Dataset search
A search engine for scientific quality and reusable datasets: find a dataset, see what it is, how widely it is reused across the literature, and — where our agents have reproduced the papers that use it — whether it holds up. Hands-on, evidence-based, never an unbacked claim.
95 datasets
| Accession | Organism | QC | Reuse (literature) | Studies (✓/⚑) |
|---|---|---|---|---|
|
GEO · UCSD Human Reference Epigenome Mapping Project
|
Homo sapiens | insufficient | 56 | 1 1✓ |
|
GEO · Multi-scale 3D genome rewiring during mouse neural developme...
|
Mus musculus | insufficient | 52 | — |
|
GEO · ENCODE Transcription Factor Binding Sites by ChIP-seq from S...
|
Homo sapiens | insufficient | 48 | 1 1✓ |
|
GEO · Histone Modifications by ChIP-seq from ENCODE/LICR
|
Mus musculus | insufficient | 35 | — |
|
GEO · Genome-wide maps of chromatin state in pluripotent and linea...
|
Mus musculus | insufficient | 33 | — |
|
GEO · Allelic reprogramming of the histone modification H3K4me3 in...
|
Danio rerio; Mus musculus | insufficient | 25 | — |
|
GEO · Simple combinations of lineage-determining transcription fac...
|
Mus musculus | insufficient | 23 | 1 1✓ |
|
GEO · A multi-omic single-cell atlas of human gynecological malign...
|
Homo sapiens | insufficient | 21 | — |
|
GEO · ChIP-seq and mRNA-seq experiment to find the direct target g...
|
Mus musculus | insufficient | 16 | 1 1✓ |
|
GEO · Targeted degradation of CTCF decouples local insulation of c...
|
Mus musculus | insufficient | 16 | — |
|
GEO · Dynamics of enhancer chromatin signatures mark the transitio...
|
Danio rerio | insufficient | 15 | — |
|
GEO · Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/...
|
Homo sapiens | insufficient | 14 | — |
|
GEO · DNA specificity determinants associate with distinct transcr...
|
Homo sapiens | insufficient | 13 | — |
|
GEO · Master Transcription Factors and Mediator Establish Super-En...
|
Mus musculus | insufficient | 13 | — |
|
GEO · Unique Broad Histone Lysine 4 Methylation Domains in Mouse O...
|
Homo sapiens; Mus musculus | insufficient | 13 | — |
|
GEO · Deciphering the cis-regulatory architecture of mammalian pho...
|
Mus musculus | insufficient | 12 | 1 1✓ |
|
GEO · A global network of transcription factors, involving E2A, EB...
|
Mus musculus | insufficient | 12 | 1 1✓ |
|
GEO · Chromatin and Transcriptional Signatures for Nodal Signaling...
|
Homo sapiens | insufficient | 12 | 1 1✓ |
|
GEO · Genome-wide modelling of transcription kinetics reveals patt...
|
Homo sapiens | insufficient | 12 | — |
|
GEO · Genome-wide profiling of PPARγ:RXR and RNA polymerase II
|
Mus musculus | insufficient | 11 | — |
|
GEO · Genome-wide distribution and function of ATP-dependent chrom...
|
Mus musculus | insufficient | 11 | — |
|
GEO · Resetting epigenetic memory by reprogramming of histone modi...
|
Mus musculus | insufficient | 11 | — |
|
GEO · 3D structures of individual mammalian genomes reveal princip...
|
Mus musculus | insufficient | 11 | 1 1✓ |
|
GEO · Comparative functional genome annotation of livestock specie...
|
Gallus gallus; Sus scrofa; Bos taurus | insufficient | 10 | — |
|
GEO · ChIP-Seq of Sox2 and Brn2 in ESCs, NPCs, and differentiating...
|
Mus musculus | insufficient | 10 | — |
|
GEO · Genome-wide map of H3K4me3 in 12 day post-partum mouse sperm...
