Saptarshi Sinha

The share of this author’s assessed papers carrying a ⚑ flag. A concentration is a prompt for expert review — never, on its own, a determination about the person.

Collaborators, sized by shared output and coloured by their own reproducibility (green = high, red = low). Click a node to open their card. A pattern is a prompt for review, never a determination.

How this author’s assessed papers reproduced — the outcome of reproduction attempts, not a judgement of the person. Coverage is partial and grows over time.

Assessed papers (1)

• COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
  2022 L1 85/100

1 assessed by us (1 reproduced) · 62 not yet assessed — every PubMed paper on record, linked below.

• COMPASS: A Web-Based COMPosite Activity Scoring System to Navigate Health and Disease Through Deterministic Digital Biomarkers ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2026
  not yet assessed
• HD-EPIC: A Highly-Detailed Egocentric Video Dataset ↗

  2025
  not yet assessed
• Distinct colitis-associated macrophages drive NOD2-dependent bacterial sensing and gut homeostasis ↗

  Journal of Clinical Investigation · 2025 · PMID 41321314
  not yet assessed
• CANDiT: A machine learning framework for differentiation therapy in colorectal cancer ↗

  Cell Reports Medicine · 2025 · PMID 41118768
  not yet assessed
• Nootropic benzothiazoles promote dendritic spine formation by targeting fascin-1 ↗

  Journal of Biological Chemistry · 2025 · PMID 40784448
  not yet assessed
• Distinct Colitis-Associated Macrophages Drive NOD2-Dependent Bacterial Sensing and Gut Homeostasis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 40766554
  not yet assessed
• New Approach Methodologies in Crohn’s Disease Link Molecular Disease Subtypes to Clinical Outcomes ↗

  medRxiv · 2025 · PMID 40236416
  not yet assessed
• COMPASS enables cohort-independent digital biomarker discovery and pathway quantification ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2025 · PMID 41573865
  not yet assessed
• HD-EPIC: A Highly-Detailed Egocentric Video Dataset ↗

  arXiv (Cornell University) · 2025
  not yet assessed
• 1216: A LIVING ORGANOID BIOBANK OF CROHN’S DISEASE PATIENTS REVEALS DISTINCT CLINICAL CORRELATES OF MOLECULAR SUBYTPES OF DISEASE ↗

  Gastroenterology · 2025
  not yet assessed
• 1035: MOLECULAR SUBTYPING OF A PROSPECTIVE CROHN’S DISEASE COHORT IDENTIFIES DISTINCT MYOFIBROBLAST POPULATIONS DRIVING DISEASE PROGRESSION ↗

  Gastroenterology · 2025
  not yet assessed
• Abstract 4363113: A Systems Biology–Driven Strategy to ‘Defat’ Lipid-Associated Macrophages and Reverse Atherosclerosis ↗

  Circulation · 2025
  not yet assessed
• COMPASS: A Web-Based COMPosite Activity Scoring System to Navigate Health and Disease Through Deterministic Digital Biomarkers ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• AXIOM-Bio: A Foundational Model for Biological Logic and Disease ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• PICASSO™: A Human-First Framework for Federally Mandated New Approach Methodologies ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• PICASSO™: A Human-First Framework for Federally Mandated New Approach Methodologies ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2025
  not yet assessed
• MDA5-autoimmunity and interstitial pneumonitis contemporaneous with the COVID-19 pandemic (MIP-C) ↗

  EBioMedicine · 2024 · PMID 38723554
  not yet assessed
• Breast cancers that disseminate to bone marrow acquire aggressive phenotypes through CX43-related tumor-stroma tunnels ↗

  Journal of Clinical Investigation · 2024 · PMID 39480488
  not yet assessed
• Growth factor–dependent phosphorylation of Gα _i shapes canonical signaling by G protein–coupled receptors ↗

  Science Signaling · 2024 · PMID 38833528
  not yet assessed
• Growth signaling autonomy in circulating tumor cells aids metastatic seeding ↗

  PNAS Nexus · 2024 · PMID 38312224
  not yet assessed
• Human-specific elimination of epithelial Siglec-XII suppresses the risk of inflammation-driven colorectal cancers ↗

  JCI Insight · 2024 · PMID 38990656
  not yet assessed
• F.O.R.W.A.R.D: A Data-Driven Framework for Network-Based Target Prioritization in Drug Discovery ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2024 · PMID 39071297
  not yet assessed
• Every Shot Counts: Using Exemplars for Repetition Counting in Videos ↗

  arXiv (Cornell University) · 2024
  not yet assessed
• Interlinked switch circuits of biological intelligence ↗

  Trends in Biochemical Sciences · 2024 · PMID 38341333
  not yet assessed
• Abstract 4490: Targeting NQO1 with Episesaminol: A new therapeutic option identified for colorectal cancer using integrated systems biology and structural biology-based approach ↗

  Cancer Research · 2024
  not yet assessed
• Abstract 4496: A computational initiative to determine the role of dietary polyphenols against oncogenic KRAS mutants ↗

  Cancer Research · 2024
  not yet assessed
• Phosphorylation of Gαi shapes canonical Gα(i)βγ/GPCR signaling ↗

