMC Cancer · 2010 · PMID 20051132not yet assessed
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Hormone therapy, DNA methylation and colon cancer ↗Carcinogenesis · 2010 · PMID 20064828not yet assessed
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Mutation and epigenetic molecular clocks in cancer ↗Carcinogenesis · 2010 · PMID 21076057not yet assessed
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Is there any genetic instability in human cancer? ↗DNA repair · 2010 · PMID 20605538not yet assessed
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Identification and functional relevance of de novo DNA methylation in cancerous B‐cell populations ↗Journal of Cellular Biochemistry · 2010 · PMID 20069569not yet assessed
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Using DNA Methylation Patterns to Infer Tumor Ancestry ↗PLoS ONE · 2010 · PMID 20711251not yet assessed
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Systems biologists hope for a full integration of their field into cancer research.Research Explorer (The University of Manchester) · 2010not yet assessed
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A stem cell niche dominance theorem. ↗PubMed · 2010 · PMID 24693115not yet assessed
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Examination of allergen specific IgE antibodies by CAP-RAST in patients with allergic rhinitis between 2004 and 2008.Kawasaki medical journal · 2010not yet assessed
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Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers ↗Proceedings of the National Academy of Sciences · 2009 · PMID 19261858not yet assessed
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Urinary tract infections and reduced risk of bladder cancer in Los Angeles ↗British Journal of Cancer · 2009 · PMID 19174821not yet assessed
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Systems Biologists Seek Fuller Integration of Systems Biology Approaches in New Cancer Research Programs ↗Cancer Research · 2009 · PMID 20028868not yet assessed
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Many colorectal cancers are “flat” clonal expansions ↗Cell Cycle · 2009 · PMID 19556889not yet assessed
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Unregulated smooth-muscle myosin in human intestinal neoplasia ↗Proceedings of the National Academy of Sciences · 2008 · PMID 18391202not yet assessed
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Inferring human stem cell behaviour from epigenetic drift ↗The Journal of Pathology · 2008 · PMID 19031430not yet assessed
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Water intake and bladder cancer risk in Los Angeles County ↗International Journal of Cancer · 2008 · PMID 18623082not yet assessed
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Modeling DNA Methylation in a Population of Cancer Cells ↗Statistical Applications in Genetics and Molecular Biology · 2008 · PMID 18597664not yet assessed
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Tractable Cre-lox system for stochastic alteration of genes in mice ↗Nature Methods · 2008 · PMID 18264106not yet assessed
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Multilineage hematopoietic recovery with concomitant antitumor effects using low dose Interleukin-12 in myelosuppressed tumor-bearing mice ↗Journal of Translational Medicine · 2008 · PMID 18489769not yet assessed
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Inferring relative numbers of human leucocyte genome replications ↗British Journal of Haematology · 2008 · PMID 18410448not yet assessed
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Older individuals appear to acquire mitotically older colorectal cancers ↗The Journal of Pathology · 2008 · PMID 19165870not yet assessed
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Stem cells as common ancestors in a colorectal cancer ancestral tree ↗Current Opinion in Gastroenterology · 2008 · PMID 18043234not yet assessed
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Ancestral Trees for Modeling Stem Cell Lineages Genetically Rather Than Functionally: Understanding Mutation Accumulation and Distinguishing the Restrictive Cancer Stem Cell Propagation Theory and the Unrestricted Cell Propagation Theory of Human Tumorigenesis ↗Breast Disease · 2008 · PMID 19029621not yet assessed
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High-throughput analysis of methylation patterns to track cell divisions ↗GBM Annual Spring meeting Mosbach 2008 · 2008not yet assessed
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Mistakes Make History: Visualizing Intestinal Tectonics ↗Gastroenterology · 2008 · PMID 18242228not yet assessed
