Dataset search

A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.

Publications 1.3k Datasets 319 Experiments 6.2k

319 datasets

Accession	Organism	QC	Reuse (literature)	Studies (✓/⚑)
C10365 ENA	—	—	44	1 1✓
GPL6104 GEO	—	—	43	1 1✓
GSE159677 GEO · Decoding the transcriptome of calcified atherosclerotic plaq...	Homo sapiens	—	39	2 1✓
phs000452 dbGaP	—	—	39	1 1✓
GSE19829 GEO · A gene expression profile of BRCAness that is associated wit...	Homo sapiens	—	36	1 1✓
GSE40419 GEO · The transcriptional landscape and mutational profile of lung...	Homo sapiens	—	35	1 1✓
GSE116256 GEO · Single-cell RNA-seq reveals AML hierarchies relevant to dise...	Homo sapiens	F 19	34	2 1✓
GSE152418 GEO · Systems biological assessment of immunity to severe and mild...	Homo sapiens	A 99	34	1 1✓
GSE32062 GEO · Immune-activation as a therapeutic direction for patients wi...	Homo sapiens	—	34	1 1✓
GSE17260 GEO · Prediction of progression-free survival in patients with adv...	Homo sapiens	—	33	1 1✓
GSE29378 GEO · Genes and Pathways Underlying Regional and Cell Type Changes...	Homo sapiens	—	33	1 1✓
GSE12470 GEO · Gene expression profiles of serous ovarian cancer samples	Homo sapiens	—	32	1 1✓
GSE92332 GEO · A single-cell survey of the small intestinal epithelium	Mus musculus	insufficient	32	1 1✓
GSE68379 GEO · The landscape of pharmacogenomic interactions in human cance...	Homo sapiens	—	31	1 1✓
GSE6008 GEO · Human ovarian tumors and normal ovaries	Homo sapiens	—	29	1 1✓
GPL16956 GEO	—	—	28	2 1✓ 1⚑
GSE178341 GEO · A Single Cell Atlas of MMRd and MMRp Colorectal Cancer	Homo sapiens	—	28	1 1✓
E-MTAB-6814 ArrayExpress	—	insufficient	27	1 1✓
GPL887 GEO	—	—	26	2 1✓ 1⚑
GSE13876 GEO · Survival Related Profile, Pathways and Transcription Factors...	Homo sapiens	—	26	1 1✓
GSE115821 GEO · Robust prediction of response to immune checkpoint blockade...	Homo sapiens	D 69	25	1 1✓
GSE21545 GEO · Biobank of Karolinska Endarterectomy (BiKE)	Homo sapiens	—	24	2 1✓
GSE84422 GEO · Molecular Signatures Underlying Selective Regional Vulnerabi...	Homo sapiens	—	24	1 1✓
GSE21512 GEO · Simple combinations of lineage-determining transcription fac...	Mus musculus	insufficient	23	1 1✓
GSE49997 GEO	—	—	23	1 1✓
GSE73721 GEO · RNA-Seq of human astrocytes	Homo sapiens; Mus musculus	—	23	1 1✓ 1⚑
GPL2986 GEO	—	—	22	1 1✓
GSE34608 GEO · Gene and microRNA expression in pulmonary tuberculosis and s...	Homo sapiens	—	22	2 1✓
GSE72970 GEO · Molecular subtypes of metastatic colorectal cancer are predi...	Homo sapiens	—	22	1 1✓
GSE6269 GEO · Gene expression patterns in blood leukocytes discriminate pa...	Homo sapiens	insufficient	21	1 1✓
GSE152075 GEO · In vivo antiviral host response to SARS-CoV-2 by viral load,...	Homo sapiens	A	20	3 2✓
GSE85158 GEO · Epigenetic Landscapes in Breast Cancer Cells	Homo sapiens	—	20	1 1✓
GPL20712 GEO	—	—	19	1 1✓
GSE37250 GEO · Genome-wide transcriptional profiling of HIV positive and ne...	Homo sapiens	insufficient	19	1 1✓
GSE66733 GEO · Chromatin interaction analysis reveals changes in small chro...	Homo sapiens	—	19	1 1✓
M19921 ENA	—	—	19	1 1✓
PRJEB23709 BioProject	—	A 100	18	2 1✓ 1⚑
R71007 ENA	—	—	18	1 1✓
GPL80 GEO	—	—	17	3 1✓ 1⚑
GQ994935 ENA	—	—	16	1 1✓
GSE35681 GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...	Mus musculus	insufficient	16	1 1✓
GSE11352 GEO · Timecourse of estradiol (10nM) exposure in MCF7 breast cance...	Homo sapiens	—	15	1 1✓
GSE156063 GEO · Upper airway gene expression differentiates COVID-19 from ot...	Homo sapiens	—	15	1 1✓
GSE20898 GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...	Mus musculus	insufficient	15	1 1✓
GSE41637 GEO · Evolutionary dynamics of gene and isoform regulation in mamm...	Gallus gallus; Macaca mulatta; Bos taurus; Mus musculus; Rattus norvegicus	B 88	15	1 1✓
GSE53960 GEO · A rat RNA-Seq transcriptomic Bodymap across eleven organs an...	Rattus norvegicus	—	13	1 1✓
GSE8479 GEO · Resistance Exercise Reverses Aging in Human Skeletal Muscle	Homo sapiens	—	13	1 1✓
GSE130001 GEO · Single cell RNA-seq profiling of two bladder cancer specimen	Homo sapiens	—	12	1 1✓
GSE20012 GEO · Deciphering the cis-regulatory architecture of mammalian pho...	Mus musculus	insufficient	12	1 1✓
GSE21978 GEO · A global network of transcription factors, involving E2A, EB...	Mus musculus	insufficient	12	1 1✓
GSE28422 GEO · Effects of resistance exercise and resistance training on th...	Homo sapiens	—	12	1 1✓
GSE29422 GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...	Homo sapiens	insufficient	12	1 1✓
GSE40012 GEO · Blood transcriptome of human bacterial and influenza A pneum...	Homo sapiens	—	12	1 1✓
GSE61258 GEO · Human Liver Illumina Inf 450 DNA methylation data	Homo sapiens	—	12	1 1✓
GSE61496 GEO · Epigenetic signature of birth-weight discordance in Danish t...	Homo sapiens	—	12	2 1✓
GSE63492 GEO · Revisiting the microRNA expression profiling of human interv...	Homo sapiens	—	12	1 1✓
E-MTAB-264 ArrayExpress	—	insufficient	11	1 1✓
GSE113197 GEO · Single Cell RNA sequencing of Adult Human Breast Epithelial...	Homo sapiens	insufficient	11	1 1✓
GSE132042 GEO · Tabula Muris	Mus musculus	insufficient	11	3 2✓
GSE161731 GEO · Dysregulated transcriptional responses to SARS-CoV-2 in the...	Homo sapiens	A	11	1 1✓