  Journal of Pharmacology and Experimental Therapeutics · 2024
  not yet assessed
• Machine learning identifies signatures of macrophage reactivity and tolerance that predict disease outcomes ↗

  EBioMedicine · 2023 · PMID 37516087
  not yet assessed
• Use Your Head: Improving Long-Tail Video Recognition ↗

  2023
  not yet assessed
• The arginine methyltransferase PRMT5 promotes mucosal defense in the intestine ↗

  Life Science Alliance · 2023 · PMID 37666668
  not yet assessed
• A circuit for secretion‐coupled cellular autonomy in multicellular eukaryotic cells ↗

  Molecular Systems Biology · 2023 · PMID 36856068
  not yet assessed
• Diverse gut pathogens exploit the host engulfment pathway via a conserved mechanism ↗

  Journal of Biological Chemistry · 2023 · PMID 37890785
  not yet assessed
• Unprecedented Canadian forest fire carbon emissions during 2023 ↗

  Research Square · 2023
  not yet assessed
• Breast Cancers That Disseminate to Bone Marrow Acquire Aggressive Phenotypes through CX43-related Tumor-Stroma Tunnels ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 36993616
  not yet assessed
• MILA: Memory-Based Instance-Level Adaptation for Cross-Domain Object Detection ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• MDA5-Autoimmunity and Interstitial Pneumonitis Contemporaneous with the COVID-19 Pandemic (MIP-C) ↗

  SSRN Electronic Journal · 2023
  not yet assessed
• Machine Learning–Guided Differentiation Therapy Targets Cancer Stem Cells in Colorectal Cancers ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37745574
  not yet assessed
• Use Your Head: Improving Long-Tail Video Recognition ↗

  arXiv (Cornell University) · 2023
  not yet assessed
• Diverse gut pathogens exploit the host engulfment pathway via a conserved mechanism ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2023 · PMID 37066267
  not yet assessed
• MDA5-autoimmunity and Interstitial Pneumonitis Contemporaneous with the COVID-19 Pandemic (MIP-C) ↗

  medRxiv · 2023 · PMID 37961408
  not yet assessed
• COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis

  EBioMedicine · 2022 · PMID 35870428
  L1 85/100
• Apoptosis like symptoms associated with abortive infection of Mycobacterium smegmatis by mycobacteriophage D29 ↗

  PLoS ONE · 2022 · PMID 35580120
  not yet assessed
• Phosphorylation of Gαi shapes canonical Gα(i)βγ/GPCR signaling ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Difficulty-Net: Learning to Predict Difficulty for Long-Tailed Recognition ↗

  arXiv (Cornell University) · 2022
  not yet assessed
• Class-Difficulty Based Methods for Long-Tailed Visual Recognition ↗

  arXiv (Cornell University) · 2022
  not yet assessed
• Growth Signaling Autonomy in Circulating Tumor Cells Aids Metastatic Seeding ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Machine Learning Identifies Signatures of Macrophage Reactivity and Tolerance that Predict Disease Outcomes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• A eukaryotic circuit for secrete and sense autonomy ↗

  Biophysical Journal · 2022
  not yet assessed
• Coupling of NOD2 to GIV is Required for Bacterial Sensing ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2022
  not yet assessed
• Network approach to mutagenesis sheds insight on phage resistance in mycobacteria ↗

  Bioinformatics · 2021 · PMID 33416849
  not yet assessed
• Mass Testing and Proactiveness Affect Epidemic Spreading ↗

  Journal of the Indian Institute of Science · 2021 · PMID 34393389
  not yet assessed
• COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021 · PMID 34873597
  not yet assessed
• A Circuit for Secretion-coupled Cellular Autonomy in Multicellular Eukaryotes ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• A holistic insight of mycobacteriophage induced changes in mycobacterial cells ↗

  bioRxiv (Cold Spring Harbor Laboratory) · 2021
  not yet assessed
• Modeling Phage–Bacteria Dynamics ↗

  Methods in molecular biology · 2020 · PMID 32162264
  not yet assessed
• A pedestrian review of games on structured populations ↗

  International Journal of Advances in Engineering Sciences and Applied Mathematics · 2019
  not yet assessed
• Modeling Bacteria–Phage Interactions and Its Implications for Phage Therapy ↗

  Advances in applied microbiology · 2018 · PMID 29914656
  not yet assessed
• Topologically Inspired Walks on Randomly Connected Landscapes With Correlated Fitness ↗

  Frontiers in Physics · 2018
  not yet assessed
• THE NETWORK ROUTE TO BIOLOGICAL COMPLEXITY ↗

  2016
  not yet assessed
• Systems biology in plant cells and their organelles ↗

  2016
  not yet assessed
• Dynamics of Mycobacteriophage-Mycobacterial Host Interaction: Evidence for Secondary Mechanisms for Host Lethality ↗

  Applied and Environmental Microbiology · 2015 · PMID 26475112
  not yet assessed
• Slow poisoning and destruction of networks: Edge proximity and its implications for biological and infrastructure networks ↗

  Physical Review E · 2015 · PMID 25768552
  not yet assessed
• COMPASS: A Web-Based COMPosite Activity Scoring System to Navigate Health and Disease Through Deterministic Digital Biomarkers ↗

  Zenodo (CERN European Organization for Nuclear Research) · 2005
  not yet assessed