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Abstract CN12-02: Evolution in carcinogenesis ↗Cancer Prevention Research · 2008not yet assessed
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The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns ↗PLoS Computational Biology · 2007 · PMID 17335343not yet assessed
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The Fuzzy Math of Solid Tumor Stem Cells: A Perspective ↗Cancer Research · 2007 · PMID 17908998not yet assessed
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IL-12 Facilitates Both the Recovery of Endogenous Hematopoiesis and the Engraftment of Stem Cells after Ionizing Radiation ↗Experimental Hematology · 2007 · PMID 17258069not yet assessed
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Lack of increases in methylation at three CpG-rich genomic loci in non-mitotic adult tissues during aging ↗BMC Medical Genetics · 2007 · PMID 17672908not yet assessed
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Stem Cell Chronicles: Autobiographies Within Genomes ↗Stem Cell Reviews and Reports · 2007 · PMID 17873386not yet assessed
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Smad3 Deficiency Promotes Tumorigenesis in the Distal Colon of ApcMin/+ Mice ↗Cancer Research · 2006 · PMID 16951153not yet assessed
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Counting Divisions in a Human Somatic Cell Tree: How, What and Why ↗Cell Cycle · 2006 · PMID 16582617not yet assessed
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Clonal diversity in tumor progression ↗Nature Genetics · 2006 · PMID 16570060not yet assessed
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Human hair genealogies and stem cell latency ↗BMC Biology · 2006 · PMID 16457718not yet assessed
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When does MMR loss occur during HNPCC progression? ↗Cancer Biomarkers · 2006 · PMID 17192057not yet assessed
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Age-related human small intestine methylation: evidence for stem cell niches ↗BMC Medicine · 2005 · PMID 15975143not yet assessed
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Counting human somatic cell replications: Methylation mirrors endometrial stem cell divisions ↗Proceedings of the National Academy of Sciences · 2005 · PMID 16314580not yet assessed
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Diethylstilbestrol effects and lymphomagenesis in Mlh1‐deficient mice ↗International Journal of Cancer · 2005 · PMID 15700306not yet assessed
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The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns ↗PLoS Computational Biology · 2005not yet assessed
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Numbers of mutations to different types of colorectal cancer ↗BMC Cancer · 2005 · PMID 16202134not yet assessed
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Stability of colon stem cell methylation after neo-adjuvant therapy in a patient with attenuated familial adenomatous polyposis ↗BMC Gastroenterology · 2005 · PMID 15941485not yet assessed
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ミニトマト(Micro-Tom)において突然変異体の大規模なスクリーニングに向けたEMS処理による突然変異の誘発Plant and Cell Physiology · 2005not yet assessed
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Deficiencies in Mouse Myh and Ogg1 Result in Tumor Predisposition and G to T Mutations in Codon 12 of the K-Ras Oncogene in Lung Tumors ↗Cancer Research · 2004 · PMID 15126346not yet assessed
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In vitro mutation artifacts after formalin fixation and error prone translesion synthesis during PCR ↗BMC Clinical Pathology · 2004 · PMID 15028125not yet assessed
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Pretumor Progression ↗American Journal Of Pathology · 2004 · PMID 15039221not yet assessed
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Generation and Characterization of Endonuclease G Null Mice ↗Molecular and Cellular Biology · 2004 · PMID 15601850not yet assessed
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Enhanced Stem Cell Survival in Familial Adenomatous Polyposis ↗American Journal Of Pathology · 2004 · PMID 15039224not yet assessed
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Tracing ancestry with methylation patterns: most crypts appear distantly related in normal adult human colon ↗BMC Gastroenterology · 2004 · PMID 15059289not yet assessed
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Colorectal Pretumor Progression Before and After Loss of DNA Mismatch Repair ↗American Journal Of Pathology · 2004 · PMID 15039232not yet assessed