|
Mus musculus | insufficient | 10 | — |
|
GEO · Identification of in vivo DNA-binding mechanisms of Pax6 and...
|
Mus musculus | insufficient | 10 | — |
|
GEO · Myc regulates chromatin decompaction and nuclear architectur...
|
Mus musculus | insufficient | 10 | — |
|
GEO
|
— | insufficient | 10 | — |
|
GEO · Single-cell RNA-seq Uncovers Dynamic Processes and Critical...
|
Mus musculus | insufficient | 9 | — |
|
GEO · Resolving the 3D landscape of transcription-linked mammalian...
|
Mus musculus | insufficient | 9 | — |
|
GEO · Altered Subcellular Localization of Transcription Factor TEA...
|
Mus musculus | insufficient | 9 | 1 1✓ |
|
GEO · Latent enhancers unveiled by stimulation expand and adapt th...
|
Mus musculus | insufficient | 9 | — |
|
GEO · Activation and repression by oncogenic Myc shapes tumour-spe...
|
Homo sapiens; Mus musculus | insufficient | 9 | — |
|
GEO · Affinity-seq detects genome-wide PRDM9 binding sites and rev...
|
Mus musculus | insufficient | 9 | — |
|
GEO · Conserved epigenomic signatures between mouse and human eluc...
|
Mus musculus | insufficient | 9 | — |
|
GEO · The MLL-AF9 and MLL-AF4 oncofusion proteins bind a distinct...
|
Homo sapiens | insufficient | 9 | — |
|
GEO · Cooperative binding of Oct4, Sox2, and Klf4 with stage-speci...
|
Mus musculus | insufficient | 9 | — |
|
GEO
|
— | insufficient | 9 | — |
|
GEO
|
— | insufficient | 9 | — |
|
GEO · Genome-wide maps of nucleosome occupancy in human lymphoblas...
|
Homo sapiens | insufficient | 8 | — |
|
GEO · Comparative profiling of chromatin state maps and transcript...
|
Homo sapiens | insufficient | 8 | — |
|
GEO · Latent enhancers unveiled by stimulation expand and adapt th...
|
Mus musculus | insufficient | 8 | — |
|
GEO
|
— | insufficient | 8 | — |
|
GEO · Integrative single-cell analysis of transcriptional and epig...
|
Homo sapiens | insufficient | 8 | — |
|
GEO
|
— | insufficient | 8 | — |
|
GEO
|
— | insufficient | 8 | — |
|
GEO · Re-configuration of Chromatin Structure During the Mitosis-G...
|
Mus musculus | insufficient | 7 | — |
|
GEO · Detection of genomic G-quadruplexes in living cells using a...
|
Gallus gallus; Homo sapiens; Mus musculus | insufficient | 7 | — |
|
GEO · Simultaneous trimodal single cell measurement of transcripts...
|
Homo sapiens | insufficient | 7 | — |
|
GEO
|
— | insufficient | 7 | — |
|
GEO · Comprehensive identification of long non-coding RNAs express...
|
Danio rerio | insufficient | 7 | — |
|
GEO · Genome-wide binding sites of Hypoxia inducible factor 1 (HIF...
|
Homo sapiens | insufficient | 7 | — |
|
GEO · Nucleosome Positioning and Histone Modifications Define Rela...
|
Homo sapiens | insufficient | 7 | — |
|
GEO · High resolution chromatin dynamics during a yeast stress res...
|
Saccharomyces cerevisiae | insufficient | 7 | — |
|
GEO
|
— | insufficient | 7 | — |
|
BioProject
|
— | insufficient | 7 | — |
|
GEO · Inherent DNA binding specificities of the HIF-1α and HIF-2α...
|
Homo sapiens | insufficient | 6 | — |
|
GEO · KLF1/EKLF regulatory networks in primary erythroid cells
|
Mus musculus | insufficient | 6 | — |
|
GEO
|
— | insufficient | 6 | — |