Dataset search
A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.
846 datasets
| Accession | Organism | QC | Reuse (literature) | Studies (✓/⚑) |
|---|---|---|---|---|
|
GEO · UCSD Human Reference Epigenome Mapping Project
|
Homo sapiens | insufficient | 56 | 1 1✓ |
|
GEO · Multi-scale 3D genome rewiring during mouse neural developme...
|
Mus musculus | insufficient | 52 | — |
|
GEO · ENCODE Transcription Factor Binding Sites by ChIP-seq from S...
|
Homo sapiens | insufficient | 48 | 1 1✓ |
|
GEO · Histone Modifications by ChIP-seq from ENCODE/LICR
|
Mus musculus | insufficient | 35 | — |
|
GEO · Genome-wide maps of chromatin state in pluripotent and linea...
|
Mus musculus | insufficient | 33 | — |
|
GEO · Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke Unive...
|
Homo sapiens | insufficient | 28 | — |
|
GEO · Simultaneous profiling of transcriptome and chromatin access...
|
Homo sapiens; Mus musculus | insufficient | 27 | — |
|
GEO · Allelic reprogramming of the histone modification H3K4me3 in...
|
Danio rerio; Mus musculus | insufficient | 25 | — |
|
GEO · Massively parallel single-cell chromatin landscapes of human...
|
Homo sapiens; Mus musculus | insufficient | 23 | — |
|
GEO · Simple combinations of lineage-determining transcription fac...
|
Mus musculus | insufficient | 23 | 1 1✓ |
|
GEO · DNaseI Hypersensitivity by Digital DNaseI from ENCODE/Univer...
|
Homo sapiens | insufficient | 22 | — |
|
GEO · Integrative single-cell chromatin and transcriptome profilin...
|
Homo sapiens; Mus musculus | insufficient | 21 | — |
|
GEO · ATAC-seq data
|
Homo sapiens | insufficient | 18 | — |
|
GEO · A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibi...
|
Mus musculus | insufficient | 17 | — |
|
GEO · Single-Cell Whole-Genome Bisulfite Sequencing for Analysis o...
|
Mus musculus | insufficient | 17 | — |
|
GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...
|
Mus musculus | insufficient | 16 | 1 1✓ |
|
GEO · DNaseI Hypersensitivity by Digital DNaseI from ENCODE/Univer...
|
Mus musculus | insufficient | 16 | — |
|
GEO · Targeted degradation of CTCF decouples local insulation of c...
|
Mus musculus | insufficient | 16 | — |
|
GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...
|
Mus musculus | insufficient | 15 | 1 1✓ |
|
GEO · Patterns of Population Epigenomic Diversity in Arabidopsis t...
|
Arabidopsis thaliana | insufficient | 14 | — |
|
GEO · DNA specificity determinants associate with distinct transcr...
|
Homo sapiens | insufficient | 13 | — |
|
GEO · Unique Broad Histone Lysine 4 Methylation Domains in Mouse O...
|
Homo sapiens; Mus musculus | insufficient | 13 | — |
|
GEO · Deciphering the cis-regulatory architecture of mammalian pho...
|
Mus musculus | insufficient | 12 | 1 1✓ |
|
GEO · A global network of transcription factors, involving E2A, EB...
|
Mus musculus | insufficient | 12 | 1 1✓ |
|
GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...
|
Homo sapiens | insufficient | 12 | 1 1✓ |
|
GEO · Genome-wide profiling of PPARγ:RXR and RNA polymerase II
|
Mus musculus | insufficient | 11 | — |
|
GEO · Resetting epigenetic memory by reprogramming of histone modi...
|
Mus musculus | insufficient | 11 | — |
|
GEO · 3D structures of individual mammalian genomes reveal princip...
|
Mus musculus | insufficient | 11 | 1 1✓ |
|
GEO · Genome-wide map of H3K4me3 in 12 day post-partum mouse sperm...
|
Mus musculus | insufficient | 10 | — |
|
GEO · Identification of in vivo DNA-binding mechanisms of Pax6 and...
|
Mus musculus | insufficient | 10 | — |
|
GEO
|
— | insufficient | 10 | — |
|
GEO · Single-cell RNA-seq Uncovers Dynamic Processes and Critical...
|
Mus musculus | insufficient | 9 | — |
|
GEO · Altered Subcellular Localization of Transcription Factor TEA...
|
Mus musculus | insufficient | 9 | 1 1✓ |
|
GEO · Conserved epigenomic signatures between mouse and human eluc...
|
Mus musculus | insufficient | 9 | — |
|
GEO · Single Cell Methylome Signatures Reveal Distinct Neuronal Po...
|
Homo sapiens; Mus musculus | insufficient | 9 | — |
|
GEO
|
— | insufficient | 9 | — |
|
GEO · Epigenomic Profiling and Single_Nucleus_RNA_Seq of Adult Hum...
|
Homo sapiens; Mus musculus | insufficient | 8 | — |
|
GEO · DNA Methylation by Reduced Representation Bisulfite Seq from...
|
Homo sapiens | insufficient | 8 | — |
|
GEO · Base Resolution Analysis of 5-Hydroxymethylcytosine in the M...
|
Homo sapiens; Mus musculus | insufficient | 8 | — |
|
GEO · Comparative profiling of chromatin state maps and transcript...
|
Homo sapiens | insufficient | 8 | — |
|
GEO
|
— | insufficient | 8 | — |
|
GEO
|
— | insufficient | 8 | — |
|
GEO
|
— | insufficient | 8 | — |
|
GEO · Transcriptional and chromatin profiles of duodenum epitheliu...
|
Homo sapiens; Mus musculus | insufficient | 7 | — |
|
GEO
|
— | insufficient | 7 | — |
|
GEO · The maize methylome modulates mRNA splicing and reveals wide...
|
Zea mays | insufficient | 7 | — |
|
GEO · High resolution chromatin dynamics during a yeast stress res...
|
Saccharomyces cerevisiae | insufficient | 7 | — |
|
BioProject
|
— | insufficient | 7 | — |
|
GEO · Single cell RNA-seq and ATAC-seq of EMT induced by TGFbeta s...
|
Homo sapiens | insufficient | 6 | — |
|
GEO · Analyses of methylomes of multiple tissues in cattle
|
Bos taurus | insufficient | 6 | — |
|
GEO · Diurnal changes of HDAC3, Rev-erbα, NCoR and Pol II recruitm...
|
Mus musculus | insufficient | 6 | — |
|
GEO
|
— | insufficient | 6 | 1 1✓ |
|
GEO · Replication Timing by Repli-seq from ENCODE/University of Wa...
|
Homo sapiens | insufficient | 6 | — |
|
GEO
|
— | insufficient | 6 | 1 1✓ |
|
GEO · NeuroD2 ChIP-SEQ from embryonic cortex
|
Mus musculus | insufficient | 6 | — |
|
GEO · GATA3-mediated chromatin reprogramming in breast cancer cell...
|
Homo sapiens | insufficient | 6 | — |
|
GEO · Hierarchy within the mammary STAT5-driven Wap super-enhancer
|
Mus musculus | insufficient | 6 | — |
|
GEO · Establishing Chromatin Regulatory Landscape during Mouse Pre...
|
Mus musculus | insufficient | 6 | — |
|
GEO · An Atlas of Chromatin Accessibility in the Adult Human Brain
|
Homo sapiens | insufficient | 6 | — |
|
GEO · Mll3 and Mll4 facilitate enhancer RNA synthesis and transcri...
|
Mus musculus | insufficient | 6 | — |