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Stem Cells As Common Ancestors ↗Humana Press eBooks · 2004not yet assessed
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The SURF Technique: Selective Genetic Analysis of Microscopic Tissue Heterogeneity ↗Humana Press eBooks · 2003 · PMID 9664501not yet assessed
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The SURF Technique: Selective Genetic Analysis of Microscopic Tissue Heterogeneity ↗Colorectal Cancer · 2003 · PMID 21318816not yet assessed
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Low-level microsatellite instability in most colorectal carcinomas. ↗PubMed · 2002 · PMID 11861399not yet assessed
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Methylation reveals a niche: stem cell succession in human colon crypts ↗Oncogene · 2002 · PMID 12154406not yet assessed
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DNA Methyltransferase Deficiency Modifies Cancer Susceptibility in Mice Lacking DNA Mismatch Repair ↗Molecular and Cellular Biology · 2002 · PMID 11940649not yet assessed
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The embryonic lethality in DNA ligase IV-deficient mice is rescued by deletion of Ku: implications for unifying the heterogeneous phenotypes of NHEJ mutants ↗DNA repair · 2002 · PMID 12531011not yet assessed
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PolyA Deletions in Hereditary Nonpolyposis Colorectal Cancer ↗American Journal Of Pathology · 2002 · PMID 11943734not yet assessed
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Molecular tumour clocks and colorectal cancer: seeing the unseen. ↗PubMed · 2002 · PMID 12555991not yet assessed
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Investigating stem cells in human colon by using methylation patterns ↗Proceedings of the National Academy of Sciences · 2001 · PMID 11517339not yet assessed
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Extensive somatic microsatellite mutations in normal human tissue. ↗PubMed · 2001 · PMID 11389087not yet assessed
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Genetic predisposition and somatic diversification in tumor development and progression ↗Advances in cancer research · 2001 · PMID 11034541not yet assessed
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Global and gene-specific epigenetic patterns in human bladder cancer genomes are relatively stable in vivo and in vitro over time. ↗PubMed · 2001 · PMID 11479229not yet assessed
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Mismatch repair deficiency and CpG island hypermethylation in sporadic colon adenocarcinomas. ↗PubMed · 2001 · PMID 11440966not yet assessed
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Talking tumours: histories from sequences ↗Annals of Medicine · 2001 · PMID 11327118not yet assessed
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Genetic reconstruction of individual colorectal tumor histories ↗Proceedings of the National Academy of Sciences · 2000 · PMID 10655514not yet assessed
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Clinical Significance of p53 Mutations in Adenocarcinoma of the Esophagus and Cardia ↗Annals of Surgery · 2000 · PMID 10674608not yet assessed
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Bladder cancer genotype stability during clinical progression ↗Genes Chromosomes and Cancer · 2000 · PMID 10918390not yet assessed
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Heterozygous DNA mismatch repair gene PMS2-knockout mice are susceptible to intestinal tumor induction with N-methyl-N-nitrosourea ↗Carcinogenesis · 2000 · PMID 10753224not yet assessed
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Book Review Cancer: The evolutionary legacy By Mel Greaves. 276 pp. New York, Oxford University Press, 2000. $27.50 0-19-262835-6 ↗New England Journal of Medicine · 2000not yet assessed
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Colorectal Adenoma and Cancer Divergence ↗American Journal Of Pathology · 1999 · PMID 10362806not yet assessed
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Loss of Function ofTrp53,but NotApc,Leads to the Development of Esophageal Adenocarcinoma in Mice with Jejunoesophageal Reflux ↗Journal of Surgical Research · 1999 · PMID 10210642not yet assessed
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Epstein-Barr Virus (EBV) Nuclear Antigen (EBNA)-4 Mutation in EBV-Associated Malignancies in Three Different Populations ↗American Journal Of Pathology · 1999 · PMID 10487851not yet assessed
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Pattern Recognition and Arrays ↗American Journal Of Pathology · 1999 · PMID 10233834not yet assessed
