Dataset search

A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.

Publications 1.3k Datasets 75 Experiments 4.7k

75 datasets

Accession	Organism	QC	Reuse (literature)	Studies (✓/⚑)
GSE91061 GEO · Molecular portraits of tumor mutational and micro-environmen...	Homo sapiens	—	117	3 1✓ 1⚑
GSE72056 GEO · Single cell RNA-seq analysis of melanoma	Homo sapiens	—	101	4 2✓
GSE103322 GEO · Single cell RNA-seq analysis of head and neck cancer	Homo sapiens	—	80	3 1✓
GSE36552 GEO · Tracing pluripotency of human early embryos and embryonic st...	Homo sapiens	A	74	1
GSE11431 GEO · Mapping of transcription factor binding sites in mouse embry...	Mus musculus	—	73	2 1✓
GSE14905 GEO · Type I Interferon: Potential Therapeutic Target for Psoriasi...	Homo sapiens	—	53	1
GSE31477 GEO · ENCODE Transcription Factor Binding Sites by ChIP-seq from S...	Homo sapiens	insufficient	48	1 1✓
GSE96583 GEO · Multiplexing droplet-based single cell RNA-sequencing using...	Homo sapiens	—	28	1
E-MTAB-6814 ArrayExpress	—	insufficient	27	1 1✓
GSE11223 GEO · Colon biopsies from UC patients and healthy controls	Homo sapiens	insufficient	27	1
GSE122960 GEO · Single-Cell Transcriptomic Analysis of Human Lung Reveals Co...	Homo sapiens	—	25	2 1✓
GSE21512 GEO · Simple combinations of lineage-determining transcription fac...	Mus musculus	insufficient	23	1 1✓
GPL20712 GEO	—	—	19	1 1✓
PRJEB23709 BioProject	—	A 100	18	2 1✓ 1⚑
PRJNA490626 BioProject	—	A 96	17	1
GSE35681 GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...	Mus musculus	insufficient	16	1 1✓
GSE101571 GEO · Analysis of chromatin landscapes in early human development...	Homo sapiens; Mus musculus	—	15	1
GSE130148 GEO · Single cell RNA sequencing analysis of fresh resected human...	Homo sapiens	—	15	1
GSE20898 GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...	Mus musculus	insufficient	15	1 1✓
GSE128033 GEO · Proliferating SPP1/MERTK-expressing macrophages in idiopathi...	Homo sapiens	—	14	1
GSE8479 GEO · Resistance Exercise Reverses Aging in Human Skeletal Muscle	Homo sapiens	—	13	1 1✓
GSE129788 GEO · Single-cell transcriptomic profiling of the aging mouse brai...	Mus musculus	—	12	1
GSE20012 GEO · Deciphering the cis-regulatory architecture of mammalian pho...	Mus musculus	insufficient	12	1 1✓
GSE21978 GEO · A global network of transcription factors, involving E2A, EB...	Mus musculus	insufficient	12	1 1✓
GSE28422 GEO · Effects of resistance exercise and resistance training on th...	Homo sapiens	—	12	1 1✓
GSE29422 GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...	Homo sapiens	insufficient	12	1 1✓
GSE63492 GEO · Revisiting the microRNA expression profiling of human interv...	Homo sapiens	—	12	1 1✓
GSE118828 GEO · Identification of grade and origin specific cell populations...	Homo sapiens	—	11	2
GSE128423 GEO · A cellular taxonomy of the bone marrow stroma in homeostasis...	Mus musculus	—	11	2
GSE132042 GEO · Tabula Muris	Mus musculus	insufficient	11	3 2✓
GSE48895 GEO · Genome-wide dynamics of Pol II elongation and its interplay...	Mus musculus	—	11	1 1⚑
GSE9103 GEO · Skeletal Muscle Transcript Profiles in Trained or Sedentary...	Homo sapiens	—	11	1 1✓
GSE126128 GEO · Single-cell analysis of cardiogenesis reveals basis for orga...	Mus musculus	—	10	1 1✓
GSE59114 GEO · Single cell RNA_Seq in aging of hematopoietic stem and proge...	Mus musculus	—	10	1 1✓
GSE131780 GEO · Single cell analysis of smooth muscle cell phenotypic modula...	Homo sapiens; Mus musculus	—	9	1 1✓
GSE19420 GEO	—	—	9	1 1✓
GSE37350 GEO · Altered Subcellular Localization of Transcription Factor TEA...	Mus musculus	insufficient	9	1 1✓
GSE132901 GEO · A murine aging cell atlas reveals cell identity and tissue-s...	Mus musculus	—	8	1
GSE6863 GEO · Immature dendritic cells under hypoxic condition	Homo sapiens	insufficient	8	1
GPL19449 GEO	—	—	7	1 1✓
GSE120862 GEO · Contractile activity-specific transcriptome response to acut...	Homo sapiens	—	7	2 1✓
GSE30206 GEO · DNA binding factors shape the mouse methylome at distal regu...	Mus musculus	—	7	1 1✓
GSE32673 GEO	—	insufficient	6	1 1✓
GSE48068 GEO	—	insufficient	6	1 1✓
GSE131776 GEO · Single cell analysis of smooth muscle cell phenotypic modula...	Mus musculus	insufficient	5	1
GSM450272 GEO	—	—	4	1 1⚑
GSE154826 GEO · CITEseq analysis of non-small-cell lung cancer lesions	Homo sapiens	F 53	3	1 1✓
GSE64409 GEO · Direct regulation of T cell exhaustion by NFAT	Mus musculus	—	3	1
GSE69669 GEO	—	—	3	1
GSE75077 GEO · Whole genome transcriptomic experiments in mice heart develo...	Mus musculus	—	3	1 1✓
GSE89437 GEO	—	C	3	1 1✓
GSE92846 GEO · Stem cell regulatory elements remain bookmarked by selected...	Mus musculus	insufficient	3	1
GSE97123 GEO	—	—	3	1
E-MTAB-1788 ArrayExpress	—	insufficient	2	1 1✓
GSE100428 GEO · Heterogeneous responses of hematopoietic stem cells to infla...	Mus musculus	—	2	1 1✓
GSE104840 GEO · LSD1-mediated enhancer silencing enables endocrine cell deve...	Homo sapiens	insufficient	2	1 1✓
GSE107947 GEO · Dissection of influenza infection in vivo by single-cell RNA...	Mus musculus	C 79	2	1
GSE109962 GEO · TBP in mitotic bookmarking and reactivation of transcription...	Mus musculus	—	2	1
GSE117840 GEO · RNA secondary structome of different cellular compartments i...	Homo sapiens; Mus musculus	B	2	1 1⚑
GSE119466 GEO · LaminA/C regulates epigenetic and chromatin architecture cha...	Mus musculus	—	2	1 1✓