Dataset search

A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.

Publications 1.3k Datasets 123 Experiments 4.7k

123 datasets

Accession	Organism	QC	Reuse (literature)	Studies (✓/⚑)
GSE16256 GEO · UCSD Human Reference Epigenome Mapping Project	Homo sapiens	insufficient	56	1 1✓
GSE31477 GEO · ENCODE Transcription Factor Binding Sites by ChIP-seq from S...	Homo sapiens	insufficient	48	1 1✓
GSE116256 GEO · Single-cell RNA-seq reveals AML hierarchies relevant to dise...	Homo sapiens	F 19	34	2 1✓
GSE71585 GEO · Adult mouse cortical cell taxonomy by single cell transcript...	Mus musculus	B 87	31	1
GSE100866 GEO · CITE-seq: Large scale simultaneous measuremnt of epitopes an...	Homo sapiens	A 100	25	1 1✓
GSE21512 GEO · Simple combinations of lineage-determining transcription fac...	Mus musculus	insufficient	23	1 1✓
GSE107585 GEO · Comprehensive single cell RNAseq analysis of the kidney reve...	Mus musculus	B 83	19	1
GSE131778 GEO · Single cell analysis of smooth muscle cell phenotypic modula...	Homo sapiens	A 100	18	1
PRJEB23709 BioProject	—	A 100	18	2 1✓ 1⚑
PRJNA490626 BioProject	—	A 96	17	1
GSE35681 GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...	Mus musculus	insufficient	16	1 1✓
GSE20898 GEO · Genome-wide Analyses of Transcription Factor GATA3-Mediated...	Mus musculus	insufficient	15	1 1✓
GSE147405 GEO · Context specificity of the EMT transcriptional response	Homo sapiens	A 100	13	1 1⚑
GSE20012 GEO · Deciphering the cis-regulatory architecture of mammalian pho...	Mus musculus	insufficient	12	1 1✓
GSE21978 GEO · A global network of transcription factors, involving E2A, EB...	Mus musculus	insufficient	12	1 1✓
GSE29422 GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...	Homo sapiens	insufficient	12	1 1✓
GSE46622 GEO · High-throughput sequencing of matched colorectal normal, tum...	Homo sapiens	F 58	10	1 1✓
GSE81904 GEO · Drop-Seq analysis of P17 FACS sorted retinal cells from the...	Mus musculus	D 68	10	1 1✓
PRJNA248792 BioProject	—	A 95	10	1 1✓
GSE37350 GEO · Altered Subcellular Localization of Transcription Factor TEA...	Mus musculus	insufficient	9	1 1✓
PRJNA591860 BioProject	—	B 87	9	1
PRJNA204941 BioProject	—	A 100	7	2 2✓
GSE155673 GEO · Systems biological assessment of immunity to severe and mild...	Homo sapiens	C 75	6	1 1✓
GSE32673 GEO	—	insufficient	6	1 1✓
GSE48068 GEO	—	insufficient	6	1 1✓
GSM958729 GEO	—	B 82	6	1 1✓
GSE123496 GEO · Human brain tissues from healthy controls and multiple scler...	Homo sapiens	A 90	5	1 1✓
GSE63119 GEO · Multiplex-NGS for identification of differentially expressed...	Homo sapiens	B 83	5	1 1✓
GSE117822 GEO · Transcriptome Analysis of Huh7 cells Infected with Adenoviru...	Homo sapiens	F 33	4	1 1⚑
GSE121141 GEO · A whole lifespan mouse multi-tissue DNA methylation clock	Mus musculus	insufficient	4	1 1✓
GSE13845 GEO · ChIP-seq Accurately Predicts Tissue-Specific Activity of Enh...	Mus musculus	insufficient	4	1 1✓
GSE59765 GEO · EGFR and MEK pathway signature RNA-Seq datasets	Homo sapiens	A 100	4	1 1✓
GSE106273 GEO · Differentiation dynamics of mammary epithelial cells reveale...	Mus musculus	B 83	3	1 1✓
GSE156596 GEO · Single-cell RNA-sequencing of iBlastoids generated by reprog...	Homo sapiens	A 93	3	1
GSE58321 GEO	—	D 68	3	1 1✓
GSE92846 GEO · Stem cell regulatory elements remain bookmarked by selected...	Mus musculus	insufficient	3	1
GSE96518 GEO · Transcriptomic and proteomic landscape of mitochondrial dysf...	Mus musculus	B 85	3	1 1✓
PRJNA222257 BioProject	—	A 94	3	1 1✓
SRP046046 ENA	—	B 83	3	1
SRR1979118 ENA	—	A 100	3	1 1✓
ERR852097 ENA	—	B 83	2	1 1✓
ERR852099 ENA	—	B 83	2	1 1✓
GSE104840 GEO · LSD1-mediated enhancer silencing enables endocrine cell deve...	Homo sapiens	insufficient	2	1 1✓
GSE107947 GEO · Dissection of influenza infection in vivo by single-cell RNA...	Mus musculus	C 79	2	1
GSE111113 GEO · Single-Cell Transcriptomes Distinguish Stem Cell State Chang...	Mus musculus	A 100	2	1 1✓
GSE120132 GEO · A multi-tissue full lifespan epigenetic clock for mice [I]	Mus musculus	insufficient	2	1 1✓
GSE190094 GEO	—	B 83	2	1 1✓
GSE30337 GEO	—	A 93	2	1 1✓
PRJEB3060 BioProject	—	A 100	2	1 1✓
PRJEB4677 BioProject	—	B 89	2	1 1✓
SRP041863 ENA	—	A 91	2	1 1✓
SRR1820680 ENA	—	D 67	2	1 1✓
SRR5127219 ENA	—	B 83	2	1 1✓
ERR409900 ENA	—	B 83	1	1 1✓
ERR973611 ENA	—	B 83	1	1 1✓
ERR973613 ENA	—	B 83	1	1 1✓
GSE120138 GEO · Association of cohesin subunits on chromosomes	Saccharomyces cerevisiae	insufficient	1	1
GSE151551 GEO	—	insufficient	1	1 1✓
GSE181053 GEO · Loss of Cdx2 drives direct trophoblast differentiation into...	Mus musculus	insufficient	1	1 1✓
PRJDB547 BioProject	—	F 47	1	1 1✓