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Reflux von Duodenalsaft erzeugt Ösophaguskarzinome in Trp53-knockout Mäusen ↗Langenbecks Archiv für Chirurgie. Supplement · 1999not yet assessed
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Tumour susceptibility and spontaneous mutation in mice deficient in Mlh1, Pms1 and Pms2 DMA mismatch repair ↗Nature Genetics · 1998 · PMID 9500552not yet assessed
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Tracing Cell Fates in Human Colorectal Tumors from Somatic Microsatellite Mutations ↗American Journal Of Pathology · 1998 · PMID 9777950not yet assessed
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Epstein-Barr virus-associated nuclear antigen-1 carboxy-terminal gene sequences in Japanese and American patients with gastric carcinoma. ↗PubMed · 1998 · PMID 9690565not yet assessed
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Enhanced intestinal adenomatous polyp formation in Pms2-/-;Min mice. ↗PubMed · 1998 · PMID 9515784not yet assessed
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The dynamics of early intestinal tumour proliferation: to be or not to be. ↗PubMed · 1998 · PMID 10489628not yet assessed
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EPSTEIN-BARR VIRUS-ASSOCIATED GASTRIC CANCER IN THE UNITED STATESGann monograph on cancer research · 1998not yet assessed
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Localization of a susceptibility locus for Peutz-Jeghers syndrome to 19p using comparative genomic hybridization and targeted linkage analysis ↗Nature Genetics · 1997 · PMID 8988175not yet assessed
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Telomerase activity in normal and neoplastic breast. ↗PubMed · 1997 · PMID 9815730not yet assessed
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Microsatellite instability is rare in B-cell non-Hodgkin's lymphomas. ↗PubMed · 1997 · PMID 9028329not yet assessed
-
DNA mismatch repair in mammals: role in disease and meiosis ↗Current Opinion in Genetics & Development · 1997 · PMID 9229112not yet assessed
-
Intestinal stem cell division and genetic diversity. A computer and experimental analysis. ↗PubMed · 1997 · PMID 9250170not yet assessed
-
Molecular tumor clocks and dynamic phenotype. ↗PubMed · 1997 · PMID 9284810not yet assessed
-
Molecular Tumour Clocks ↗Annals of Medicine · 1997 · PMID 9073319not yet assessed
-
not yet assessed
-
Somatic microsatellite mutations as molecular tumor clocks ↗Nature Medicine · 1996 · PMID 8640559not yet assessed
-
Telomerase activity is commonly detected in hereditary nonpolyposis colorectal cancers. ↗PubMed · 1996 · PMID 8644849not yet assessed
-
Human Papillomavirus Investigation of Patients with Cervical Intraepithelial Neoplasia 3, Some of Whom Progressed to Invasive Cancer ↗International Journal of Gynecological Pathology · 1996 · PMID 8786201not yet assessed
-
Effects of mutation and growth rates on patterns of microsatellite instability. ↗PubMed · 1996 · PMID 8669462not yet assessed
-
Loss of DNA mismatch repair: Life in the fast lane? ↗Gastroenterology · 1996 · PMID 8690218not yet assessed
-
Pharmacology of the Gastric Mucosa: A Rational Approach to Helicobacter Polytherapy1996not yet assessed
-
Concordance for Hodgkin's Disease in Identical Twins Suggesting Genetic Susceptibility to the Young-Adult Form of the Disease ↗New England Journal of Medicine · 1995 · PMID 7824015not yet assessed
-
Elevated antibody titers to Epstein‐Barr virus prior to the diagnosis of Epstein‐Barr‐virus‐associated gastric adenocarcinoma ↗International Journal of Cancer · 1995 · PMID 7860138not yet assessed
-
Somatic mitochondrial mutation in gastric cancer. ↗PubMed · 1995 · PMID 7573355not yet assessed
-
Heterogeneity in intratumor distribution of p53 mutations in human prostate cancer. ↗PubMed · 1995 · PMID 7604888not yet assessed
-
Nodal benign and malignant monocytoid B cells with and without follicular lymphomas: A comparative study of follicular colonization, light chain restriction, bcl-2, and t(14; 18) in 39 cases ↗Human Pathology · 1995 · PMID 7774892not yet assessed
-
Role of zidovudine antiretroviral therapy in the pathogenesis of acquired immunodeficiency syndrome-related lymphoma ↗Blood · 1995 · PMID 8541552not yet assessed
-
Patterns of p53 mutations in squamous cell carcinoma of the lung: Acquisition at a relatively early age ↗Lung Cancer · 1995 · PMID 7992847not yet assessed
-
Genomic instability in repeated sequences is an early somatic event in colorectal tumorigenesis that persists after transformation ↗Nature Genetics · 1994 · PMID 8012390not yet assessed
-
BCL2 translocation frequency rises with age in humans. ↗Proceedings of the National Academy of Sciences · 1994 · PMID 8090743not yet assessed
