Dataset search

A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.

Publications 1.3k Datasets 305 Experiments 6.2k

305 datasets

Accession	Organism	QC	Reuse (literature)	Studies (✓/⚑)
GSE35681 GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...	Mus musculus	insufficient	16	1 1✓
GSE11352 GEO · Timecourse of estradiol (10nM) exposure in MCF7 breast cance...	Homo sapiens	—	15	1 1✓
GSE130148 GEO · Single cell RNA sequencing analysis of fresh resected human...	Homo sapiens	—	15	1
GSE156063 GEO · Upper airway gene expression differentiates COVID-19 from ot...	Homo sapiens	—	15	1 1✓
GSE20898 GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...	Mus musculus	insufficient	15	1 1✓
GSE41637 GEO · Evolutionary dynamics of gene and isoform regulation in mamm...	Gallus gallus; Macaca mulatta; Bos taurus; Mus musculus; Rattus norvegicus	B 88	15	1 1✓
GSE128033 GEO · Proliferating SPP1/MERTK-expressing macrophages in idiopathi...	Homo sapiens	—	14	1
GSE59065 GEO · Age-related profiling of DNA methylation in CD8+ T cells rev...	Homo sapiens	B	14	1
GSE147405 GEO · Context specificity of the EMT transcriptional response	Homo sapiens	A 100	13	1 1⚑
GSE157827 GEO · Single-nucleus transcriptome analysis reveals dysregulation...	Homo sapiens	—	13	1
GSE174367 GEO · Single-nucleus chromatin accessibility and transcriptomic ch...	Homo sapiens	—	13	1
GSE53960 GEO · A rat RNA-Seq transcriptomic Bodymap across eleven organs an...	Rattus norvegicus	—	13	1 1✓
GSE8479 GEO · Resistance Exercise Reverses Aging in Human Skeletal Muscle	Homo sapiens	—	13	1 1✓
GSE9960 GEO	—	—	13	1
GSE129788 GEO · Single-cell transcriptomic profiling of the aging mouse brai...	Mus musculus	—	12	1
GSE130001 GEO · Single cell RNA-seq profiling of two bladder cancer specimen	Homo sapiens	—	12	1 1✓
GSE20012 GEO · Deciphering the cis-regulatory architecture of mammalian pho...	Mus musculus	insufficient	12	1 1✓
GSE21978 GEO · A global network of transcription factors, involving E2A, EB...	Mus musculus	insufficient	12	1 1✓
GSE28422 GEO · Effects of resistance exercise and resistance training on th...	Homo sapiens	—	12	1 1✓
GSE29422 GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...	Homo sapiens	insufficient	12	1 1✓
GSE40012 GEO · Blood transcriptome of human bacterial and influenza A pneum...	Homo sapiens	—	12	1 1✓
GSE61258 GEO · Human Liver Illumina Inf 450 DNA methylation data	Homo sapiens	—	12	1 1✓
GSE61496 GEO · Epigenetic signature of birth-weight discordance in Danish t...	Homo sapiens	—	12	2 1✓
GSE63492 GEO · Revisiting the microRNA expression profiling of human interv...	Homo sapiens	—	12	1 1✓
GSE113197 GEO · Single Cell RNA sequencing of Adult Human Breast Epithelial...	Homo sapiens	insufficient	11	1 1✓
GSE118828 GEO · Identification of grade and origin specific cell populations...	Homo sapiens	—	11	2
GSE122401 GEO · Proteogenomic characterization of human early-onset gastric...	Homo sapiens	A 100	11	1
GSE124395 GEO · A Human Liver Cell Atlas reveals Heterogeneity and Epithelia...	Homo sapiens	—	11	1 1⚑
GSE128423 GEO · A cellular taxonomy of the bone marrow stroma in homeostasis...	Mus musculus	—	11	2
GSE132042 GEO · Tabula Muris	Mus musculus	insufficient	11	3 2✓
GSE161731 GEO · Dysregulated transcriptional responses to SARS-CoV-2 in the...	Homo sapiens	A	11	1 1✓
GSE17156 GEO · Gene expression signatures of symptomatic respiratory viral...	Homo sapiens	insufficient	11	1 1✓
GSE4226 GEO	—	—	11	1
GSE48895 GEO · Genome-wide dynamics of Pol II elongation and its interplay...	Mus musculus	—	11	1 1⚑
GSE52386 GEO · Rapid and Pervasive Changes in Genome-Wide Enhancer Usage Du...	Mus musculus	—	11	1
GSE68310 GEO	—	insufficient	11	1 1✓
GSE80280 GEO · 3D structures of individual mammalian genomes reveal princip...	Mus musculus	insufficient	11	1 1✓
GSE9103 GEO · Skeletal Muscle Transcript Profiles in Trained or Sedentary...	Homo sapiens	—	11	1 1✓
GSE126128 GEO · Single-cell analysis of cardiogenesis reveals basis for orga...	Mus musculus	—	10	1 1✓
GSE15805 GEO · Duke-UNC-Texas-EBI ENCODE expression project	Homo sapiens	—	10	1 1✓
GSE20346 GEO · Expression profiling of critically ill influenza and bacteri...	Homo sapiens	insufficient	10	1 1✓
GSE20565 GEO · Primary and secondary ovarian tumors	Homo sapiens	—	10	1 1✓
GSE94489 GEO · Cell cycle dynamics of chromosomal organisation at single-ce...	Mus musculus	—	10	1 1✓
GSE111629 GEO · Genome wide DNA methylation study of Parkinson's disease in...	Homo sapiens	—	9	1
GSE131780 GEO · Single cell analysis of smooth muscle cell phenotypic modula...	Homo sapiens; Mus musculus	—	9	1 1✓
GSE19090 GEO · Exon arrays of ENCODE tier 1, tier 2 and tier 3 cell types	Homo sapiens	—	9	1 1✓
GSE19420 GEO	—	—	9	1 1✓
GSE19439 GEO · Blood Transcriptional Profiles in Active and Latent Tubercul...	Homo sapiens	—	9	1 1✓
GSE206285 GEO · Efficacy and safety of ustekinumab treatment in patients wit...	Homo sapiens	insufficient	9	1 1✓
GSE32063 GEO	—	—	9	1 1✓
GSE37147 GEO · Bronchial airway gene expression reflects a COPD-associated...	Homo sapiens	—	9	1 1⚑
GSE37350 GEO · Altered Subcellular Localization of Transcription Factor TEA...	Mus musculus	insufficient	9	1 1✓
GSE51057 GEO · Methylome Analysis and Epigenetic Changes Associated with Me...	Homo sapiens	—	9	1
GSE53767 GEO · Absolute quantification of protein production reveals princi...	Escherichia coli	B	9	2 2✓
GSE71862 GEO · Differential Gene Expression between MCF10A and MCF7 cells	Homo sapiens	—	9	1 1✓
GSE73072 GEO	—	insufficient	9	1 1✓
GSE73103 GEO · Many obesity-associated SNPs strongly associate with DNA met...	Homo sapiens	—	9	1
GSE74738 GEO · Pervasive polymorphic imprinted methylation in the human pla...	Homo sapiens	—	9	1 1✓
GSM1480321 GEO	—	—	9	1
GSE132901 GEO · A murine aging cell atlas reveals cell identity and tissue-s...	Mus musculus	—	8	1