Dataset search
A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.
229 datasets
| Accession | Organism | QC | Reuse (literature) | Studies (✓/⚑) |
|---|---|---|---|---|
|
GEO · Single-cell landscape of bronchoalveolar immune cells in COV...
|
Homo sapiens | — | 37 | — |
|
GEO · Genetic Programs in Human and Mouse Early Embryos Revealed b...
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Homo sapiens; Mus musculus | — | 31 | — |
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GEO · Transposition of native chromatin for fast and sensitive epi...
|
Homo sapiens | — | 31 | — |
|
GEO · Single-cell chromatin accessibility data using scATAC-seq
|
Homo sapiens; Mus musculus | — | 26 | — |
|
GEO · A Compendium of Chromatin Contact Maps Reveal Spatially Acti...
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Homo sapiens; Mus musculus | B | 21 | — |
|
GEO · Characterization of the single-cell (ES and MEF) transcripti...
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Mus musculus | — | 18 | — |
|
GEO · Comprehensive mapping of long-range interactions reveals fol...
|
Homo sapiens | — | 16 | — |
|
GEO · Identification and Characterization of the Mammalian Nuclear...
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Homo sapiens | — | 16 | — |
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GEO · Whole genome mapping of DNA G-quadruplexes in multiple speci...
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Escherichia coli; Cereibacter sphaeroides; Arabidopsis thaliana; Saccharomyces cerevisiae; Leishmania major; Trypanosoma brucei; | — | 14 | — |
|
GEO · m6A-dependent regulation of messenger RNA stability
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Homo sapiens | — | 13 | — |
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GEO · Simultaneous profiling of 3D genome structure and DNA methyl...
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Homo sapiens | — | 12 | — |
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GEO · Mammalian NET-seq reveals genome-wide nascent transcription...
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Homo sapiens | — | 12 | — |
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GEO · Human and mouse DRIP-seq and DRIPc-seq
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Homo sapiens; Mus musculus | — | 11 | — |
|
GEO
|
— | — | 10 | — |
|
GEO · Landscapes of gene translation in hepatocellular carcinoma t...
|
Homo sapiens | — | 8 | — |
|
GEO
|
— | — | 7 | — |
|
GEO · High-resolution mapping of ribosome footprints from Arabidop...
|
Arabidopsis thaliana | — | 7 | — |
|
GEO
|
— | — | 7 | — |
|
GEO · Pooled CRISPR screening with single-cell transcriptome read-...
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Homo sapiens; Mus musculus | — | 7 | — |
|
GEO · Replication initiation sites in cancer cells
|
Homo sapiens | — | 6 | — |
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GEO · Cell type-specific ribosome profiling in vivo.
|
Homo sapiens; Mus musculus | — | 6 | — |
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GEO · Native Elongating Transcript Sequencing Reveals Human Transc...
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Homo sapiens | — | 6 | — |
|
GEO
|
— | — | 6 | — |
|
GEO · Regulation of poly(A) tail and translation during the somati...
|
Homo sapiens | — | 6 | — |
|
GEO · RNA-Chromatin Interactome Reveals Enhancer-Promoter Connecti...
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Drosophila melanogaster; Homo sapiens; Mus musculus | — | 6 | — |
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GEO · Activation of HOTTIP lncRNA perturbs HSC function leading to...
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Homo sapiens; Mus musculus | — | 5 | — |
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GEO · Accurate annotation of human protein-coding small open readi...
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Homo sapiens | — | 5 | — |
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GEO · Genome-wide mapping of SARS-CoV-2 RNA structures identifies...
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Escherichia coli; Chlorocebus sabaeus; Severe acute respiratory syndrome coronavirus 2 | — | 5 | — |
|
GEO
|
— | — | 5 | — |
|
GEO · Spatial organisation of the X inactivation center
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Mus musculus | — | 5 | — |
|
GEO · The viral and cellular microRNA targetome in lymphoblastoid...
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Homo sapiens | — | 5 | — |
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GEO · Precise Maps of RNA Polymerase Reveal How Promoters Direct I...
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Drosophila melanogaster | — | 5 | — |
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GEO · RNA methylation-dependent RNA processing controls the speed...
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Homo sapiens | — | 5 | — |
|
GEO · Whole-genome Haplotype Reconstruction using Proximity-ligati...
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Homo sapiens; Mus musculus | — | 5 | — |
|
GEO
|
— | — | 5 | — |
|
GEO · Allele-specific ATAC-seq across 16 neural progenitor cell cl...
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Mus musculus | — | 5 | — |
|
GEO · A ribosome profiling study of mRNA cleavage by the endonucle...
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Escherichia coli | — | 5 | — |
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GEO · Dynamic changes in chromatin accessibility in CD8+ T cells r...
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Mus musculus | — | 5 | — |
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GEO · The U6 snRNA m6A methyltransferase METTL16 regulates SAM syn...
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Homo sapiens | — | 5 | — |
|
GEO
|
— | — | 5 | — |
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GEO · Genome-scale screens identify JNK/JUN signaling as a barrier...
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Homo sapiens | — | 4 | — |
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GEO · Organoid modeling of the tumor immune microenvironment
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Homo sapiens | — | 4 | — |
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GEO · Nascent RNA sequencing reveals widespread pausing and diverg...
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Homo sapiens | — | 4 | — |
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GEO · Joint probabilistic modeling of paired transcriptome and pro...
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Mus musculus | — | 4 | — |
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GEO · Transcriptome-profiling (RNA-seq) and Ribosome-profiling (Ri...
|
Homo sapiens | — | 4 | — |
|
GEO
|
— | — | 4 | — |
|
GEO · Accurate Design of Translational Output by a Neural Network...
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Saccharomyces cerevisiae | — | 3 | — |
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GEO
|
— | — | 3 | — |
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GEO
|
— | — | 3 | — |
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GEO · Causal signals between codon bias, mRNA structure and the ef...
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Saccharomyces cerevisiae | — | 3 | — |
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GEO
|
— | — | 3 | — |
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GEO · Cisplatin DNA Damage and Repair Maps of the Human Genome at...
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Homo sapiens | — | 3 | — |
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GEO · Cut-and-Run in situ factor profiling maps DNA binding and 3D...
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Saccharomyces cerevisiae; Homo sapiens | — | 3 | — |
|
GEO
|
— | — | 3 | — |
|
GEO
|
— | — | 3 | — |
|
GEO
|
— | — | 3 | — |
|
GEO
|
— | — | 3 | — |
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GEO · RNA editing by ADAR1 leads to context-dependent transcriptom...
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Homo sapiens | — | 2 | — |
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GEO · Cdk9 regulates a promoter-proximal checkpoint to modulate RN...
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Schizosaccharomyces pombe | — | 2 | — |
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GEO · VIRMA mediates preferential m6A mRNA methylation in 3'UTR an...
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Homo sapiens | — | 2 | — |