-
Microsatellite Instability in Sporadic Endometrial Carcinoma ↗JNCI Journal of the National Cancer Institute · 1994 · PMID 8040889not yet assessed
-
p53 mutations and microsatellite instability in sporadic gastric cancer: when guardians fail. ↗PubMed · 1994 · PMID 8062274not yet assessed
-
Rearrangements of the BCL-6 gene in acquired immunodeficiency syndrome- associated non-Hodgkin's lymphoma: association with diffuse large-cell subtype ↗Blood · 1994 · PMID 8025268not yet assessed
-
Early mutational activation of the c-Ki-ras oncogene in endometrial carcinoma. ↗PubMed · 1994 · PMID 8137266not yet assessed
-
Anatomical distribution of HTLV‐I proviral sequence in an autopsy case of HTLV‐I associated myelopathy: A polymerase chain reaction study ↗Pathology International · 1994 · PMID 8025646not yet assessed
-
Further evidence that one of the earliest alterations in colorectal carcinogenesis involves APC. ↗PubMed · 1994 · PMID 8080037not yet assessed
-
Preparation of Nucleic Acids for Archival Material ↗Birkhäuser Boston eBooks · 1994not yet assessed
-
Incidence of Epstein-Barr virus bcl-2 expression and chromosomal translocation t(14;18) in large cell lymphoma associated with paragranuloma (lymphocyte-predominant Hodgkin's disease) ↗Human Pathology · 1994 · PMID 8150454not yet assessed
-
Follicular Small Lymphocytic Lymphoma ↗The American Journal of Surgical Pathology · 1994 · PMID 8092400not yet assessed
-
not yet assessed
-
Biologic aspects of AIDS-related lymphoma ↗Current Opinion in Oncology · 1994 · PMID 7827154not yet assessed
-
Somatic genomic instability at microsatellites: A persistent and early event in cancer of the recessive mutator phenotype ↗Pathophysiology · 1994not yet assessed
-
Arbitrarily Primed PCR for the Assessment of Clonality ↗Diagnostic Molecular Pathology · 1994not yet assessed
-
Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis ↗Nature · 1993 · PMID 8505985not yet assessed
-
Epstein-Barr virus-associated gastric adenocarcinoma among Japanese Americans in Hawaii. ↗PubMed · 1993 · PMID 8391356not yet assessed
-
Genetic Heterogeneity of the c-K-ras Locus in Colorectal Adenomas but not in Adenocarcinomas ↗JNCI Journal of the National Cancer Institute · 1993 · PMID 8515492not yet assessed
-
Identification of Mismatched Fixed Specimens With a Commercially Available Kit Based on the Polymerase Chain Reaction ↗American Journal of Clinical Pathology · 1993 · PMID 8249915not yet assessed
-
Selective ultraviolet radiation fractionation and polymerase chain reaction analysis of genetic alterations. ↗PubMed · 1993 · PMID 8256844not yet assessed
-
A pattern of accumulation of a somatic deletion of mitochondrial DNA in aging human tissues. ↗Proceedings of the National Academy of Sciences · 1992 · PMID 1502147not yet assessed
-
Epstein-Barr virus-associated gastric adenocarcinoma. ↗PubMed · 1992 · PMID 1314023not yet assessed
-
Description of an In Situ Hybridization Methodology for Detection of Epstein-Barr Virus RNA in Paraffin-Embedded Tissues, with a Survey of Normal and Neoplastic Tissues ↗Diagnostic Molecular Pathology · 1992 · PMID 1342973not yet assessed
-
Detection and localization of Epstein-Barr viral genomes in angioimmunoblastic lymphadenopathy and angioimmunoblastic lymphadenopathy-like lymphoma ↗Blood · 1992 · PMID 1373088not yet assessed
-
not yet assessed
-
Specific genetic analysis of microscopic tissue after selective ultraviolet radiation fractionation and the polymerase chain reaction. ↗PubMed · 1992 · PMID 1325739not yet assessed
-
Epstein-Barr virus genotypes in AIDS-associated lymphomas are similar to those in endemic Burkitt's lymphomas. ↗PubMed · 1992 · PMID 1325581not yet assessed
-
Epidemiological and biological study of acquired immunodeficiency syndrome-related lymphoma in the County of Los Angeles: preliminary results. ↗PubMed · 1992 · PMID 1327509not yet assessed
-
Description of an In Situ Hybridization Methodology for Detection of Epstein-Barr Virus RNA in Paraffin-Embedded Tissues, with a Survey of Normal and Neoplastic Tissues ↗Diagnostic Molecular Pathology · 1992not yet assessed
-
Characterization of the topography of Epstein-Barr virus infection in human immunodeficiency virus-associated lymphoid tissues. ↗PubMed · 1992 · PMID 1344820not yet assessed
-
[Bcl-2 in potentials precursors of nodular paragranuloma and its dedifferentiated variant (large cell B-lymphoma)]. ↗PubMed · 1992 · PMID 1283252not yet assessed
-
Recombination between feline leukemia virus subgroup B or C and endogenous env elements alters the in vitro biological activities of the viruses ↗Journal of Virology · 1992 · PMID 1316496not yet assessed
-
Association of Epstein-Barr virus with undifferentiated gastric carcinomas with intense lymphoid infiltration. Lymphoepithelioma-like carcinoma. ↗PubMed · 1991 · PMID 1653517not yet assessed
-
Epstein-Barr virus and Hodgkin's disease. A correlative in situ hybridization and polymerase chain reaction study. ↗PubMed · 1991 · PMID 1661073not yet assessed
-
Lymphoepithelioma-like Carcinoma and Its Relationship to Epstein–Barr Virus ↗American Journal of Clinical Pathology · 1991 · PMID 1650531not yet assessed
-
Recombination between feline leukemia virus subgroup B or C and endogenous env elements alters the in vitro biological activities of the viruses ↗Journal of Virology · 1991 · PMID 1658356not yet assessed
-
Epstein-Barr virus infections and Hodgkin's disease: A study of fixed tissues using the polymerase chain reaction ↗Human Pathology · 1991 · PMID 1660852not yet assessed
-
Fixed Human Tissues: A Resource for the Identification of Individuals ↗Journal of Forensic Sciences · 1991not yet assessed
-
Fixed human tissues: a resource for the identification of individuals. ↗PubMed · 1991 · PMID 1919478not yet assessed
-
not yet assessed
-
Detection of Human T-Cell Leukemia Virus Type I Proviral Sequences from Fixed Tissues of Seropositive Patients ↗American Journal of Clinical Pathology · 1991 · PMID 2014780not yet assessed
-
Letter to the editor: Epstein‐barr virus and T‐cell lymphoma ↗American Journal of Hematology · 1991 · PMID 1849349not yet assessed
-
not yet assessed
-
not yet assessed
-
Mutational activation of the c-K-ras gene in human pancreatic carcinoma ↗Baillière s Clinical Gastroenterology · 1990 · PMID 1976394not yet assessed
-
Identification of a Mislabeled Fixed Specimen by DNA Analysis ↗The American Journal of Surgical Pathology · 1990 · PMID 2240357not yet assessed
-
DETECTION OF HUMAN CYTOMEGALOVIRUS ↗Elsevier eBooks · 1990not yet assessed
-
Detection of occult CNS involvement of follicular small cleaved lymphoma by the polymerase chain reaction. ↗PubMed · 1990 · PMID 2308923not yet assessed
-
Detection of specific t(14;18) chromosomal translocations in fixed tissues ↗Human Pathology · 1990 · PMID 2307446not yet assessed
-
Detection of Human Papillomavirus in Formalin-Fixed, Invasive Squamous Carcinomas Using the Polymerase Chain Reaction ↗The American Journal of Surgical Pathology · 1989 · PMID 2537583not yet assessed
-
Postmortem enzyme immunoassay for human immunodeficiency virus. ↗PubMed · 1989 · PMID 2653271not yet assessed
-
Human immunodeficiency viral DNA is readily found in lymph node biopsies from seropositive individuals. Analysis of fixed tissue using the polymerase chain reaction. ↗PubMed · 1989 · PMID 2679114not yet assessed
-
Analysis of human immunodeficiency virus and cytomegalovirus infection by polymerase chain reaction in the acquired immunodeficiency syndrome. An autopsy study. ↗PubMed · 1989 · PMID 2554843not yet assessed
-
Detection of human papillomavirus DNA in fine‐needle aspirations of metastatic squamous‐cell carcinoma of the uterine cervix using the polymerase chain reaction ↗Diagnostic Cytopathology · 1989 · PMID 2541988not yet assessed
-
Most human carcinomas of the exocrine pancreas contain mutant c-K-ras genes ↗Cell · 1988 · PMID 2453289not yet assessed
-
Detection of human papilloma virus in paraffin-embedded tissue using the polymerase chain reaction. ↗The Journal of Experimental Medicine · 1988 · PMID 2826637not yet assessed
-
Detection of Cytomegalovirus DNA in Peripheral Blood of Patients Infected with Human Immunodeficiency Virus ↗The Journal of Infectious Diseases · 1988 · PMID 2848898not yet assessed
-
Analysis of DNA sequences in forty-year-old paraffin-embedded thin-tissue sections: a bridge between molecular biology and classical histology. ↗PubMed · 1988 · PMID 2840197not yet assessed
-
Cytomegalovirus infection in the acquired immunodeficiency syndrome. Clinical and autopsy findings. ↗PubMed · 1988 · PMID 2833874not yet assessed
-
Detection of human papillomavirus in normal and dysplastic tissue by the polymerase chain reaction. ↗PubMed · 1988 · PMID 2845193not yet assessed
-
Malignant peripheral nerve sheath tumor arising in an adrenal ganglioneuroma in an adult male homosexual ↗Cancer · 1986 · PMID 3955508not yet assessed
-
Genetic Complementation byCloned Bacteriophage T4Late Genes1981not yet assessed
-
[A case of Turner's syndrome with positive Australia antigen]. ↗PubMed · 1972 · PMID 5066362not yet assessed
Full bibliography from OpenAlex; reproducibility verdicts matched by PMID.
Author attribution follows OpenAlex disambiguation, which is imperfect — a researcher's papers can be split across profiles or mixed with a namesake.
Merged across profiles sharing this ORCID where present. See every “Shibata D” paper on PubMed ↗